mRNA_Ecto-sp13_S_contig10150.178.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10150.178.1
Unique NamemRNA_Ecto-sp13_S_contig10150.178.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: D7FQR5_ECTSI (FAD binding / catalytic/ tRNA dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR5_ECTSI)

HSP 1 Score: 504 bits (1298), Expect = 4.100e-177
Identity = 244/254 (96.06%), Postives = 250/254 (98.43%), Query Frame = 1
Query:    1 QVFSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFGAK 762
            +VFSLAPMMEYTDRHMRYL+RLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLA FVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDF+YRLVKDFP+VDFTLNGGVNTYEE  A+SCLEQGAHGVMVGRSWSSNPWYWS+ADS LFGAK
Sbjct:   80 EVFSLAPMMEYTDRHMRYLLRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLAAFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFVYRLVKDFPDVDFTLNGGVNTYEE--AVSCLEQGAHGVMVGRSWSSNPWYWSQADSMLFGAK 331          
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A836CCW1_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCW1_9STRA)

HSP 1 Score: 349 bits (895), Expect = 2.210e-117
Identity = 168/253 (66.40%), Postives = 200/253 (79.05%), Query Frame = 1
Query:    1 QVFSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFGA 759
            Q  SLAPMMEYTDRHMRY++RL T + V+WTEM+P  +I+HN DDL R L Y++  EHPVVLQ+GGSD   VR AC LARPY+YD INLN GCPSE+VAGKGAFGAALMR P LV D+C AM++G+G     +VKCRIGVD++DSY  LA FV+ V+RG GV  FIVHARKAIL GLSP QNR +PPLKYD++YRLV+DFPE+ FTLNGGV TY  V     L+ GAHGVMVGR+    PWYWS++DS++FGA
Sbjct:    8 QRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGG-AQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQ--EALDGGAHGVMVGRAVLERPWYWSQSDSRVFGA 257          
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A4D9D156_9STRA (tRNA-dihydrouridine synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D156_9STRA)

HSP 1 Score: 327 bits (838), Expect = 1.150e-108
Identity = 156/250 (62.40%), Postives = 196/250 (78.40%), Query Frame = 1
Query:   10 SLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFGA 759
            SLAPMMEYTDRH+R+L+RLL+ R VL+TEM+ + T+ HN +   RFL +N   EHPVVLQ+GGSD   + EA RLA PYKY+A+NLNCGCPSE+V+GKG FGAALMR P  V +LC AM +G+    P+TVKCRIGVD+DDSYEQLA FVE VS  + V HF+VHARKAILGGLSP QNR +PPLKY F+YRL ++FP + FTLNGGV +YE+V+    L +G HGVM+GR+  + P+YWS  D+++FG+
Sbjct:   26 SLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPGQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSRGKIPVTVKCRIGVDDDDSYEQLAHFVETVSGASPVRHFLVHARKAILGGLSPDQNRRVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEH--LREGVHGVMIGRAVVARPFYWSDVDARVFGS 273          
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A7S3USD9_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USD9_HETAK)

HSP 1 Score: 322 bits (825), Expect = 5.750e-106
Identity = 158/254 (62.20%), Postives = 198/254 (77.95%), Query Frame = 1
Query:    1 QVFSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPD-DLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFGA 759
            ++FSLAPMM+YTDRHMR+L+RLL+   VL+TEM+ S TI++NP+ +LGR+LDY+E  EHPVVLQ+GGSD  ++R A   A PY+YDA+NLNCGCPSEKVAGKG FGAALMR   LV DLC  M   A  D P+TVK RIGVD++DSYE L  F+E V+  + V HFIVHAR AILGGLSPAQNR IPPLKYD++Y LVKD+PE  FT+NGG+  YEE+     L +G HGVMVGR+ +++P+ WS+ D  ++GA
Sbjct:   50 ELFSLAPMMDYTDRHMRFLMRLLSKDMVLYTEMIASGTIVNNPENELGRWLDYSESCEHPVVLQLGGSDPGELRRAAARAAPYRYDAVNLNCGCPSEKVAGKGCFGAALMREAELVGDLCRGM--AAELDCPVTVKSRIGVDDEDSYEGLCNFIETVADRSPVRHFIVHARTAILGGLSPAQNRQIPPLKYDYVYNLVKDYPEFQFTINGGITEYEEIREH--LGRGVHGVMVGRAINADPYKWSQVDELVYGA 299          
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A7S2C7I3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C7I3_9STRA)

HSP 1 Score: 310 bits (795), Expect = 2.230e-101
Identity = 154/250 (61.60%), Postives = 191/250 (76.40%), Query Frame = 1
Query:    7 FSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFG 756
            FS+APMM+YTDRH RYL+RLL+++ VL+TEMV +ST++HNPD + R+L  +++VE+PVVLQ+GGSD  D+R + + A  Y YD INLNCGCPS+KVAGKG+FGA LM     V  LC AM    G+  PITVKCRIGVD+ DSYEQLA FV  VS+  GV HFIVHARKAILGGLSP +NR IPP+KYD +Y+LV DFP + F++NG V TYE+VS    L +G HGVMVGRS    PW WS  DS+++G
Sbjct:   76 FSVAPMMDYTDRHFRYLLRLLSSKAVLYTEMVGASTLVHNPD-IDRWLRLSDDVENPVVLQLGGSDCEDLRTSVKRASAYNYDEINLNCGCPSDKVAGKGSFGATLMLDAKRVGQLCDAMAQECGK--PITVKCRIGVDDQDSYEQLAEFVGTVSQTGGVEHFIVHARKAILGGLSPEENRRIPPIKYDHVYQLVADFPSLRFSMNGEVKTYEDVSEH--LSRGLHGVMVGRSVIEQPWLWSEVDSRIYG 320          
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A453BR81_AEGTS (tRNA-dihydrouridine synthase n=13 Tax=Triticinae TaxID=1648030 RepID=A0A453BR81_AEGTS)

HSP 1 Score: 271 bits (693), Expect = 1.700e-87
Identity = 139/252 (55.16%), Postives = 179/252 (71.03%), Query Frame = 1
Query:    4 VFSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYW-SRADSKLFG 756
            +FS+APMM++TD H R L RL++    L+TEMV + TI+H  D L RFL +  E +HP+VLQIGGS+  ++ +A  LA  Y YD INLNCGCPS KVAG G FGA LM  P  V D   A+   A  D P++VKCRIGVD+ DSYE+L TFV++V   +   HFI+HARKA+L GLSPA+NR +PPLKY++ Y L++DFPEV FTLNGG+ T E+VSA   + QGAH VMVGR+  +NPW      DS+++G
Sbjct:   59 LFSVAPMMDWTDNHYRTLARLISRHAWLYTEMVVAETIVHQKDKLDRFLAFPAE-QHPIVLQIGGSNLDNLAKATELASGYAYDEINLNCGCPSGKVAGHGCFGARLMYDPEFVGDAMSAI--AANCDVPVSVKCRIGVDDRDSYEELCTFVDKVVSKSPTRHFIIHARKALLSGLSPAENRKVPPLKYEYYYALLRDFPEVHFTLNGGLTTIEQVSAS--IRQGAHQVMVGRAAYNNPWNMLGHVDSEIYG 305          
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A7S0D9F4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D9F4_9EUKA)

HSP 1 Score: 273 bits (697), Expect = 1.710e-86
Identity = 136/254 (53.54%), Postives = 173/254 (68.11%), Query Frame = 1
Query:    7 FSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAM-KDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILG-GLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFGAK 762
            FS+APMM+YTDRH R+L+R++T +  L+TEM+ S  +IH   D  R L Y++ +EHPV LQ+GGSD   + +  + A PY YDAINLNCGCPS+KV+G+G+FGAALM+ P     LC +M +  A  DTP++VKCRIGVD +D Y  L  FV  +    GV HFI+HARKAIL   LSP QNR IPPLKY +++RLV DFP   F LNGGV + EE      L+ G  GVMVGR   + PWYW   D +LFG +
Sbjct:  106 FSVAPMMDYTDRHFRFLLRMITKKAWLYTEMITSEALIHG--DADRLLRYHDPIEHPVALQLGGSDPDSLAKGVKKALPYAYDAINLNCGCPSDKVSGRGSFGAALMKEPDYTAVLCESMIQQAAATDTPVSVKCRIGVDENDDYHYLKQFVTALG-DVGVRHFIIHARKAILNMNLSPKQNREIPPLKYQYVHRLVVDFPSYSFVLNGGVKSLEEADEF--LKAGVAGVMVGREIINRPWYWGDVDRRLFGVE 354          
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: K3Y7H3_SETIT (Dus domain-containing protein n=6 Tax=Paniceae TaxID=147428 RepID=K3Y7H3_SETIT)

HSP 1 Score: 271 bits (694), Expect = 3.840e-86
Identity = 137/252 (54.37%), Postives = 180/252 (71.43%), Query Frame = 1
Query:    4 VFSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYW-SRADSKLFG 756
            +FS+APMM++TD H R L RL++    L+TEMV + TI+H  D+L RFL + EE +HP+VLQIGGS+  ++ +A  LA  Y YD INLNCGCPS KVAG G FGA LM  P  V D   A+   A  D P++VKCRIGVD+ DSYE+L  FV++V   +   HFI+HARKA+L G+SPA+NR +PPLKY++ + L++DFPEV FTLNGG+ T ++VSA   + QGA GVMVGRS  +NPW      DS+++G
Sbjct:   57 LFSVAPMMDWTDNHYRTLARLISRHAWLYTEMVVAETIVHQKDNLDRFLAFPEE-QHPIVLQIGGSNLKNLAKATELANAYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAI--AANCDVPVSVKCRIGVDDCDSYEELCDFVDKVVSNSPTRHFIIHARKALLSGISPAENRKVPPLKYEYYFALLRDFPEVKFTLNGGITTIDQVSAS--IRQGAQGVMVGRSAYNNPWNMLGHVDSEIYG 303          
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A5N5EV39_9ROSA (tRNA-dihydrouridine synthase n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5EV39_9ROSA)

HSP 1 Score: 270 bits (689), Expect = 4.160e-86
Identity = 131/252 (51.98%), Postives = 181/252 (71.83%), Query Frame = 1
Query:    7 FSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYW-SRADSKLFGA 759
            FS+APMME+TD H R L RL++    L+TEM+ + TI++  D+L RFL+Y+ E +HP+VLQIGG++  ++ +A  LA PYKYD IN NCGCPS +VAG G FGA+LM  P  V +    +   A  D P++VKCRIGVDN DSY +L  F+ +VS  +   HFI+H+RKA+L G+SPA+NR+IPPLKY++ Y L++DFP++ FT+NGG+NT EEV+A      GAHGVMVGR+  + PW+     D+ ++GA
Sbjct:   19 FSIAPMMEWTDNHYRTLARLISKNAWLYTEMLAAETIVYQKDNLDRFLEYSPE-QHPIVLQIGGNNLENLAKATELANPYKYDEINFNCGCPSPRVAGHGCFGASLMLDPKFVAEAMSVI--AAHTDAPVSVKCRIGVDNHDSYNELCDFIYKVSSQSPTRHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLRFTINGGINTVEEVNAAR--RAGAHGVMVGRAAFNKPWHTLGHVDTVVYGA 265          
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A446L0T7_TRITD (tRNA-dihydrouridine synthase n=13 Tax=Triticeae TaxID=147389 RepID=A0A446L0T7_TRITD)

HSP 1 Score: 269 bits (688), Expect = 4.210e-86
Identity = 138/252 (54.76%), Postives = 179/252 (71.03%), Query Frame = 1
Query:    4 VFSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYW-SRADSKLFG 756
            +FS+APMM++TD H R L RL++    L+TEM+ + TI+H  D L RFL +  E +HP+VLQIGGS+  ++ +A  LA  Y YD INLNCGCPS KVAG G FGA LM  P  V D   A+   A  D P++VKCRIGVD+ DSYE+L TFV++V   +   HFI+HARKA+L GLSPA+NR +PPLKY++ Y L++DFPEV FTLNGG+ T E+VSA   + QGAH VMVGR+  +NPW      DS+++G
Sbjct:   55 LFSVAPMMDWTDNHYRTLARLISRHAWLYTEMLVAETIVHQKDKLDRFLAFPAE-QHPIVLQIGGSNLDNLAKATELASGYAYDEINLNCGCPSGKVAGHGCFGARLMYDPEFVGDAMSAI--AANCDVPVSVKCRIGVDDRDSYEELCTFVDKVVSKSPTRHFIIHARKALLSGLSPAENRKVPPLKYEYYYALLRDFPEVHFTLNGGLMTIEQVSAS--IRQGAHQVMVGRAAYNNPWNMLGHVDSEIYG 301          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQR5_ECTSI4.100e-17796.06FAD binding / catalytic/ tRNA dihydrouridine synth... [more]
A0A836CCW1_9STRA2.210e-11766.40tRNA-dihydrouridine synthase n=1 Tax=Tribonema min... [more]
A0A4D9D156_9STRA1.150e-10862.40tRNA-dihydrouridine synthase n=3 Tax=Monodopsidace... [more]
A0A7S3USD9_HETAK5.750e-10662.20Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S2C7I3_9STRA2.230e-10161.60Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A453BR81_AEGTS1.700e-8755.16tRNA-dihydrouridine synthase n=13 Tax=Triticinae T... [more]
A0A7S0D9F4_9EUKA1.710e-8653.54Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
K3Y7H3_SETIT3.840e-8654.37Dus domain-containing protein n=6 Tax=Paniceae Tax... [more]
A0A5N5EV39_9ROSA4.160e-8651.98tRNA-dihydrouridine synthase n=1 Tax=Pyrus ussurie... [more]
A0A446L0T7_TRITD4.210e-8654.76tRNA-dihydrouridine synthase n=13 Tax=Triticeae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10150contigEcto-sp13_S_contig10150:3220..5420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score492.3
Seed ortholog evalue1.3e-136
Seed eggNOG ortholog2880.D7FQR5
Model size762
KEGG koko:K05539,ko:K05542
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.tRNA dihydrouridine synthase activity
EggNOG OGsCOG0042@1,KOG2335@2759
EC1.3.1.88
Cds size741
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462511.056165-UTR-Ecto-sp13_S_contig10150:3219..32401681462511.056165-UTR-Ecto-sp13_S_contig10150:3219..3240Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10150 3220..3240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462511.0680673-CDS-Ecto-sp13_S_contig10150:3240..34081681462511.0680673-CDS-Ecto-sp13_S_contig10150:3240..3408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10150 3241..3408 +
1681462511.0776596-CDS-Ecto-sp13_S_contig10150:3945..42211681462511.0776596-CDS-Ecto-sp13_S_contig10150:3945..4221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10150 3946..4221 +
1681462511.0873098-CDS-Ecto-sp13_S_contig10150:4751..49401681462511.0873098-CDS-Ecto-sp13_S_contig10150:4751..4940Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10150 4752..4940 +
1681462511.098147-CDS-Ecto-sp13_S_contig10150:5312..54201681462511.098147-CDS-Ecto-sp13_S_contig10150:5312..5420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10150 5313..5420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10150.178.1prot_Ecto-sp13_S_contig10150.178.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10150 3241..5420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10150.178.1

>prot_Ecto-sp13_S_contig10150.178.1 ID=prot_Ecto-sp13_S_contig10150.178.1|Name=mRNA_Ecto-sp13_S_contig10150.178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp
MMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVE
HPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAA
LMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVS
RGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTL
NGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFGAK
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mRNA from alignment at Ecto-sp13_S_contig10150:3220..5420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10150.178.1 ID=mRNA_Ecto-sp13_S_contig10150.178.1|Name=mRNA_Ecto-sp13_S_contig10150.178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10150:3220..5420+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTTCTCTCTCGCTCCGATGATGGAGTACACAGACCGGCACATGCG CTACCTTGTGCGGTTGCTCACAACTCGTACGGTGCTTTGGACGGAGATGG TACCGTCATCGACAATCATTCACAACCCTGACGACCTCGGTCGATTTCTG GACTACAACGAGGAGGTCGAACACCCAGTCGTGTTACAGGTACCAGCGAC TTTTTTTTACCACACTCGGGAAGGGCACATCTATGTAGGTTCACAGCAAC TGCGACCCTGGTTTTAACGGTCGTTTCTGCTGCGTAGGTTTATTTGTGAC CGAGGGCGATTCGTCGTCCCATCAGTACGATTGGTATGATTACCCTTTTA CTGCTTCCAAGATGTTGTCAAGGAACTTGTATTGAAACCTCGCTTTTCGC GTGCTCTCCGGAAGCACATGGCAGATTGAGTCGAGAGTAGTTCATCGTGT TCTTTCTAGGGTCTGCTTTTCACTTGCTCCGCCATGAACAGGCAGTATTT CCATACGTGTGCTTGGCGTACGGTTCTCCGACGAATACTCCTCTCCTTTG TTGCCGCTGCTATGTTGCCGCTGCTGCTGTCACTCGCATTTGCGGTGTCT TGGCTTCTCAACTAACGGTGAACGACGACTCTCTCTCTCTTTCGCTCTCT CCCTCTCTTTTTCTCTGTCTCTCTCTCTCCATGCAAAACTCTTTAATGGT TATCGGCGTCGTTCTGTCGGCCGCAGATCGGCGGGTCAGACACCACCGAC GTTCGAGAAGCCTGCCGCCTGGCTCGCCCGTACAAGTACGACGCCATCAA CCTAAACTGCGGGTGCCCCAGCGAGAAGGTCGCCGGCAAGGGGGCCTTCG GAGCGGCGCTGATGCGGTCGCCCTCTCTTGTGAAGGACCTGTGCCTGGCG ATGAAGGACGGGGCAGGGGAGGACACGCCGATAACGGTCAAGTGCCGTAT CGGCGTGGACAACGATGACTCATACGAGCAGCTTGCCACGTTCGTGGAAG AGGTGGGGTTCGGTCCCCCTTGCTGTAGTCCACGCGCGGAAAGTTTTTAC GTTGGAACCGCGTGTCAAGTCGGTGAGAGGGGGTTGTTCACGCCGCTGCT GAGCCGCGAAAGGCGGTGCTGCGGTCAATGCGTTTAGCTACCTTTAATAG TCTCGTCCTGTTTTCCATTTTTTTTTGCTCTGTCGCCGCATCTGCGCGCT CGTGTTTCACACCCACGTACGTCGGAGCTGTCTGCAGCAGTGTAGTACAT TGGCCAGAGGCAAGGATCGTTCTATTCGGTTAGGCCCGTTTGTGCAAAAA GCTTCCTGCGCGGCACCGCTGTCATTGACGGTTTTTTTTGTCTTGTTTTT CTTTCTGTCATCGACGTAAATGATTGGCTTTCTGCCGCCATACGCCTGCT GCTAAGGTGCTCTCACACTCCCTGACTCACTCTCTAACTATGCAAGTGGC TTCAGCTTAACTATCTCGATACATCGCCTTAATTGTCTGCGCCGTTGCTT GGCTTATAACACGGCGGTGGGCTTGGCATCAGGTGAGCCGCGGGGCAGGG GTTCCGCACTTTATCGTCCACGCCCGCAAGGCCATCCTCGGCGGGCTCAG TCCGGCACAGAACAGGAATATACCGCCCCTGAAGTACGATTTCATATACA GACTCGTCAAGGACTTTCCGGAGGTCGATTTCACGCTGAACGGGGGAGTC AACACGTACGAAGAGGTAAGTGTTGTTTTGAGCCTGTAGTACATCTCCGT GCGCGACCACCGTACTACCGTGCCCCAAAGCCAAGTATCCTGACATCGGG GTTACTGCGCTGAAGGTGCCATGCGCCGGGAGGGCGTGTCGCTGTCGCAC ACAGTGGGTGAGATCAACGACGGGAGTGCTGAACTACAATAACAGGTTCA CCATGTCCGCTTCGGCTATCGAAATGCCACCCTCTCAACTCACTGCTCGA GGACTGTACTGAAGCAGTGCTTGTCATGGGTTTTTTGTCTACGGCATTCA TACTCACGAAATACTTGGAGCTGGGCGGATCGCTCTCCAAAACTGCAGAC TTAACCCTGCCCCCAACGCCCCCACACACCTTCTTCCCGCAAGGCGCTCT CCTGCCTGGAGCAAGGCGCTCACGGGGTGATGGTGGGGAGATCCTGGAGC AGCAATCCATGGTATTGGAGCCGAGCCGATTCTAAGTTGTTCGGGGCGAA G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10150:3220..5420+

>mRNA_Ecto-sp13_S_contig10150.178.1 ID=mRNA_Ecto-sp13_S_contig10150.178.1|Name=mRNA_Ecto-sp13_S_contig10150.178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10150:3220..5420+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGAGTACACAGACCGGCACATGCGCTACCTTGTGCGGTTGCTCAC
AACTCGTACGGTGCTTTGGACGGAGATGGTACCGTCATCGACAATCATTC
ACAACCCTGACGACCTCGGTCGATTTCTGGACTACAACGAGGAGGTCGAA
CACCCAGTCGTGTTACAGATCGGCGGGTCAGACACCACCGACGTTCGAGA
AGCCTGCCGCCTGGCTCGCCCGTACAAGTACGACGCCATCAACCTAAACT
GCGGGTGCCCCAGCGAGAAGGTCGCCGGCAAGGGGGCCTTCGGAGCGGCG
CTGATGCGGTCGCCCTCTCTTGTGAAGGACCTGTGCCTGGCGATGAAGGA
CGGGGCAGGGGAGGACACGCCGATAACGGTCAAGTGCCGTATCGGCGTGG
ACAACGATGACTCATACGAGCAGCTTGCCACGTTCGTGGAAGAGGTGAGC
CGCGGGGCAGGGGTTCCGCACTTTATCGTCCACGCCCGCAAGGCCATCCT
CGGCGGGCTCAGTCCGGCACAGAACAGGAATATACCGCCCCTGAAGTACG
ATTTCATATACAGACTCGTCAAGGACTTTCCGGAGGTCGATTTCACGCTG
AACGGGGGAGTCAACACGTACGAAGAGGTAAGTGCGCTCTCCTGCCTGGA
GCAAGGCGCTCACGGGGTGATGGTGGGGAGATCCTGGAGCAGCAATCCAT
GGTATTGGAGCCGAGCCGATTCTAAGTTGTTCGGGGCGAAG
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