mRNA_Ecto-sp13_S_contig6854.17816.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6854.17816.1 vs. uniprot
Match: D7FZE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE4_ECTSI) HSP 1 Score: 191 bits (485), Expect = 1.780e-49 Identity = 139/163 (85.28%), Postives = 140/163 (85.89%), Query Frame = 3
Query: 795 KTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKKPAAAEGSGSPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEEAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLLLAQMDL 1283
+TSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKKPAAAE SGS S XXXXXXXXXXX XXXXXXXXX XXXXXX GAEEAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLLLAQMDL
Sbjct: 278 QTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKKPAAAESSGSSXSVETAPTGXXXXXXXXXXXAMDTETPATXXXXXXXXXPAXXXXXXAGGAEEAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLLLAQMDL 440
BLAST of mRNA_Ecto-sp13_S_contig6854.17816.1 vs. uniprot
Match: A0A6H5L2G1_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G1_9PHAE) HSP 1 Score: 103 bits (256), Expect = 4.720e-20 Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 3
Query: 795 KTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQA 956
+TSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQA
Sbjct: 278 QTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQA 331
BLAST of mRNA_Ecto-sp13_S_contig6854.17816.1 vs. uniprot
Match: W7T228_9STRA (DNA damage inducible protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T228_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 6.970e-15 Identity = 63/160 (39.38%), Postives = 73/160 (45.62%), Query Frame = 3
Query: 795 KTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKKPAAAEGSGSPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEEAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLLLAQ 1274
+ DVDFLFGLDMLKRH C IDL+ ++L LGSAG VPFL+EKDLP+ AR Q E E EG GS G E QL +GFSREQA L T G+ E+AA LLLA+
Sbjct: 310 ENDDVDFLFGLDMLKRHQCCIDLRRNLLVLGSAGKEVPFLAEKDLPARARGHQEEGAEKGGEGGREGEGSVGE----------------------------------------------GREAGLEGQLIGLGFSREQARSGLRRTEGNVEEAAALLLAE 423
BLAST of mRNA_Ecto-sp13_S_contig6854.17816.1 vs. uniprot
Match: A0A7S0QY69_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QY69_9CHLO) HSP 1 Score: 77.0 bits (188), Expect = 4.810e-11 Identity = 69/158 (43.67%), Postives = 90/158 (56.96%), Query Frame = 3
Query: 795 KTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSAR-ETQAEDLENKKPAAAEGSGSPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEEAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLL 1265
++ D++FLFGLD+LKRH C IDLK ++L +GS G +VPFL E DLP R E + E+ P+ A S +P + XXXXXXXXXXXXXXX +E KV LT +GFSR+QA AL +TGG+ + AA +L
Sbjct: 284 ESGDMEFLFGLDLLKRHQCCIDLKDNVLRIGSTGVAVPFLGEGDLPIHLRGEFGDAEPESSTPSGATTSAAPPTASXXXXXXXXXXXXXXXESAVTPAPVAAQQV----------------VDEGKVASLTGLGFSRQQALAALEATGGNVDLAASML 425
BLAST of mRNA_Ecto-sp13_S_contig6854.17816.1 vs. uniprot
Match: C1DZD3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZD3_MICCC) HSP 1 Score: 73.6 bits (179), Expect = 5.330e-10 Identity = 62/157 (39.49%), Postives = 79/157 (50.32%), Query Frame = 3
Query: 795 KTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKKPAAAEGSGSPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEEAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLL 1265
K D+DFL GLDMLKRH C IDL+ + L +GSAG S+PFL E DLP+ AR ++ E + P XXXXXXXXXX G +AK+ +L +GF +EQ E ALS+ GG+ E AA +L
Sbjct: 283 KEQDMDFLLGLDMLKRHQCCIDLEKNELRVGSAGVSLPFLGEADLPAHARP---QNFEEQPPTXX---------------------------------------XXXXXXXXXXAPAAAGGNDAKIAKLMELGFPKEQCEQALSAAGGNEEHAAAIL 397
BLAST of mRNA_Ecto-sp13_S_contig6854.17816.1 vs. uniprot
Match: A0A7I8LCZ7_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LCZ7_SPIIN) HSP 1 Score: 71.6 bits (174), Expect = 2.150e-9 Identity = 55/155 (35.48%), Postives = 70/155 (45.16%), Query Frame = 3
Query: 801 SDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKKPAAAEGSGSPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEEAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLL 1265
S+VDFLFGLDML++H C+IDLK ++L +G SVPFL EKDLPS R+ E + PAA GS AS G + +K+ +L +GF RE AL G+ EQAAG L
Sbjct: 277 SNVDFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDLPSDIRDK--ESYSKQAPAA---QGSDASLCRTTSPELPPH----------------------------------GKKLSKIRKLVELGFGREAVIQALKLFNGNEEQAAGFL 392
BLAST of mRNA_Ecto-sp13_S_contig6854.17816.1 vs. uniprot
Match: A0A090ME57_OSTTA (UBA-like n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090ME57_OSTTA) HSP 1 Score: 70.1 bits (170), Expect = 6.950e-9 Identity = 53/161 (32.92%), Postives = 71/161 (44.10%), Query Frame = 3
Query: 795 KTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSE----KDLPSSARETQAEDLENKKPAAAEGSGSPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEEAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLL 1265
K +D+DF+FGLDML+RH C IDLK ++L +GS G +PFLSE K + + A D K PA A SG A +E K+++L A+GF R++ AL STGG+ E A LL
Sbjct: 279 KENDIDFIFGLDMLRRHACSIDLKRNVLVIGSTGTELPFLSEAEVGKQMGVFSNGGDAGDTVAKSPAPANDSGEQAPSSATTSRP----------------------------------------DEEKISRLMALGFGRQEVINALESTGGNEEFAGALL 399
BLAST of mRNA_Ecto-sp13_S_contig6854.17816.1 vs. uniprot
Match: A0A4D9B2D9_SALSN (DNA damage-inducible protein 1 n=3 Tax=Salvia TaxID=21880 RepID=A0A4D9B2D9_SALSN) HSP 1 Score: 70.1 bits (170), Expect = 7.320e-9 Identity = 52/155 (33.55%), Postives = 74/155 (47.74%), Query Frame = 3
Query: 804 DVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKKPAAAEGSGSPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAE-EAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLL 1265
+++FLFGLDML++H C+IDLK ++L +G SVPFL+EKD+PS + + K A++ G+ +P++ GAE EAKV +L +GF REQ AL G+ EQAAG L
Sbjct: 284 NMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLAEKDIPSQFLDEE----RYAKDASSSGAQAPSATRENVSSPSGPSGSISNNASQ-------------------------GAEFEAKVAKLVELGFGREQVVQALKLFNGNEEQAAGFL 409
BLAST of mRNA_Ecto-sp13_S_contig6854.17816.1 vs. uniprot
Match: A0A5D3DHR9_CUCME (DNA damage-inducible protein 1 isoform X2 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DHR9_CUCME) HSP 1 Score: 66.2 bits (160), Expect = 8.980e-9 Identity = 53/162 (32.72%), Postives = 70/162 (43.21%), Query Frame = 3
Query: 783 FFYTKTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKKPAAAEGSGSPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAE-EAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLL 1265
F + ++DFLFGLDML++H C+IDLK ++L +G SVPFL EKD+P S + E + A SG+P + G E EAKV +L +GF RE AL G+ EQAAG L
Sbjct: 43 FLVLDSPNMDFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPPSLFD------EERLSKEASSSGAPVASSPTENSRNATAARATGNVGGAAQ----------------------GPEFEAKVAKLVELGFQREAVIQALKLFDGNEEQAAGFL 176
BLAST of mRNA_Ecto-sp13_S_contig6854.17816.1 vs. uniprot
Match: A0A438K0L7_VITVI (DNA damage-inducible protein 1 n=4 Tax=Vitis TaxID=3603 RepID=A0A438K0L7_VITVI) HSP 1 Score: 70.1 bits (170), Expect = 9.150e-9 Identity = 53/162 (32.72%), Postives = 70/162 (43.21%), Query Frame = 3
Query: 783 FFYTKTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKKPAAAEGSGSPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAE-EAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLL 1265
F + +++FLFGLDML++H C+IDLK ++L +G SVPFL EKD+PS + E + A SG PA+ G E EAKVT+L +GF R AL G+ EQAAG L
Sbjct: 308 FMVLDSPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLQEKDIPSHFLD------EERYSKQASSSGGPAASGAKDKNDNPLAGVQSVEQDSDCSENRREACCRDDQNFLSITWSTQGTEFEAKVTKLVELGFERGAVIQALGLFNGNEEQAAGFL 463 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6854.17816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6854.17816.1 >prot_Ecto-sp13_S_contig6854.17816.1 ID=prot_Ecto-sp13_S_contig6854.17816.1|Name=mRNA_Ecto-sp13_S_contig6854.17816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp MLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKKPback to top mRNA from alignment at Ecto-sp13_S_contig6854:4752..7926- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6854.17816.1 ID=mRNA_Ecto-sp13_S_contig6854.17816.1|Name=mRNA_Ecto-sp13_S_contig6854.17816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3175bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6854:4752..7926- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6854:4752..7926- >mRNA_Ecto-sp13_S_contig6854.17816.1 ID=mRNA_Ecto-sp13_S_contig6854.17816.1|Name=mRNA_Ecto-sp13_S_contig6854.17816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6854:4752..7926- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |