mRNA_Ecto-sp13_S_contig685.17806.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig685.17806.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE) HSP 1 Score: 233 bits (595), Expect = 1.470e-70 Identity = 108/118 (91.53%), Postives = 114/118 (96.61%), Query Frame = 2
Query: 173 MSNPVTQPDIVFRLMEFVGGERYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREEHECPWDEDTCSYASENGHADVLRWAFANG 526
M NP+ QPDIVFRLMEFVGGE+Y+FFAGVSRTWRDAWEGRPTTTRA TADTGVPQLSQSF+CGLAPRSTVCRDIAALGRLDLLVSARE+HECPWDE+TCS ASENGHADVLRWAFANG
Sbjct: 1 MPNPLMQPDIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAPRSTVCRDIAALGRLDLLVSAREQHECPWDEETCSCASENGHADVLRWAFANG 118
BLAST of mRNA_Ecto-sp13_S_contig685.17806.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI) HSP 1 Score: 214 bits (545), Expect = 1.040e-62 Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 2
Query: 215 MEFVGGERYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREEHECPWDEDTCSYASENGHADVLRWAFANG 526
MEFVGGE+YLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLA RSTVC+DIAALGRLDLLVSAREE+ECPWDEDTCSYASENGHADVLRWAFANG
Sbjct: 1 MEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLARRSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYASENGHADVLRWAFANG 104
BLAST of mRNA_Ecto-sp13_S_contig685.17806.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE) HSP 1 Score: 110 bits (276), Expect = 2.310e-24 Identity = 55/91 (60.44%), Postives = 63/91 (69.23%), Query Frame = 2
Query: 197 DIVFRLMEFVGGERYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREEHECPWDEDTC 469
DIV + EFV +YLFFA VSR WRD W RPT T+A+TADT VPQLS SFECGL + VC +A LGRLDLL AR C W+E+TC
Sbjct: 8 DIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMG-CQWNENTC 97
BLAST of mRNA_Ecto-sp13_S_contig685.17806.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE) HSP 1 Score: 109 bits (272), Expect = 2.620e-23 Identity = 53/86 (61.63%), Postives = 61/86 (70.93%), Query Frame = 2
Query: 212 LMEFVGGERYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREEHECPWDEDTC 469
L EFV ++LFFA VSR WRD W RPT T+A+TADT VPQLS SFECGL + VC +A LGRLDLL AR CPW+E+TC
Sbjct: 31 LAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMG-CPWNENTC 115
BLAST of mRNA_Ecto-sp13_S_contig685.17806.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI) HSP 1 Score: 110 bits (274), Expect = 5.130e-23 Identity = 55/91 (60.44%), Postives = 63/91 (69.23%), Query Frame = 2
Query: 197 DIVFRLMEFVGGERYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREEHECPWDEDTC 469
DIV + EFV +YLFFA VSR WRD W RPT T+A+TADT V QLS SFECGL + VC +A LGRLDLL AR CPW+E+TC
Sbjct: 10 DIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMG-CPWNENTC 99
BLAST of mRNA_Ecto-sp13_S_contig685.17806.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI) HSP 1 Score: 109 bits (273), Expect = 2.600e-22 Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 2
Query: 191 QPDIVFRLMEFVGGERYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREEHECPWDEDTC 469
Q D+ L+EFV E++LFFAGV R W++AW RP TTRAVT DT V QLSQ+F+CGL+ + VC +A LGRLDLL AR H C W+E TC
Sbjct: 8 QSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARR-HGCAWNEVTC 99
BLAST of mRNA_Ecto-sp13_S_contig685.17806.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 2.060e-19 Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 2
Query: 173 MSNPV-TQPDIVFRLMEFVGGERYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAPRST-VCRDIAALGRLDLLVSAREEHECPWDEDTC 469
M NP D++ EFV +++LFFA VSR WR AW GRPT+TRA+T DT QL S +CGL+P T VC IA+LGRLDLL +AR WD+ TC
Sbjct: 1 MGNPFQATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALG-FRWDKMTC 100
BLAST of mRNA_Ecto-sp13_S_contig685.17806.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 6.770e-12 Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 2
Query: 197 DIVFRLMEFVGGERYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLA-PRSTVCRDIAALGRLDLLVSAREEHECPWDEDTCSYAS 481
D++ ++ FV +++LFFA VSR WR+AW RP T VT D+ V QL SFE GL R +C IA LG L+LL SAR C W+ T S A+
Sbjct: 62 DLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSG-CAWNGLTFSEAA 156
BLAST of mRNA_Ecto-sp13_S_contig685.17806.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 1.110e-11 Identity = 49/102 (48.04%), Postives = 58/102 (56.86%), Query Frame = 2
Query: 185 VTQPDIVFRLMEFVGGERYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAPRSTV--CRDIAALGRLDLLVSAREEHECPWDEDTCSYASE 484
+T DIV L +FV +++LFFA VSR+WRDAW R T T VT T QL SF CGLA R V C A G LDLL A E+ CPW + A+E
Sbjct: 20 MTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLA-RDGVDWCLTTARAGNLDLLRWATEQG-CPWTRSLSAAAAE 119
BLAST of mRNA_Ecto-sp13_S_contig685.17806.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 2.200e-7 Identity = 43/121 (35.54%), Postives = 57/121 (47.11%), Query Frame = 2
Query: 164 PESMSNPVTQPDIVFRLMEFVGGERYLFFAGVSRTWRDAWE-GRPTTTRAVTADTGVPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREEHECPWDEDTCSYASENGHADV---LRWA 514
P + NP+ P I+ L+ F +LF AGVSR+WRDAW RP T A +L + GL +VC A+ G L L AR CPWD C+ A+ V ++WA
Sbjct: 721 PSAPVNPLADPTILRHLISFAARNGFLFVAGVSRSWRDAWGVERPPETEVDAAVQSPSRLGWARASGLGWGPSVCARAASGGHLATLRYARALG-CPWDWTCCALATTKALVPVSTMIQWA 840 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig685.17806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig685.17806.1 >prot_Ecto-sp13_S_contig685.17806.1 ID=prot_Ecto-sp13_S_contig685.17806.1|Name=mRNA_Ecto-sp13_S_contig685.17806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=285bp MSNPVTQPDIVFRLMEFVGGERYLFFAGVSRTWRDAWEGRPTTTRAVTADback to top mRNA from alignment at Ecto-sp13_S_contig685:6916..8927- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig685.17806.1 ID=mRNA_Ecto-sp13_S_contig685.17806.1|Name=mRNA_Ecto-sp13_S_contig685.17806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2012bp|location=Sequence derived from alignment at Ecto-sp13_S_contig685:6916..8927- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig685:6916..8927- >mRNA_Ecto-sp13_S_contig685.17806.1 ID=mRNA_Ecto-sp13_S_contig685.17806.1|Name=mRNA_Ecto-sp13_S_contig685.17806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=855bp|location=Sequence derived from alignment at Ecto-sp13_S_contig685:6916..8927- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |