mRNA_Ecto-sp13_S_contig6842.17801.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: A0A6H5JBE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE6_9PHAE) HSP 1 Score: 516 bits (1328), Expect = 3.750e-179 Identity = 265/288 (92.01%), Postives = 272/288 (94.44%), Query Frame = -1
Query: 1 GEEELLVSVVAVSLKKKKGRKEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQSRGDGGDGYGNQEELWERQLVDRETREKAEEVVAVVKVAFPGEFQR 864
GEEELLVSVV + KGRKE FLPAFEAVMRPLV+QLLDPAA AAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLAL R+D G DNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCH RVVDLAFARHELFFGGGGDG HAAAVVPKLVTA+AGMMEYQSRG+GGDGYG+QEELWERQLVDRETREKAEEVVA+VK FPGEFQR
Sbjct: 286 GEEELLVSVVDATGWMIKGRKETFLPAFEAVMRPLVVQLLDPAAVAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALARKDPGDDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHRRVVDLAFARHELFFGGGGDGALHAAAVVPKLVTAMAGMMEYQSRGNGGDGYGSQEELWERQLVDRETREKAEEVVALVKAVFPGEFQR 573
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: D7FNE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE2_ECTSI) HSP 1 Score: 524 bits (1350), Expect = 6.540e-176 Identity = 272/288 (94.44%), Postives = 275/288 (95.49%), Query Frame = -1
Query: 1 GEEELLVSVVAVSLKKKKGRKEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQSRGDGGDGYGNQEELWERQLVDRETREKAEEVVAVVKVAFPGEFQR 864
GEEELLVSVV + KGRKEAFLPAFEAVMRPLVLQLLDPAA AAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVR+D GGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCH RVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQSRG GGDGYG+QEELWERQLVDRETREKAEEVVAVVK AF G FQR
Sbjct: 808 GEEELLVSVVDATGWMIKGRKEAFLPAFEAVMRPLVLQLLDPAAPAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRKDPGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHRRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQSRGAGGDGYGSQEELWERQLVDRETREKAEEVVAVVKTAFAGGFQR 1095
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: D8LD05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD05_ECTSI) HSP 1 Score: 265 bits (676), Expect = 2.990e-78 Identity = 176/350 (50.29%), Postives = 203/350 (58.00%), Query Frame = -1
Query: 4 GEEELLVSVVAVSLKKKKGRKEAFLPAFEAVMRPLVLQLLDP--AAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDN-----DDD-----------------------DGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPA----VVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVT------AIAGMMEYQ--------------------SRGDGGDGYGN---QEELWERQLVDRETREKAEEVVAVVKVAFPGEFQ 864
GEEE+LVSV + +GRK AFLP FEAV+RPLVL LLD AA AA+P SHRSF L +AIDVLE GEGGR +VF PLLPALLQG R +D AAS RQ CAYGLGVAA+ GG +FD HSAEAL LLLALV + GG ++D D W GA+ DNA+SAAFRVL RPGPV AAF VGSLLD+LPI VDV E VCH RVVD A +RHELFFG A+AGM+ YQ S G G GYG +EELW RQLVD+ETR+KAEEV+ ++ +P F+
Sbjct: 581 GEEEMLVSVADATGWMIRGRKAAFLPTFEAVLRPLVLPLLDSTAAAAAALPSSHRSFALSIAIDVLELAGEGGRRAVFPEPLLPALLQGCR-EDELAASARQVCAYGLGVAADFGGPEFDPHSAEALRLLLALVAQGRGGSTAGPAQEEDXXXXXXXXXXXXXXXXXXXXXXXDRWENGALTDNAISAAFRVLFARPGPVDAAFAAVPMSGFVGSLLDALPIVVDVEEAHVCHRRVVDHALSRHELFFGXXXXXXXXXXXXXXXXXXXXXXXXALAGMVRYQPSPEXXXXXXXXXXXXXLLPSYGRSGGGYGAGDPEEELWARQLVDKETRQKAEEVLVRIEGEYPKVFE 929
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: B4GFA9_DROPE (GL21654 n=5 Tax=obscura group TaxID=32355 RepID=B4GFA9_DROPE) HSP 1 Score: 79.7 bits (195), Expect = 5.650e-13 Identity = 65/216 (30.09%), Postives = 103/216 (47.69%), Query Frame = -1
Query: 157 KEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIA 804
K FLPAFE V P ++LLDP+ PP+ R +G+C+ D++E CG + +Q PALLQ P RQA AYG GV A+ GG+ F A+ + LL+ ++ + ++ + +NA+SA ++L + + ++G LPI+ D E +G + DL A H + G +P++V+ IA
Sbjct: 855 KALFLPAFEQVA-PHFVKLLDPSR----PPTDRQWGVCVFDDLIEFCGPAC--APYQQIFTPALLQYVGDKSP---EVRQAAAYGCGVLAQFGGEQFAVTCAQIIPLLVQVINDPKAREIENIN------ATENAISAFAKILKYNKSALSNV--DELIGVWFSWLPISEDPEEATHIYGYMCDLIEANHPVILGANNSN-------LPRIVSIIA 1045
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: UPI0018644CE2 (importin-5-like n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018644CE2) HSP 1 Score: 69.3 bits (168), Expect = 1.690e-9 Identity = 67/229 (29.26%), Postives = 106/229 (46.29%), Query Frame = -1
Query: 124 KEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQS--RGDG 804
KE LP FE ++ PL++ L+ P P + R +GLC+ DV+EHC + L LLQ P RQA AYG+GV A+ GG+++ + AEA+ LL+ +++ D +N +SA +V+ +RP V + V+ L LP+ D E + + DL + + + G A +PK+ IA + +S RG+G
Sbjct: 850 KEKVLPWFEQLL-PLIVNLICPQR----PWADRQWGLCIFDDVVEHCSPSSFK--YAEYFLQPLLQSVCDSSP---EVRQAAAYGVGVMAQCGGENYRSFCAEAIPLLVGVIQAA------DSKAKENINATENCISAVGKVIKYRPECVNVS---EVLPHWLSWLPLKEDKEEAEHTFNLLCDLIESNNSIALGPDN-------ANLPKIFLIIADGVINESIKRGEG 1052
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: A0A397W0E3_9GLOM (Armadillo-type protein n=3 Tax=Gigaspora TaxID=4873 RepID=A0A397W0E3_9GLOM) HSP 1 Score: 68.6 bits (166), Expect = 3.030e-9 Identity = 58/220 (26.36%), Postives = 106/220 (48.18%), Query Frame = -1
Query: 160 KGRKEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGG--RNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAI 813
K + ++LP+F+ ++ P+V L A P+ R + LC+ DV+E G ++ F ++ +L+ A+ RQA AYG+GV A+ GG+++ AEAL L ++ D G +++ + +NA+SA ++L V V+ + SLPI D E + + ++DL A+H L G + A + ++++A+
Sbjct: 854 KTHRTSYLPSFDKLL-PIVSMFL-----ADANPAARQWALCVIDDVIEFTGPASWVYHTHFLEKMIASLMD-------IASDVRQAAAYGIGVCAQFGGENYSEAVAEALNNLFQVINSD--GSRREENIY----ATENAISAITKILKFNNSKVDVN---TVLPAWFASLPIIYDEEEAALTYTYLLDLLEAQHPLILGNNNENIPRIARIFTEVLSAM 1051
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: A0A7C8I7G3_9PLEO (Armadillo-type protein n=1 Tax=Massariosphaeria phaeospora TaxID=100035 RepID=A0A7C8I7G3_9PLEO) HSP 1 Score: 66.2 bits (160), Expect = 1.770e-8 Identity = 62/226 (27.43%), Postives = 102/226 (45.13%), Query Frame = -1
Query: 136 KGRKEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQS 813
K FLP +E +M+ + A P+ R + +C+ DVLE G ++ +Q ++ L+ G + D PA RQA AYG+GVAA+ GG + +A L L + +R + DDDD + +NA ++ +VL P V V + +D+LP+T D + + L ++ F A VPK+ T +A +E ++
Sbjct: 855 KNEGPGFLPHWELLMQYYKM------AAVNRDPTQRQWAICIFDDVLEF--SGAQSQTYQEHIMQPLIDGMQDDVPA---NRQAAAYGVGVAAQKGGDAWSDFTAACLPTLFQVAQRASA--RDDDDVF----ATENACASIAKVLQFNPTKVQNW--QDVAAAWIDTLPVTNDEEAAPFAYSFLAQLIEQQNPAVF-----------AQVPKVFTLVAQALEAET 1050
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: UPI0014554373 (importin-5 n=1 Tax=Fukomys damarensis TaxID=885580 RepID=UPI0014554373) HSP 1 Score: 64.7 bits (156), Expect = 1.960e-8 Identity = 62/216 (28.70%), Postives = 96/216 (44.44%), Query Frame = -1
Query: 157 KEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIA 804
KE LP FE ++ PL++ L+ P P R +GLC+ DV+EHC + L +LQ + P RQA AYGLGV A+ GG ++ EAL LL+ +++ GD+ + +N +SA +++ +P V V+ L LP+ D E + DL + H + G +PK+ + IA
Sbjct: 31 KEKVLPWFEQLL-PLIVNLICPHR----PWPDRQWGLCIFDDVIEHCSPASFK--YAEYFLRPMLQYVCDNSP---EVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQS---GDSKTKENVN---ATENCISAVGKIMKFKPNCVNVE---EVLPHWLSWLPLHEDKEEAVQTFSYLCDLIESNHPIVLGPNNTN-------LPKIFSIIA 220
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: H3B691_LATCH (Importin N-terminal domain-containing protein n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3B691_LATCH) HSP 1 Score: 64.7 bits (156), Expect = 5.740e-8 Identity = 59/223 (26.46%), Postives = 100/223 (44.84%), Query Frame = -1
Query: 136 KEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQS 804
KE LP FE ++ PL++ L+ P P R +GLC+ DV+EHC + L +LQ + P RQA AYG+GV A+ GG+++ EA+ LL+ +++ ++ + +N +SA +++ HRP V V+ L LP+ D E + DL + + + G +P++ IA + Y++
Sbjct: 851 KEKVLPWFEQLL-PLIVNLICPHR----PWPDRQWGLCIFDDVIEHCSPSSFK--YAEYFLRPMLQSVCDNSP---EVRQAAAYGIGVMAQFGGENYRQFCTEAIPLLVGVIQAAESKAKENIN------ATENCISAVGKIMKHRPECVNVN---EVLPHWLSWLPVQEDREEAVHTFSYLCDLIESNNPIVLGPNNSN-------LPRIFCIIADGIVYEA 1047
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: U9U8L3_RHIID (Uncharacterized protein (Fragment) n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9U8L3_RHIID) HSP 1 Score: 63.5 bits (153), Expect = 9.930e-8 Identity = 60/224 (26.79%), Postives = 103/224 (45.98%), Query Frame = -1
Query: 166 AFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRN--SVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGA-VRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFH----------AAAVVPKLVT 798
++LP+F+ ++ + L L D P+ R + LC+ D++E G N + F ++ +LL A+ RQA AYG+GV A+ GG+++ A AL L ++ N +D E +NA+SA ++L AV+ L+SLPI D E + + ++DL ++H G + FH A+A++P+ V+
Sbjct: 215 SYLPSFDKLLPIVTLFLAD------ANPAARQWALCVLDDIVEFTGPASWNYHTHFLEKMIASLLD-------IASDVRQAAAYGIGVCAQFGGENYADAVAAALTPLFQVI-------NSEDSRKEENVYATENAISAITKILKFNNSKFDVN---AVIPIWLNSLPIRYDEVEAALTYTYLLDLLESQHPAILGNNNE-NFHNIILIFIDVLASAILPEAVS 414 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6842.17801.1 >prot_Ecto-sp13_S_contig6842.17801.1 ID=prot_Ecto-sp13_S_contig6842.17801.1|Name=mRNA_Ecto-sp13_S_contig6842.17801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp PLELPWKRHLHHRHDLLRLLPRLPVDELPLPQLFLVAVAVPAIPPRLVLHback to top mRNA from alignment at Ecto-sp13_S_contig6842:7072..7935+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6842.17801.1 ID=mRNA_Ecto-sp13_S_contig6842.17801.1|Name=mRNA_Ecto-sp13_S_contig6842.17801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6842:7072..7935+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6842:7072..7935+ >mRNA_Ecto-sp13_S_contig6842.17801.1 ID=mRNA_Ecto-sp13_S_contig6842.17801.1|Name=mRNA_Ecto-sp13_S_contig6842.17801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6842:7072..7935+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |