mRNA_Ecto-sp13_S_contig6850.17808.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6850.17808.1
Unique NamemRNA_Ecto-sp13_S_contig6850.17808.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6850.17808.1 vs. uniprot
Match: D7FRR5_ECTSI (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR5_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 2.350e-93
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 1
Query:   43 FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGPQETATSRKHDAMERWSNSLRSLSSFVAARVEC 477
            FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGP ET TSRKHDAMERWSNSLRSLSSFVAARVEC
Sbjct:  214 FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGPLETTTSRKHDAMERWSNSLRSLSSFVAARVEC 358          
BLAST of mRNA_Ecto-sp13_S_contig6850.17808.1 vs. uniprot
Match: A0A6H5JKQ1_9PHAE (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ1_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 1.070e-91
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 1
Query:   43 FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGPQETATSRKHDAMERWSNSLRSLSSFVAARVEC 477
            FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKT EVEKLLI+LILDRRLNGKI+QIEGFLLLDGPQETATSRKHDAMERWSNSLRSLSSFVAARVEC
Sbjct:  306 FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTTEVEKLLINLILDRRLNGKINQIEGFLLLDGPQETATSRKHDAMERWSNSLRSLSSFVAARVEC 450          
BLAST of mRNA_Ecto-sp13_S_contig6850.17808.1 vs. uniprot
Match: A0A7S2B813_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B813_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.590e-50
Identity = 82/143 (57.34%), Postives = 108/143 (75.52%), Query Frame = 1
Query:   43 FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGPQETATSRKHDAMERWSNSLRSLSSFVAARV 471
            +QEEKEI+AM  LR AYE NDL  FER L DKRNRI  DPF+M Y+ PL++R+RE VL+ L KPY +I + F+A EL L+ +EVE LL+D+ILD+R+ GKIDQI GFLLL G  +    +K+DA+E+W+N+L SL+  + ARV
Sbjct:   55 YQEEKEIIAMRALRSAYEANDLVSFERALLDKRNRIISDPFIMQYVEPLQRRMREQVLLVLVKPYHRIRVEFVAAELKLEVSEVELLLVDMILDKRVFGKIDQINGFLLLGGESDNVVEKKYDALEKWTNTLSSLNKNLGARV 197          
BLAST of mRNA_Ecto-sp13_S_contig6850.17808.1 vs. uniprot
Match: A0A7S2BKS2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKS2_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.240e-47
Identity = 80/143 (55.94%), Postives = 113/143 (79.02%), Query Frame = 1
Query:   43 FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGPQETATSRKHDAMERWSNSLRSLSSFVAARV 471
            +QE+ EIVAM +LR AYE NDL  FE+TL DK N+I  DPF+MTY+ PLR+R+RE VL+ L +PYK+I + F+A EL L+   VE LL+D+I+D+R++GKIDQI+GFLLL G Q + +S+K+DA+E+W  +L SL++ ++ARV
Sbjct:  330 YQEDPEIVAMRNLRSAYEANDLGSFEKTLLDKSNKIIADPFIMTYVEPLRRRMREQVLLALLRPYKRIRIEFVAQELKLEVMAVELLLVDMIMDKRIDGKIDQIQGFLLLSGDQTSVSSKKYDALEKWCTTLESLTNNLSARV 472          
BLAST of mRNA_Ecto-sp13_S_contig6850.17808.1 vs. uniprot
Match: A0A6V1ITC2_HETAK (COP9 signalosome complex subunit 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1ITC2_HETAK)

HSP 1 Score: 157 bits (397), Expect = 3.790e-43
Identity = 70/144 (48.61%), Postives = 111/144 (77.08%), Query Frame = 1
Query:   43 FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGPQETATSRKHDAMERWSNSLRSLSSFVAARVE 474
            +QE++EI AMM LR AY+ N+LAKFERTL + RNRI +DPF+M+Y+ PLR ++RE VLI L +PY K++M F++ EL ++  EVE+L++++ILD R  GKIDQI G L+L G +++  ++K++A++RWS++L  L + +  +++
Sbjct:  305 YQEDREITAMMALRQAYDANELAKFERTLREDRNRILDDPFIMSYIEPLRHKMREQVLISLVQPYNKVSMKFLSQELKMEGKEVEQLIVNMILDGRFEGKIDQINGVLVLGGQKQSIATKKYEALQRWSDALEGLRNALPQKIQ 448          
BLAST of mRNA_Ecto-sp13_S_contig6850.17808.1 vs. uniprot
Match: A0A7S2W4K8_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4K8_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.620e-42
Identity = 78/135 (57.78%), Postives = 97/135 (71.85%), Query Frame = 1
Query:   43 FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGPQETATSRKHDAMERWSNSLRSL 447
            FQEEKEIVAM  LR AYE NDL  FE TL DK NRI EDPF+MTY+ PLR+R+RE VL+ L +PY +I + F+A EL L   EVE+L++D+IL+ R+ GKIDQI+GFLLL         +K DAM  W+ SL +L
Sbjct:  352 FQEEKEIVAMRSLRTAYEANDLTTFESTLKDKSNRILEDPFIMTYVAPLRRRMREQVLLALVRPYHRIQLSFIARELELSDEEVERLVVDMILEGRVQGKIDQIKGFLLLGDRSNVLAVKKFDAMASWAKSLEAL 486          
BLAST of mRNA_Ecto-sp13_S_contig6850.17808.1 vs. uniprot
Match: A0A836CJA4_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA4_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.260e-40
Identity = 70/143 (48.95%), Postives = 106/143 (74.13%), Query Frame = 1
Query:   43 FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGPQETATSRKHDAMERWSNSLRSLSSFVAARV 471
            +QEEKE+ AMM+LRMAYE NDLA+FE+TL +K NRI +D F+M Y+ PL++R+RE VL+ + +PY++I + FMA EL+L    VE LL++LILD RL+G IDQ++GFL +       + +K++A+  WS+ LR  ++ + +R+
Sbjct:  265 YQEEKEVAAMMELRMAYETNDLARFEKTLQNKANRILDDNFIMAYVEPLKRRMREQVLLAIVRPYRRINLAFMARELNLPEPAVEGLLVELILDERLSGSIDQLQGFLQVGEDDADNSPKKYEALMGWSDELRKATTALTSRI 407          
BLAST of mRNA_Ecto-sp13_S_contig6850.17808.1 vs. uniprot
Match: A0A7S2V3G5_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3G5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.790e-39
Identity = 72/160 (45.00%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   43 FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLD---------GPQETATS-------RKHDAMERWSNSLRSLSSFVAARVE 474
            +Q+ +EI+ MM+LR AY+ +DL +FERTL D+RNRI +DPF+M Y+ PLRQR+RE V++ LC+PYK I +  +A EL+ +  EVEK+++ +ILD RL+GKIDQI   LLL+            ET ++       +K+DA+ +W+ S+ SLS  +  R++
Sbjct:   59 YQDAQEILGMMELRAAYDASDLGRFERTLRDRRNRILDDPFIMAYVAPLRQRMREQVVLRLCRPYKCILLKTLAKELAQEVQEVEKIVVAMILDGRLSGKIDQIAQALLLNKSFGSTAGSSSSETGSALTLSSNTKKYDALNQWTASVESLSQCIGERMQ 218          
BLAST of mRNA_Ecto-sp13_S_contig6850.17808.1 vs. uniprot
Match: W7U093_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U093_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.150e-35
Identity = 65/133 (48.87%), Postives = 100/133 (75.19%), Query Frame = 1
Query:   43 FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGPQETATSRKHDAMERWSNSLR 441
            +Q+++E++AMM+LR+AY+ NDL +FERTL  K N I +D F+  Y+  LR+R+RE VL+ + +PY K+T+  +A EL L   E+E LL+DLILD+R+ G+IDQI GF+LL  P+  ++S KH A+ RW+++L+
Sbjct:  307 YQDDREVMAMMELRIAYDANDLPRFERTLEHKPNHILDDSFMAVYIEELRRRMREQVLLSITQPYSKMTLAHVAKELRLSREEIESLLVDLILDKRIKGQIDQIGGFVLLR-PEGRSSSGKHAALARWADALQ 438          
BLAST of mRNA_Ecto-sp13_S_contig6850.17808.1 vs. uniprot
Match: A0A7S3M6V7_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6V7_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.170e-35
Identity = 62/111 (55.86%), Postives = 91/111 (81.98%), Query Frame = 1
Query:   43 FQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLD 375
            F ++KEIVAM DLR   E NDLA+FERT+ +K+N+I ++PF+MTY+ PLR+R+RE VL++L +PYKK+T+ F+A EL+L   EVE LL+D+ILD++L+  IDQI+G ++L+
Sbjct:  212 FSDDKEIVAMSDLRQCLEANDLARFERTIKNKQNKILDEPFLMTYIQPLRRRMREQVLLNLTRPYKKVTVAFLARELALNVDEVESLLVDMILDQKLSAHIDQIKGHVILE 322          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6850.17808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRR5_ECTSI2.350e-9398.62COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
A0A6H5JKQ1_9PHAE1.070e-9197.93COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
A0A7S2B813_9STRA3.590e-5057.34COP9 signalosome complex subunit 2 n=1 Tax=Florenc... [more]
A0A7S2BKS2_9STRA3.240e-4755.94COP9 signalosome complex subunit 2 n=1 Tax=Dictyoc... [more]
A0A6V1ITC2_HETAK3.790e-4348.61COP9 signalosome complex subunit 2 n=1 Tax=Heteros... [more]
A0A7S2W4K8_9STRA1.620e-4257.78COP9 signalosome complex subunit 2 n=2 Tax=Rhizoch... [more]
A0A836CJA4_9STRA1.260e-4048.95COP9 signalosome complex subunit 2 n=1 Tax=Tribone... [more]
A0A7S2V3G5_9STRA1.790e-3945.00COP9 signalosome complex subunit 2 n=1 Tax=Fibroca... [more]
W7U093_9STRA1.150e-3548.87COP9 signalosome complex subunit 2 n=2 Tax=Monodop... [more]
A0A7S3M6V7_9STRA1.170e-3555.86COP9 signalosome complex subunit 2 n=1 Tax=Spumell... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6850contigEcto-sp13_S_contig6850:16..1028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score284.3
Seed ortholog evalue3.6e-74
Seed eggNOG ortholog2880.D7FRR5
Preferred nameCOPS2
Model size480
KEGG koko:K12176
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0003712,GO:0003714,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007399,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008180,GO:0008230,GO:0008231,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0014706,GO:0016043,GO:0016070,GO:0016333,GO:0016922,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030182,GO:0030582,GO:0030584,GO:0030718,GO:0030727,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035914,GO:0036099,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044798,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051427,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060537,GO:0060538,GO:0060968,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0080090,GO:0090052,GO:0090054,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons2
EggNOG free text desc.protein deneddylation
EggNOG OGsCOG5159@1,KOG1464@2759
Ec32 ortholog descriptionPCI domain protein
Ec32 orthologEc-00_003560.1
Cds size480
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463941.1802566-CDS-Ecto-sp13_S_contig6850:15..2821681463941.1802566-CDS-Ecto-sp13_S_contig6850:15..282Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6850 16..282 +
1681463941.1940792-CDS-Ecto-sp13_S_contig6850:815..10281681463941.1940792-CDS-Ecto-sp13_S_contig6850:815..1028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6850 816..1028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6850.17808.1prot_Ecto-sp13_S_contig6850.17808.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6850 16..1028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6850.17808.1

>prot_Ecto-sp13_S_contig6850.17808.1 ID=prot_Ecto-sp13_S_contig6850.17808.1|Name=mRNA_Ecto-sp13_S_contig6850.17808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
MNNTSLPLNRTLRRFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRI
TEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEK
LLIDLILDRRLNGKIDQIEGFLLLDGPQETATSRKHDAMERWSNSLRSLS
SFVAARVEC*
back to top

mRNA from alignment at Ecto-sp13_S_contig6850:16..1028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6850.17808.1 ID=mRNA_Ecto-sp13_S_contig6850.17808.1|Name=mRNA_Ecto-sp13_S_contig6850.17808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1013bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6850:16..1028+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATAACACCTCCCTCCCCCTCAACCGAACGTTACGCAGGTTCCAGGA GGAGAAGGAGATCGTGGCGATGATGGACCTGCGCATGGCGTACGAGGGGA ACGACCTGGCCAAGTTCGAGCGGACGCTGCACGACAAGCGCAACCGCATC ACAGAGGACCCCTTCGTCATGACCTACCTAGGACCCCTCAGGCAGCGCAT CCGGGAGTCGGTGCTCATCCACCTCTGCAAGCCGTACAAGAAGATCACGA TGGGGTTCATGGCGGGGGTGAGTGTGGTTAACCTTTGACTGACGTTCGTG TGCCTACAGTATCCGGATCCAGCCGAATTTCTGGTTCGGCTGGACCCACT CGCTTCTTTCCTTTTGCGGGCGGGGTTGCGTGGGCGAGGTGTCTGGGAGC GCTCCTCCTGGGAGACGTCTTGGTTTGTGGCTGTGGTGCATGGCCGGTGT CTGGGAGCTGTTCGCTGATGGGTGGCATCCGTTGTCTCCTGGTGCCTTTC TTTGGGTTTGCTACATGGCTGTGGCCACGGAGACTCGAGTACGGCAGTAG TGGCTCCGATGTGAGAGTGTGGTGCGACCATGGCCCTCGACTGTCTTGTG TCGGAGCCCCCTCTTATACCGGAATATGAGGGTACCCAACTTTACCACGT GGATCAAGTCCGTGACAACCGATTTCTACTCTCGTATATCGGACCCCCGT AATATCAGGAACCCTGTTGCTTCGGAGCCACGACTATAATTATGATTTGG GTCAGAGTCATCAAATAGTTCTTGCTTGCATTTTTATCTTCTGGTTGCAG GAGCTGAGCTTAAAGACGGCGGAGGTGGAGAAGCTGCTGATCGACCTCAT CCTGGACCGCCGGCTCAACGGTAAGATCGACCAGATCGAGGGCTTCTTGC TGCTGGACGGGCCACAGGAGACGGCCACCTCCCGCAAGCACGACGCCATG GAACGGTGGAGCAACTCCCTCCGGTCCCTCTCGTCCTTCGTGGCGGCGAG GGTGGAGTGCTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6850:16..1028+

>mRNA_Ecto-sp13_S_contig6850.17808.1 ID=mRNA_Ecto-sp13_S_contig6850.17808.1|Name=mRNA_Ecto-sp13_S_contig6850.17808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6850:16..1028+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATAACACCTCCCTCCCCCTCAACCGAACGTTACGCAGGTTCCAGGA
GGAGAAGGAGATCGTGGCGATGATGGACCTGCGCATGGCGTACGAGGGGA
ACGACCTGGCCAAGTTCGAGCGGACGCTGCACGACAAGCGCAACCGCATC
ACAGAGGACCCCTTCGTCATGACCTACCTAGGACCCCTCAGGCAGCGCAT
CCGGGAGTCGGTGCTCATCCACCTCTGCAAGCCGTACAAGAAGATCACGA
TGGGGTTCATGGCGGGGGAGCTGAGCTTAAAGACGGCGGAGGTGGAGAAG
CTGCTGATCGACCTCATCCTGGACCGCCGGCTCAACGGTAAGATCGACCA
GATCGAGGGCTTCTTGCTGCTGGACGGGCCACAGGAGACGGCCACCTCCC
GCAAGCACGACGCCATGGAACGGTGGAGCAACTCCCTCCGGTCCCTCTCG
TCCTTCGTGGCGGCGAGGGTGGAGTGCTAG
back to top