mRNA_Ecto-sp13_S_contig6842.17801.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6842.17801.1
Unique NamemRNA_Ecto-sp13_S_contig6842.17801.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: A0A6H5JBE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE6_9PHAE)

HSP 1 Score: 516 bits (1328), Expect = 3.750e-179
Identity = 265/288 (92.01%), Postives = 272/288 (94.44%), Query Frame = -1
Query:    1 GEEELLVSVVAVSLKKKKGRKEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQSRGDGGDGYGNQEELWERQLVDRETREKAEEVVAVVKVAFPGEFQR 864
            GEEELLVSVV  +    KGRKE FLPAFEAVMRPLV+QLLDPAA AAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLAL R+D G DNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCH RVVDLAFARHELFFGGGGDG  HAAAVVPKLVTA+AGMMEYQSRG+GGDGYG+QEELWERQLVDRETREKAEEVVA+VK  FPGEFQR
Sbjct:  286 GEEELLVSVVDATGWMIKGRKETFLPAFEAVMRPLVVQLLDPAAVAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALARKDPGDDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHRRVVDLAFARHELFFGGGGDGALHAAAVVPKLVTAMAGMMEYQSRGNGGDGYGSQEELWERQLVDRETREKAEEVVALVKAVFPGEFQR 573          
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: D7FNE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE2_ECTSI)

HSP 1 Score: 524 bits (1350), Expect = 6.540e-176
Identity = 272/288 (94.44%), Postives = 275/288 (95.49%), Query Frame = -1
Query:    1 GEEELLVSVVAVSLKKKKGRKEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQSRGDGGDGYGNQEELWERQLVDRETREKAEEVVAVVKVAFPGEFQR 864
            GEEELLVSVV  +    KGRKEAFLPAFEAVMRPLVLQLLDPAA AAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVR+D GGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCH RVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQSRG GGDGYG+QEELWERQLVDRETREKAEEVVAVVK AF G FQR
Sbjct:  808 GEEELLVSVVDATGWMIKGRKEAFLPAFEAVMRPLVLQLLDPAAPAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRKDPGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHRRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQSRGAGGDGYGSQEELWERQLVDRETREKAEEVVAVVKTAFAGGFQR 1095          
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: D8LD05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD05_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 2.990e-78
Identity = 176/350 (50.29%), Postives = 203/350 (58.00%), Query Frame = -1
Query:    4 GEEELLVSVVAVSLKKKKGRKEAFLPAFEAVMRPLVLQLLDP--AAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDN-----DDD-----------------------DGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPA----VVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVT------AIAGMMEYQ--------------------SRGDGGDGYGN---QEELWERQLVDRETREKAEEVVAVVKVAFPGEFQ 864
            GEEE+LVSV   +    +GRK AFLP FEAV+RPLVL LLD   AA AA+P SHRSF L +AIDVLE  GEGGR +VF  PLLPALLQG R +D  AAS RQ CAYGLGVAA+ GG +FD HSAEAL LLLALV +  GG       ++D                       D W  GA+ DNA+SAAFRVL  RPGPV AAF        VGSLLD+LPI VDV E  VCH RVVD A +RHELFFG                        A+AGM+ YQ                    S G  G GYG    +EELW RQLVD+ETR+KAEEV+  ++  +P  F+
Sbjct:  581 GEEEMLVSVADATGWMIRGRKAAFLPTFEAVLRPLVLPLLDSTAAAAAALPSSHRSFALSIAIDVLELAGEGGRRAVFPEPLLPALLQGCR-EDELAASARQVCAYGLGVAADFGGPEFDPHSAEALRLLLALVAQGRGGSTAGPAQEEDXXXXXXXXXXXXXXXXXXXXXXXDRWENGALTDNAISAAFRVLFARPGPVDAAFAAVPMSGFVGSLLDALPIVVDVEEAHVCHRRVVDHALSRHELFFGXXXXXXXXXXXXXXXXXXXXXXXXALAGMVRYQPSPEXXXXXXXXXXXXXLLPSYGRSGGGYGAGDPEEELWARQLVDKETRQKAEEVLVRIEGEYPKVFE 929          
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: B4GFA9_DROPE (GL21654 n=5 Tax=obscura group TaxID=32355 RepID=B4GFA9_DROPE)

HSP 1 Score: 79.7 bits (195), Expect = 5.650e-13
Identity = 65/216 (30.09%), Postives = 103/216 (47.69%), Query Frame = -1
Query:  157 KEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIA 804
            K  FLPAFE V  P  ++LLDP+     PP+ R +G+C+  D++E CG     + +Q    PALLQ      P     RQA AYG GV A+ GG+ F    A+ + LL+ ++      + ++ +        +NA+SA  ++L +    +       ++G     LPI+ D  E    +G + DL  A H +  G            +P++V+ IA
Sbjct:  855 KALFLPAFEQVA-PHFVKLLDPSR----PPTDRQWGVCVFDDLIEFCGPAC--APYQQIFTPALLQYVGDKSP---EVRQAAAYGCGVLAQFGGEQFAVTCAQIIPLLVQVINDPKAREIENIN------ATENAISAFAKILKYNKSALSNV--DELIGVWFSWLPISEDPEEATHIYGYMCDLIEANHPVILGANNSN-------LPRIVSIIA 1045          
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: UPI0018644CE2 (importin-5-like n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018644CE2)

HSP 1 Score: 69.3 bits (168), Expect = 1.690e-9
Identity = 67/229 (29.26%), Postives = 106/229 (46.29%), Query Frame = -1
Query:  124 KEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQS--RGDG 804
            KE  LP FE ++ PL++ L+ P      P + R +GLC+  DV+EHC        +    L  LLQ      P     RQA AYG+GV A+ GG+++ +  AEA+ LL+ +++        D          +N +SA  +V+ +RP  V  +    V+   L  LP+  D  E +     + DL  + + +  G          A +PK+   IA  +  +S  RG+G
Sbjct:  850 KEKVLPWFEQLL-PLIVNLICPQR----PWADRQWGLCIFDDVVEHCSPSSFK--YAEYFLQPLLQSVCDSSP---EVRQAAAYGVGVMAQCGGENYRSFCAEAIPLLVGVIQAA------DSKAKENINATENCISAVGKVIKYRPECVNVS---EVLPHWLSWLPLKEDKEEAEHTFNLLCDLIESNNSIALGPDN-------ANLPKIFLIIADGVINESIKRGEG 1052          
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: A0A397W0E3_9GLOM (Armadillo-type protein n=3 Tax=Gigaspora TaxID=4873 RepID=A0A397W0E3_9GLOM)

HSP 1 Score: 68.6 bits (166), Expect = 3.030e-9
Identity = 58/220 (26.36%), Postives = 106/220 (48.18%), Query Frame = -1
Query:  160 KGRKEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGG--RNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAI 813
            K  + ++LP+F+ ++ P+V   L     A   P+ R + LC+  DV+E  G      ++ F   ++ +L+         A+  RQA AYG+GV A+ GG+++    AEAL  L  ++  D  G   +++ +      +NA+SA  ++L      V       V+ +   SLPI  D  E  + +  ++DL  A+H L  G   +     A +  ++++A+
Sbjct:  854 KTHRTSYLPSFDKLL-PIVSMFL-----ADANPAARQWALCVIDDVIEFTGPASWVYHTHFLEKMIASLMD-------IASDVRQAAAYGIGVCAQFGGENYSEAVAEALNNLFQVINSD--GSRREENIY----ATENAISAITKILKFNNSKVDVN---TVLPAWFASLPIIYDEEEAALTYTYLLDLLEAQHPLILGNNNENIPRIARIFTEVLSAM 1051          
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: A0A7C8I7G3_9PLEO (Armadillo-type protein n=1 Tax=Massariosphaeria phaeospora TaxID=100035 RepID=A0A7C8I7G3_9PLEO)

HSP 1 Score: 66.2 bits (160), Expect = 1.770e-8
Identity = 62/226 (27.43%), Postives = 102/226 (45.13%), Query Frame = -1
Query:  136 KGRKEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQS 813
            K     FLP +E +M+   +      A     P+ R + +C+  DVLE    G ++  +Q  ++  L+ G + D PA    RQA AYG+GVAA+ GG  +   +A  L  L  + +R +    DDDD +      +NA ++  +VL   P  V       V  + +D+LP+T D       +  +  L   ++   F           A VPK+ T +A  +E ++
Sbjct:  855 KNEGPGFLPHWELLMQYYKM------AAVNRDPTQRQWAICIFDDVLEF--SGAQSQTYQEHIMQPLIDGMQDDVPA---NRQAAAYGVGVAAQKGGDAWSDFTAACLPTLFQVAQRASA--RDDDDVF----ATENACASIAKVLQFNPTKVQNW--QDVAAAWIDTLPVTNDEEAAPFAYSFLAQLIEQQNPAVF-----------AQVPKVFTLVAQALEAET 1050          
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: UPI0014554373 (importin-5 n=1 Tax=Fukomys damarensis TaxID=885580 RepID=UPI0014554373)

HSP 1 Score: 64.7 bits (156), Expect = 1.960e-8
Identity = 62/216 (28.70%), Postives = 96/216 (44.44%), Query Frame = -1
Query:  157 KEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIA 804
            KE  LP FE ++ PL++ L+ P      P   R +GLC+  DV+EHC        +    L  +LQ    + P     RQA AYGLGV A+ GG ++     EAL LL+ +++    GD+   +        +N +SA  +++  +P  V       V+   L  LP+  D  E       + DL  + H +  G            +PK+ + IA
Sbjct:   31 KEKVLPWFEQLL-PLIVNLICPHR----PWPDRQWGLCIFDDVIEHCSPASFK--YAEYFLRPMLQYVCDNSP---EVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQS---GDSKTKENVN---ATENCISAVGKIMKFKPNCVNVE---EVLPHWLSWLPLHEDKEEAVQTFSYLCDLIESNHPIVLGPNNTN-------LPKIFSIIA 220          
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: H3B691_LATCH (Importin N-terminal domain-containing protein n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3B691_LATCH)

HSP 1 Score: 64.7 bits (156), Expect = 5.740e-8
Identity = 59/223 (26.46%), Postives = 100/223 (44.84%), Query Frame = -1
Query:  136 KEAFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFHAAAVVPKLVTAIAGMMEYQS 804
            KE  LP FE ++ PL++ L+ P      P   R +GLC+  DV+EHC        +    L  +LQ    + P     RQA AYG+GV A+ GG+++     EA+ LL+ +++       ++ +        +N +SA  +++ HRP  V       V+   L  LP+  D  E       + DL  + + +  G            +P++   IA  + Y++
Sbjct:  851 KEKVLPWFEQLL-PLIVNLICPHR----PWPDRQWGLCIFDDVIEHCSPSSFK--YAEYFLRPMLQSVCDNSP---EVRQAAAYGIGVMAQFGGENYRQFCTEAIPLLVGVIQAAESKAKENIN------ATENCISAVGKIMKHRPECVNVN---EVLPHWLSWLPVQEDREEAVHTFSYLCDLIESNNPIVLGPNNSN-------LPRIFCIIADGIVYEA 1047          
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Match: U9U8L3_RHIID (Uncharacterized protein (Fragment) n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9U8L3_RHIID)

HSP 1 Score: 63.5 bits (153), Expect = 9.930e-8
Identity = 60/224 (26.79%), Postives = 103/224 (45.98%), Query Frame = -1
Query:  166 AFLPAFEAVMRPLVLQLLDPAAGAAVPPSHRSFGLCMAIDVLEHCGEGGRN--SVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRRDTGGDNDDDDGWGEGA-VRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHGRVVDLAFARHELFFGGGGDGTFH----------AAAVVPKLVT 798
            ++LP+F+ ++  + L L D        P+ R + LC+  D++E  G    N  + F   ++ +LL         A+  RQA AYG+GV A+ GG+++    A AL  L  ++       N +D    E     +NA+SA  ++L             AV+   L+SLPI  D  E  + +  ++DL  ++H    G   +  FH          A+A++P+ V+
Sbjct:  215 SYLPSFDKLLPIVTLFLAD------ANPAARQWALCVLDDIVEFTGPASWNYHTHFLEKMIASLLD-------IASDVRQAAAYGIGVCAQFGGENYADAVAAALTPLFQVI-------NSEDSRKEENVYATENAISAITKILKFNNSKFDVN---AVIPIWLNSLPIRYDEVEAALTYTYLLDLLESQHPAILGNNNE-NFHNIILIFIDVLASAILPEAVS 414          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6842.17801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE6_9PHAE3.750e-17992.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNE2_ECTSI6.540e-17694.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LD05_ECTSI2.990e-7850.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B4GFA9_DROPE5.650e-1330.09GL21654 n=5 Tax=obscura group TaxID=32355 RepID=B4... [more]
UPI0018644CE21.690e-929.26importin-5-like n=1 Tax=Megalops cyprinoides TaxID... [more]
A0A397W0E3_9GLOM3.030e-926.36Armadillo-type protein n=3 Tax=Gigaspora TaxID=487... [more]
A0A7C8I7G3_9PLEO1.770e-827.43Armadillo-type protein n=1 Tax=Massariosphaeria ph... [more]
UPI00145543731.960e-828.70importin-5 n=1 Tax=Fukomys damarensis TaxID=885580... [more]
H3B691_LATCH5.740e-826.46Importin N-terminal domain-containing protein n=2 ... [more]
U9U8L3_RHIID9.930e-826.79Uncharacterized protein (Fragment) n=2 Tax=Rhizoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6842contigEcto-sp13_S_contig6842:7072..7935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size866
Hectar predicted targeting categoryother localisation
Exons1
Cds size825
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463940.5432882-CDS-Ecto-sp13_S_contig6842:7071..78961681463940.5432882-CDS-Ecto-sp13_S_contig6842:7071..7896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6842 7072..7896 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463940.5526338-UTR-Ecto-sp13_S_contig6842:7896..79351681463940.5526338-UTR-Ecto-sp13_S_contig6842:7896..7935Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6842 7897..7935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6842.17801.1prot_Ecto-sp13_S_contig6842.17801.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6842 7072..7896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6842.17801.1

>prot_Ecto-sp13_S_contig6842.17801.1 ID=prot_Ecto-sp13_S_contig6842.17801.1|Name=mRNA_Ecto-sp13_S_contig6842.17801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
PLELPWKRHLHHRHDLLRLLPRLPVDELPLPQLFLVAVAVPAIPPRLVLH
HPRDGRDELGDNSRGMEGPIPATAEEQLVAGEGEVDDPPVAHLSLSHVHR
YRQRVQEGPHHGGGERCEYRTGAVDQHSERGRHRVVPYRALSPTVIVVVV
AAGVPPDEREEKPQSLRAVGVEVLPPELRGHTQAVRAGLPSRRRRRVVPA
GPLQEGRQEGRLENRVPPPLPAVLKDVDRHAEPEGAVRRRHGGAGGGVQE
LQDERPHDRLEGRQEGFLSALFFF*
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mRNA from alignment at Ecto-sp13_S_contig6842:7072..7935+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6842.17801.1 ID=mRNA_Ecto-sp13_S_contig6842.17801.1|Name=mRNA_Ecto-sp13_S_contig6842.17801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6842:7072..7935+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCTGGAACTCCCCTGGAAACGCCACCTTCACCACCGCCACGACCTCCT CCGCCTTCTCCCTCGTCTCCCGGTCGACGAGCTGCCGCTCCCACAGCTCT TCCTGGTTGCCGTAGCCGTCCCCGCCATCCCCCCGAGACTGGTACTCCAT CATCCCCGCGATGGCCGTGACGAGCTTGGGGACAACAGCCGCGGCATGGA AGGTCCCATCCCCGCCACCGCCGAAGAACAGCTCGTGGCGGGCGAAGGCG AGGTCGACGACCCTCCCGTGGCACACCTGTCCCTCAGCCACGTCCACCGT TATCGGCAGCGAGTCCAGGAGGGACCCCACCACGGCGGGGGGGAACGCTG CGAATACCGGACCGGGGCGGTGGATCAACACTCGGAACGCGGCAGACACC GCGTTGTCCCTTACCGCGCCCTCTCCCCAACCGTCATCGTCGTCGTTGTC GCCGCCGGTGTCCCTCCGGACGAGCGCGAGGAGAAGCCCCAGAGCCTCCG CGCTGTGGGCGTCGAAGTCCTGCCCCCCGAGCTCCGCGGCCACACCCAAG CCGTACGCGCAGGCCTGCCTAGTCGACGCCGCCGCCGGGTCGTCCCCGCG GGCCCCCTGCAGGAGGGCCGGCAGGAGGGGCGCCTGGAAAACCGAGTTCC GCCCCCCCTCCCCGCAGTGCTCAAGGACGTCGATCGCCATGCAGAGCCCG AAGGAGCGGTGCGACGGAGGCACGGCGGCGCCGGCGGCGGGGTCCAGGAG CTGCAGGACGAGCGGCCTCATGACCGCCTCGAAGGCCGGCAGGAAGGCTT CCTTTCGGCCCTTTTTTTTTTTTAATGATACGGCGACCACCGAGACGAGG AGCTCCTCCTCTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6842:7072..7935+

>mRNA_Ecto-sp13_S_contig6842.17801.1 ID=mRNA_Ecto-sp13_S_contig6842.17801.1|Name=mRNA_Ecto-sp13_S_contig6842.17801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6842:7072..7935+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCTGGAACTCCCCTGGAAACGCCACCTTCACCACCGCCACGACCTCCT
CCGCCTTCTCCCTCGTCTCCCGGTCGACGAGCTGCCGCTCCCACAGCTCT
TCCTGGTTGCCGTAGCCGTCCCCGCCATCCCCCCGAGACTGGTACTCCAT
CATCCCCGCGATGGCCGTGACGAGCTTGGGGACAACAGCCGCGGCATGGA
AGGTCCCATCCCCGCCACCGCCGAAGAACAGCTCGTGGCGGGCGAAGGCG
AGGTCGACGACCCTCCCGTGGCACACCTGTCCCTCAGCCACGTCCACCGT
TATCGGCAGCGAGTCCAGGAGGGACCCCACCACGGCGGGGGGGAACGCTG
CGAATACCGGACCGGGGCGGTGGATCAACACTCGGAACGCGGCAGACACC
GCGTTGTCCCTTACCGCGCCCTCTCCCCAACCGTCATCGTCGTCGTTGTC
GCCGCCGGTGTCCCTCCGGACGAGCGCGAGGAGAAGCCCCAGAGCCTCCG
CGCTGTGGGCGTCGAAGTCCTGCCCCCCGAGCTCCGCGGCCACACCCAAG
CCGTACGCGCAGGCCTGCCTAGTCGACGCCGCCGCCGGGTCGTCCCCGCG
GGCCCCCTGCAGGAGGGCCGGCAGGAGGGGCGCCTGGAAAACCGAGTTCC
GCCCCCCCTCCCCGCAGTGCTCAAGGACGTCGATCGCCATGCAGAGCCCG
AAGGAGCGGTGCGACGGAGGCACGGCGGCGCCGGCGGCGGGGTCCAGGAG
CTGCAGGACGAGCGGCCTCATGACCGCCTCGAAGGCCGGCAGGAAGGCTT
CCTTTCGGCCCTTTTTTTTTTTTAA
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