mRNA_Ecto-sp13_S_contig6841.17800.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 468 bits (1205), Expect = 5.010e-161 Identity = 234/253 (92.49%), Postives = 243/253 (96.05%), Query Frame = 2
Query: 35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTSSGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESSMSVRF 793
MARTAFAALAFGMLGA NALEVVSP+AGDMV++ SAYTVEWTG SGR+DIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPM+GTSSGYKVMVTDSSDESD GCSGDFTLIAST+APDATDMGAYV+VTSPS GDTAMAGGEYTVEFDYDNGLGSSV RFAIDLY SGGSGDCGTYVTTICDKPSIGCKDSQGDYDV+IPSGTESGMYSIRVG FEDDDV+GCSDSFEIVGGES MSVRF
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGES-MSVRF 252
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 390 bits (1002), Expect = 2.670e-130 Identity = 197/253 (77.87%), Postives = 210/253 (83.00%), Query Frame = 2
Query: 35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTSSGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESSMSVRF 793
MARTAFAALAFGMLGAVNALEV SP+AGDM+++ S+ TVEWTGT SGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPM+GTSSGYKVMVTDSSDESDMGCSG+FTL+AS FD+DNG GSSV RF+IDLYMSGGSGDCGTYVT+ICDK SIGCKDSQGDYDV+IPS TESGMYSIRVG FED DVFGCSDSFEI+GGESSMSVRF
Sbjct: 1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGESSMSVRF 253
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 389 bits (998), Expect = 1.110e-129 Identity = 194/253 (76.68%), Postives = 215/253 (84.98%), Query Frame = 2
Query: 35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTSSGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSG-GSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESSMSVR 790
MARTAFAALAFGMLGA NALEVVSP+AG V++ YTVEWTGT RF+IDLYYCGS CMEDECGDWVTALCPYG DGCPDTQGDYD+VMPEPM GTSSGYKV+VTDS+DES MGCSGDFTL+ASTDAP A ++G +TVTSPS GDTAMAGG YTVE+DY+NGLGSS RFAIDLY G G+GDCGTYV T+CDKPSIGC DSQGDYDV IPS T +GMYS+RVG F DD +F CS+ FEIV + MS+R
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSSGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSMR 253
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 370 bits (949), Expect = 2.750e-122 Identity = 182/254 (71.65%), Postives = 213/254 (83.86%), Query Frame = 2
Query: 35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTSSGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEI-VGGESSMSVRF 793
MARTAFAA+AFGML A NALEVVSP G VL+ AYTVEWTGT +GRF+IDLYYC S CM+D CGDWVTALCPYG DGCPD+ GDYD++MPEPM GTSSGYKVMV ++ DESDMGCS DFTLIAS DAP+A +MG +TVTSPS GDTAMAG YTVE+DY+NG GSS RFA+DLY+ GG+GDCGTYVTT+CD+PSIGC DSQGDYDV IPS T +GMYSIRVG F+D+ ++ CSD+FE+ + ++S+RF
Sbjct: 1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDDMTISMRF 254
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 362 bits (929), Expect = 3.270e-119 Identity = 184/257 (71.60%), Postives = 210/257 (81.71%), Query Frame = 2
Query: 35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSG-RFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTS-SGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGA-YVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGE-SSMSVRF 793
M RT F ALA GMLG +ALEVV+P+AGDMV+S AYTVEW+GTGS RF+IDLYYC S+CMEDECG+WVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D DE CS +F L+A DAP A+D G YVTVTSPS GD+A AG EYTVEFDYDNGLGSSVGRFAIDLY + GSGDCGT++ T+CDKP+IGCKDS GDYDV IP E+GMY+IRVG FED+ V+GCSD FEI+G + SSMS RF
Sbjct: 2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSMSYRF 258
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 347 bits (889), Expect = 3.220e-113 Identity = 176/256 (68.75%), Postives = 207/256 (80.86%), Query Frame = 2
Query: 35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTS-SGYKVMVTDSSDESDMGCSGDFTLIASTDAPDA-TDMGAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGES-SMSVRF 793
MART F ALA MLGA NALEVV+PSA +V++ YTVEWTG SGRF+IDLY+CGS+CMED CGDWVTALCPYG++GCPD +GDYD+VMPEPM G S SGYKV V D SDE M CS F L+AS DAPDA ++ G ++TVTSP+ GD+A AG EYTVEFDYDNG+GS V RF+IDLYM+ G GDCGTYVT+ICDKPSIGCKDS GDYDV IP+ TE+G Y IRVG FED++++GCS +F I+GG+ SMS F
Sbjct: 1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYDF 256
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 343 bits (880), Expect = 1.410e-111 Identity = 170/239 (71.13%), Postives = 198/239 (82.85%), Query Frame = 2
Query: 71 MLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSG-RFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTS-SGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGA-YVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESS 778
MLGA +ALEVV+P+ GD+V++ AYTVEWTGTGS R++IDLYYCGS+CMEDECGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D D+ CS +F L+A +AP A D G YVTVTSPS+GD+A AG EYTVEFDYDNGLGSSVGRFAIDLY + GSGDCGT++ T+CDKP+IGCKDS GDYDV IP E+GMY+IRVG FEDD V+GCSD FEI+G + S
Sbjct: 1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDS 239
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 321 bits (822), Expect = 5.530e-103 Identity = 165/251 (65.74%), Postives = 192/251 (76.49%), Query Frame = 2
Query: 35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGS-GRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTS-SGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDM-GAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESS 778
M RT F ALA GMLGA NAL+V +PS G V++ YTVEWTGT S RF+IDLYYCGS+CMED+CGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D DE D CS +F L+AS++AP D G + VTSP++GD A GEYTVEFDYDNG+GSSV RFAIDLY + G GDCGTYV +ICDKP+IGCKDS GDYDV IP T++G Y IRV FEDD ++ CS +F I G+ S
Sbjct: 1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDS 251
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: A0A6H5KR87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE) HSP 1 Score: 289 bits (739), Expect = 1.250e-91 Identity = 141/193 (73.06%), Postives = 164/193 (84.97%), Query Frame = 2
Query: 215 MEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTSSGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSG-GSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESSMSVR 790
MED+CGDWVTALCPYG DGCPDTQGDYD+VMPEPM+GTSSGYK+MVTDS+DES MGCSGDFTL+ASTDAP A ++G +TV SPS GD AMAG YTVE+DY+NGLGSS RFAIDLY G G+GDCGTYV T+CDKP+IGC DSQGDYDV IPS T +GMYS+RVG F D+ +F CS++FEIV + +S+R
Sbjct: 1 MEDDCGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSGYKIMVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVNSPSDGDIAMAGEVYTVEWDYNNGLGSSKDRFAIDLYTYGTGTGDCGTYVATLCDKPTIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDEIMFDCSEAFEIVNDSTDLSMR 193
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 279 bits (714), Expect = 3.630e-87 Identity = 149/232 (64.22%), Postives = 173/232 (74.57%), Query Frame = 2
Query: 35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGS-GRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTS-SGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDM-GAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDS----QGDYDVMIPSGTESGMYSIRV 709
MART F ALA GMLGA NAL+V +PS G V++ YTVEWTGT S RF+IDLYYCGS+CMED+CGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D DE D CS +F LIAS++AP D G + VTSP++GD A GEYTVEFDYDNG+GS V RFAIDLY + G GDCGTYV +ICDKP+IGCKDS +G + V G G +S+ V
Sbjct: 2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLV 233 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6841.17800.1 >prot_Ecto-sp13_S_contig6841.17800.1 ID=prot_Ecto-sp13_S_contig6841.17800.1|Name=mRNA_Ecto-sp13_S_contig6841.17800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSGRFDback to top mRNA from alignment at Ecto-sp13_S_contig6841:2..5545- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6841.17800.1 ID=mRNA_Ecto-sp13_S_contig6841.17800.1|Name=mRNA_Ecto-sp13_S_contig6841.17800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5544bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6841:2..5545- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6841:2..5545- >mRNA_Ecto-sp13_S_contig6841.17800.1 ID=mRNA_Ecto-sp13_S_contig6841.17800.1|Name=mRNA_Ecto-sp13_S_contig6841.17800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6841:2..5545- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |