mRNA_Ecto-sp13_S_contig6841.17800.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6841.17800.1
Unique NamemRNA_Ecto-sp13_S_contig6841.17800.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 468 bits (1205), Expect = 5.010e-161
Identity = 234/253 (92.49%), Postives = 243/253 (96.05%), Query Frame = 2
Query:   35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTSSGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESSMSVRF 793
            MARTAFAALAFGMLGA NALEVVSP+AGDMV++ SAYTVEWTG  SGR+DIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPM+GTSSGYKVMVTDSSDESD GCSGDFTLIAST+APDATDMGAYV+VTSPS GDTAMAGGEYTVEFDYDNGLGSSV RFAIDLY SGGSGDCGTYVTTICDKPSIGCKDSQGDYDV+IPSGTESGMYSIRVG FEDDDV+GCSDSFEIVGGES MSVRF
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGES-MSVRF 252          
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 390 bits (1002), Expect = 2.670e-130
Identity = 197/253 (77.87%), Postives = 210/253 (83.00%), Query Frame = 2
Query:   35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTSSGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESSMSVRF 793
            MARTAFAALAFGMLGAVNALEV SP+AGDM+++ S+ TVEWTGT SGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPM+GTSSGYKVMVTDSSDESDMGCSG+FTL+AS                                 FD+DNG GSSV RF+IDLYMSGGSGDCGTYVT+ICDK SIGCKDSQGDYDV+IPS TESGMYSIRVG FED DVFGCSDSFEI+GGESSMSVRF
Sbjct:    1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGESSMSVRF 253          
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 389 bits (998), Expect = 1.110e-129
Identity = 194/253 (76.68%), Postives = 215/253 (84.98%), Query Frame = 2
Query:   35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTSSGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSG-GSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESSMSVR 790
            MARTAFAALAFGMLGA NALEVVSP+AG  V++   YTVEWTGT   RF+IDLYYCGS CMEDECGDWVTALCPYG DGCPDTQGDYD+VMPEPM GTSSGYKV+VTDS+DES MGCSGDFTL+ASTDAP A ++G  +TVTSPS GDTAMAGG YTVE+DY+NGLGSS  RFAIDLY  G G+GDCGTYV T+CDKPSIGC DSQGDYDV IPS T +GMYS+RVG F DD +F CS+ FEIV   + MS+R
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSSGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSMR 253          
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 370 bits (949), Expect = 2.750e-122
Identity = 182/254 (71.65%), Postives = 213/254 (83.86%), Query Frame = 2
Query:   35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTSSGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEI-VGGESSMSVRF 793
            MARTAFAA+AFGML A NALEVVSP  G  VL+  AYTVEWTGT +GRF+IDLYYC S CM+D CGDWVTALCPYG DGCPD+ GDYD++MPEPM GTSSGYKVMV ++ DESDMGCS DFTLIAS DAP+A +MG  +TVTSPS GDTAMAG  YTVE+DY+NG GSS  RFA+DLY+ GG+GDCGTYVTT+CD+PSIGC DSQGDYDV IPS T +GMYSIRVG F+D+ ++ CSD+FE+    + ++S+RF
Sbjct:    1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDDMTISMRF 254          
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 3.270e-119
Identity = 184/257 (71.60%), Postives = 210/257 (81.71%), Query Frame = 2
Query:   35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSG-RFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTS-SGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGA-YVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGE-SSMSVRF 793
            M RT F ALA GMLG  +ALEVV+P+AGDMV+S  AYTVEW+GTGS  RF+IDLYYC S+CMEDECG+WVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D  DE    CS +F L+A  DAP A+D G  YVTVTSPS GD+A AG EYTVEFDYDNGLGSSVGRFAIDLY + GSGDCGT++ T+CDKP+IGCKDS GDYDV IP   E+GMY+IRVG FED+ V+GCSD FEI+G + SSMS RF
Sbjct:    2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSMSYRF 258          
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 347 bits (889), Expect = 3.220e-113
Identity = 176/256 (68.75%), Postives = 207/256 (80.86%), Query Frame = 2
Query:   35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTS-SGYKVMVTDSSDESDMGCSGDFTLIASTDAPDA-TDMGAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGES-SMSVRF 793
            MART F ALA  MLGA NALEVV+PSA  +V++   YTVEWTG  SGRF+IDLY+CGS+CMED CGDWVTALCPYG++GCPD +GDYD+VMPEPM G S SGYKV V D SDE  M CS  F L+AS DAPDA ++ G ++TVTSP+ GD+A AG EYTVEFDYDNG+GS V RF+IDLYM+ G GDCGTYVT+ICDKPSIGCKDS GDYDV IP+ TE+G Y IRVG FED++++GCS +F I+GG+  SMS  F
Sbjct:    1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYDF 256          
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 1.410e-111
Identity = 170/239 (71.13%), Postives = 198/239 (82.85%), Query Frame = 2
Query:   71 MLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSG-RFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTS-SGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGA-YVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESS 778
            MLGA +ALEVV+P+ GD+V++  AYTVEWTGTGS  R++IDLYYCGS+CMEDECGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D  D+    CS +F L+A  +AP A D G  YVTVTSPS+GD+A AG EYTVEFDYDNGLGSSVGRFAIDLY + GSGDCGT++ T+CDKP+IGCKDS GDYDV IP   E+GMY+IRVG FEDD V+GCSD FEI+G + S
Sbjct:    1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDS 239          
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 5.530e-103
Identity = 165/251 (65.74%), Postives = 192/251 (76.49%), Query Frame = 2
Query:   35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGS-GRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTS-SGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDM-GAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESS 778
            M RT F ALA GMLGA NAL+V +PS G  V++   YTVEWTGT S  RF+IDLYYCGS+CMED+CGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D  DE D  CS +F L+AS++AP   D  G  + VTSP++GD A   GEYTVEFDYDNG+GSSV RFAIDLY + G GDCGTYV +ICDKP+IGCKDS GDYDV IP  T++G Y IRV  FEDD ++ CS +F I  G+ S
Sbjct:    1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDS 251          
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: A0A6H5KR87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 1.250e-91
Identity = 141/193 (73.06%), Postives = 164/193 (84.97%), Query Frame = 2
Query:  215 MEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTSSGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSG-GSGDCGTYVTTICDKPSIGCKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESSMSVR 790
            MED+CGDWVTALCPYG DGCPDTQGDYD+VMPEPM+GTSSGYK+MVTDS+DES MGCSGDFTL+ASTDAP A ++G  +TV SPS GD AMAG  YTVE+DY+NGLGSS  RFAIDLY  G G+GDCGTYV T+CDKP+IGC DSQGDYDV IPS T +GMYS+RVG F D+ +F CS++FEIV   + +S+R
Sbjct:    1 MEDDCGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSGYKIMVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVNSPSDGDIAMAGEVYTVEWDYNNGLGSSKDRFAIDLYTYGTGTGDCGTYVATLCDKPTIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDEIMFDCSEAFEIVNDSTDLSMR 193          
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 3.630e-87
Identity = 149/232 (64.22%), Postives = 173/232 (74.57%), Query Frame = 2
Query:   35 MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGS-GRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTS-SGYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDM-GAYVTVTSPSAGDTAMAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIGCKDS----QGDYDVMIPSGTESGMYSIRV 709
            MART F ALA GMLGA NAL+V +PS G  V++   YTVEWTGT S  RF+IDLYYCGS+CMED+CGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D  DE D  CS +F LIAS++AP   D  G  + VTSP++GD A   GEYTVEFDYDNG+GS V RFAIDLY + G GDCGTYV +ICDKP+IGCKDS    +G + V    G   G +S+ V
Sbjct:    2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLV 233          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6841.17800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G3E8_ECTSI5.010e-16192.49Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KP11_9PHAE2.670e-13077.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F0_ECTSI1.110e-12976.68EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JY62_9PHAE2.750e-12271.65GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
A0A6H5JFT9_9PHAE3.270e-11971.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI3.220e-11368.75EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D8LI46_ECTSI1.410e-11171.13EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JRG9_9PHAE5.530e-10365.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR87_9PHAE1.250e-9173.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH21_ECTSI3.630e-8764.22Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6841contigEcto-sp13_S_contig6841:2..5545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1747
Hectar predicted targeting categorysignal peptide
Exons6
Ec32 ortholog descriptionSecreted protein similar to EsV-1-163
Ec32 orthologEc-00_006570.1
Cds size762
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6841.17800.1prot_Ecto-sp13_S_contig6841.17800.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6841 953..5511 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463940.4548125-UTR-Ecto-sp13_S_contig6841:1..9521681463940.4548125-UTR-Ecto-sp13_S_contig6841:1..952Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6841 2..952 -
1681463940.5182538-UTR-Ecto-sp13_S_contig6841:5511..55451681463940.5182538-UTR-Ecto-sp13_S_contig6841:5511..5545Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6841 5512..5545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463940.4648745-CDS-Ecto-sp13_S_contig6841:952..11011681463940.4648745-CDS-Ecto-sp13_S_contig6841:952..1101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6841 953..1101 -
1681463940.473765-CDS-Ecto-sp13_S_contig6841:1482..16181681463940.473765-CDS-Ecto-sp13_S_contig6841:1482..1618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6841 1483..1618 -
1681463940.4818861-CDS-Ecto-sp13_S_contig6841:2037..22051681463940.4818861-CDS-Ecto-sp13_S_contig6841:2037..2205Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6841 2038..2205 -
1681463940.4901814-CDS-Ecto-sp13_S_contig6841:2599..27221681463940.4901814-CDS-Ecto-sp13_S_contig6841:2599..2722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6841 2600..2722 -
1681463940.5018582-CDS-Ecto-sp13_S_contig6841:3173..32551681463940.5018582-CDS-Ecto-sp13_S_contig6841:3173..3255Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6841 3174..3255 -
1681463940.5100465-CDS-Ecto-sp13_S_contig6841:5407..55111681463940.5100465-CDS-Ecto-sp13_S_contig6841:5407..5511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6841 5408..5511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6841.17800.1

>prot_Ecto-sp13_S_contig6841.17800.1 ID=prot_Ecto-sp13_S_contig6841.17800.1|Name=mRNA_Ecto-sp13_S_contig6841.17800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
MARTAFAALAFGMLGAVNALEVVSPSAGDMVLSGSAYTVEWTGTGSGRFD
IDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMEGTSS
GYKVMVTDSSDESDMGCSGDFTLIASTDAPDATDMGAYVTVTSPSAGDTA
MAGGEYTVEFDYDNGLGSSVGRFAIDLYMSGGSGDCGTYVTTICDKPSIG
CKDSQGDYDVMIPSGTESGMYSIRVGAFEDDDVFGCSDSFEIVGGESSMS
VRF*
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mRNA from alignment at Ecto-sp13_S_contig6841:2..5545-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6841.17800.1 ID=mRNA_Ecto-sp13_S_contig6841.17800.1|Name=mRNA_Ecto-sp13_S_contig6841.17800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5544bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6841:2..5545- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCCTTTTTCTCAACCCCGCGAGAAAAGAAAGATGGCCCGCACTGCTT TCGCTGCTCTGGCCTTCGGCATGCTCGGTGCCGTCAACGCCCTGGAGGTC GTCTCGCCCTCCGCCGGGGACATGGTGCTCTCCGGCAGGTAAGCAAGGAG GGGAACAAAGTAGCAACTACCACAACACGAGAGAGAAACATACGCACAAC GAGAGCGTGGCGTCGCCTCATGTTAATACAGTCGCGGCAGCAGCAGCAGC AGCAGCAGTAGTAGCGGTTGTGAGAGGAGAGATCCGGGGTCAGTCCGTCC CTCTCGGGAGGTGTTTATTTCTTCCAATCTGTCGAACAACAAATAGGAAG AACAACAGATGTCACGTTTTTGTGAAATAGCGGAGATGGCTGCGCGATGA ACAGGAGCGAGAGCCATGTTTCCATGGCGCGCGCCAACGCCGTTGCAGAG GGTTCTCCGCCAGACGCGTCCACTGCTCACCCTCTCGTACAGCAGGCCCG ATTCTTCGAGCGGATGGGAAGTGCGCACCGTAGTCCTCCTTGAGGAAAAC TGATTTGTCCGGTGGGAAGCCGAAGGCGTATTGTATGTACTTGCACAGAA AACTATGTTGTTCCCTCAAAACCCAAATATTTTTTACGTAGTAATAAGGG ACTACAGCCGTGCTCAGGTCCACGCGATGTGTGTCTCAAAAGTCAGTAAA GCGACCAGGACAAGCGCGTCATGTTGGCCGCTTGTTCGCTCTGCCGGGTG TGTTCTCGGCAGACAACGGAGCGCGGACGGGCGCGTTCGTTCGGGCAGAA CCCTTCTCCCTGTTCTCCTTTTAGAAGAAAACACCCTAGGATTCGATTCG GACTGCCGTGTCGGGGTGGCCAGGAAATGATCTACTGATTCCTCCCTGGC CGCGTTCAATTGCACCTGTTGTGTAGATAGATAGCAACGGTCGGTGGAGA TATGGACGGGAGCTAACGAGATGCAAGTGGCGCACCATGTTTGCGCGCCC CACCGTACGACGTCTATGTAGTTGGCAGCACAGAGTACAAGCCCCCCCGC GAAATACAAATGATCACCAGCTGGCTGGCAAACGGCTCAACCAAACGGCA CACGCATCATCGAACCCGCGTTGATGTCGCACGCCCCCTCTCTCTGCCTA TTCGATGCCAATTTCAATCAAGCCGTGCGAGCGGTAGCGTGTGCACCCGT ACTGTACTGCTTGCTCTGAAGTCGCGCGGACTTGGTACATCATTCCTCTG CTAGCCGCCACTCACGGATCAACTCTCTTTCCACCGTTGTTTCTCACTTT TTTTTTGCGCAACGAGTTTTTTCTCTATCGATAGGTTAGGGTCCAGCATC AGACATTCAATTTCATATGCGCATGCGTGTGTGTATGCCTTACGAAAGCG AAGTACTGCTCATGTTTCTCTGTACGATACACCACTCGACCAGTAAACAG CGACAATCTCTTCTGGGTGACATGCGTATGGGCACGCTCTTTCTATAGAT CGCTTGTAAGGCAGATTGCGTTCGGCCCGAGACGAGCCTTCCCCGCCAAG TATCGCGGTTCCGCGCAGTCGAAATACGCAGGAGCAACGAACACTACTTG ACCGGAACTGCACTGAAGAACGATGAACGGGCATGTTTTTGGCCATGTCG CGCCGGACATGCGCATGTACTAGACTTATATACGACAAACACCCCATCGA CTTGCATGTTCACCCGTTCCTATTAAGTTCCTCATCAAAGATAAACGCAT GTACGAACTTAATGCTTGCTCGTACAACATTTTTATTGCGTCTCATTTGA CACGTGAGAGTTGAGAGAACAAATTGGGAGCAATATTGAACCCATCGCGT TTTGTTTCACATCCGAGCACGCACCTGTCATTGCCAAAGGATTTGGGAAT CAGATATGTTTCCCGGCGGTAGGAAACATACCGTTTAGGCTCCCAAATTT TGAAAGATGCCACCACAGAAGCATCTATGCATGGATGTCATCACAGCAGT GGGCCGGGGGGCAGGTTGAATGGTGCTGTGTCGTTTGGCTGGCAAAAGAC TGCACTACCAATCTACCCTAAAGTCTACAGTACTTCGTATGTTCTCGTGC TGTTTTTCGGAATACCTCCCCCACTCCTGATGTCCAGATCATGTTTGTTT CATTCAACGCGTGTAGCGTTCTTACGTAATCCGCCAGCCTGTGATCACAA GCGACCACACCGGGGTGCCTCCCAAATGTTTGGTCAACGCTGACCGTTTT GTGCGATGCCTTTCTTTTGTCTCGCGTGTTTTGTTGCCAGTGCATACACC GTTGAGTGGACCGGAACCGGCAGCGGGCGCTTCGACATCGATCTCTACTA CTGCGGCTCCGTGTGTATGGAAGTAAGGACACAGTTGTCGATAATCCACT TCTTACGTTTTTTCGTCCACGTGTTTATTGTCAGCAAATTCCTGCCTGAA AAAAACCAGGCACAAATAACCACCCTGGTGCGTCTTGCGTGGGTTGGGGT GGTACAGGCAAGAACCCTTGCTCACCTCAAATAATTTTGCATCTGAACAG GGTGTTTGTCGGTTGTTGCGTATACAAGAAAGAGTCAAGGCGGCAGGATG TGCCAGATTTGTCTGCAGCACCGTGCCCGATATGTTGACCTCTAAGAGCC TGCACATCCTGCGTGTCCCGTAAGATGTTTTGTCTTGTCTTTCTCCGAGT CAGGCCAGTAGTCCTGCCCTCCACTCGTTCTTGCCATGTCCAACCCCCTA CGAAGCACACCGCCCCCCACCCTTACCCCCACCCCCGCGTCACCAACGTC CGCTTTCCGCCCGTGTTTTGCAGGACGAGTGCGGTGACTGGGTGACGGCC CTTTGCCCCTACGGCGACGACGGTTGCCCCGACACCCAGGGTGACTACGA CGTCGTTATGCCGGAGCCCATGGAAGGTACCTCCAGCGGCTACAAGGTGC GCTGTGTGTATGCGTGCGCGTATGTCCGCTGTGGGGTGAACGGAAAGATC ACAGCAGTAGATGTATGACGGCATCGACTGAACTGTTCAGGGGACAACGA GCGCATCTACCATGTAGATGGCACAAGAGAAGCTTTCGATGGAAAGGTGG CACGGCGTGCGTGCGGCGCGACTGCAGACCAAAACGAATCTGGTTCGAAG AGCAGTTGCTTCTTTTTACCACGAGGAAACATGCTGGAAGACACTCCGAA CGCAAAGCAGGCGTGAAATTTGATCATTTTTTAGTTGTTGCGGGGCTGTT TTAGAAACCTGCTCGAAACCGAATGGTGACCCCTTAACCCAGAAATGGGG TTTGCTAAACAAGGTGTTGTTCCCTCCCCCAACCTCCCAGGTCATGGTCA CTGACTCCAGTGATGAGTCCGACATGGGCTGCTCTGGCGACTTCACCCTG ATCGCGTCCACAGATGCACCCGACGCGACCGACATGGGAGCCTACGTCAC CGTAACATCTCCCTCAGCCGGCGACACCGCGATGGCCGGCGGGGAGTACA CCGTGGAGGTGAGGTGCAGTCCGCTACTTGCACAAACTTTTTTTGTCTGT TGAAGGACACCTGACATGACGGGAAAGCTATGTAGTCCGCCCTTTGAAAA CGTTTTCACTCGAAAGAGGACATGTTCCAATTGGGAAGGTGTGGTGTTTG CGACGACGTTTTCTGTTTTTTGTGTTGGTGTTGTGTGCCTATGCGAGGGG GTGACGAAGGAGTCGATAGCACACTTTTCTGATTTTCTGATTTTCCGATT TTCATGTACGATATCATCTTCATGGATTGTATGAAATTTTTTCCGGCCCA CTCTTTGGTTTCGCGTCTAGAGGCGAGGAAGCACCGCCCGTTTCCCTTCA CTCTCTTTCGCTCATGCCCACACACAAACACCATTGCGCTCTCCGCCCTG CCCTGATGTCTTGCAACTCGAAAAAAGTTCGACTACGACAACGGCTTGGG CTCCTCCGTGGGCCGGTTCGCTATCGACCTCTACATGTCCGGCGGCTCCG GGGATTGCGGAACTTACGTTACCACCATCTGCGACAAGCCCAGCATCGGC TGCAAGGACTCGCGTACGTTCCCAGTAAAATTCTCGCGTTGCCTTGTGTA ATAAGTAGTTGTTTTGGTTTTAAGTAGGAAGGTGGTTCTAGTGTTGGGTC CCCACCTTAGTTCCCTCGTTCGCTGAGAAATGCTCACAACTTTGGTTGTC TCGTGTTGGTGTGAGCTGCATGTGTCCTTCGTATTTTCTAAGAGAGCAGG AACGATTTTGTCAAAGGGCAACGTAGATCCGTCCCCCCCGCCCCCCCCCC CCCCTCCCCTTCTACTGTGGAGTATCGTTTTGCAGCAGTCTTTGTGTCCG TTCTTGCCAAAAAAACTACCCAGACTCATCAACCTAACCCAACCCAACCC CTTCCGGCGCTGTTTTTTTTTCTCGTCTGGATTCTTGTGATCAGAGGGTG ACTATGACGTGATGATCCCCTCGGGCACCGAATCCGGGATGTACTCGATC CGAGTGGGCGCCTTCGAGGATGACGACGTGTTCGGCTGCTCTGACTCCTT CGAGATCGTCGGCGGCGAGTCCAGCATGAGCGTGCGCTTCTAAGAGAAAC GTCCTCTCTACGATCTATCTGATGGGTCTCCTTTGAAATTTAAGCTGGAA AGACTGATTGACTGACTGGCTTGTCCTGTATCGGTAGAAGATCTGAGAGT TTAGGCCTTTTTGGTGGACAACATGTTCTCGTGTAGTGTTCGTTTTGAGT CTAGTTGTCGGATTGAACCATCGATCAAGTGCGAGAAAGAATGGGTGGGG TAATGCCAAAGAGAAGATGTAGAAGCACGCGCGACCTCACGTGCAAATGC GCAATACAGACGTTGGGCGAGGTTCGGACAAGTTGGCGAAATGTACGTGT GCCCCGTTGACCTAGTTGCGTTGTAGTTTTTGGGGGTACTTCCCATACTT CGTCTCTTTTTCGTGCGTGTTCCTCTGGTATTAGCCTTGCCCCCCTCCCC TGCCACGGCTTGATCCTCTTGCTTGGCGTCGTGTTGATCGTGTCGGGGTA TCGTTTCTCCGCCACTGTGGGCACTGACGGTATGGAGAGGCAGGGGAGTG GGTGCATTTGCGCCGTAGTAGATCGGAATTCTCTCTGTTTTACCTTGACT TGATCTTGTCTCTTGGGACGAGAACGGTAATTTGGCGGACATGTGACGGT CAAAAAAAAAGTTAGAACGTTCTTGAATGAGTCGCCTTCATTCGCTTGGC GACAGAGGGAGTTTGGGCTTTCGCCCTCTCCCTTTCCAAAACTTAAATCA TCTGTAATACTACTGTGGCACGGCTTCAGGAGGTTTGGACAGCCGAACGT TTAGTTGTATTGGAGAGGCTTGTCTACGTGGGTATTTAGCTGCATAGCGC TCGCGCATCCCTCTTGCCACCACCCCACTGGCCCCTCTACTGGTTTTACG TGCTGTTTCCCTTCGAATTTATACAATATTTGTTTGGCCGGCTCCAATCT GCGAAGCGAAGCGACGTTTCGAGGGGAGCGTTTCGGCACGCATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6841:2..5545-

>mRNA_Ecto-sp13_S_contig6841.17800.1 ID=mRNA_Ecto-sp13_S_contig6841.17800.1|Name=mRNA_Ecto-sp13_S_contig6841.17800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6841:2..5545- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCGCACTGCTTTCGCTGCTCTGGCCTTCGGCATGCTCGGTGCCGT
CAACGCCCTGGAGGTCGTCTCGCCCTCCGCCGGGGACATGGTGCTCTCCG
GCAGTGCATACACCGTTGAGTGGACCGGAACCGGCAGCGGGCGCTTCGAC
ATCGATCTCTACTACTGCGGCTCCGTGTGTATGGAAGACGAGTGCGGTGA
CTGGGTGACGGCCCTTTGCCCCTACGGCGACGACGGTTGCCCCGACACCC
AGGGTGACTACGACGTCGTTATGCCGGAGCCCATGGAAGGTACCTCCAGC
GGCTACAAGGTCATGGTCACTGACTCCAGTGATGAGTCCGACATGGGCTG
CTCTGGCGACTTCACCCTGATCGCGTCCACAGATGCACCCGACGCGACCG
ACATGGGAGCCTACGTCACCGTAACATCTCCCTCAGCCGGCGACACCGCG
ATGGCCGGCGGGGAGTACACCGTGGAGTTCGACTACGACAACGGCTTGGG
CTCCTCCGTGGGCCGGTTCGCTATCGACCTCTACATGTCCGGCGGCTCCG
GGGATTGCGGAACTTACGTTACCACCATCTGCGACAAGCCCAGCATCGGC
TGCAAGGACTCGCAGGGTGACTATGACGTGATGATCCCCTCGGGCACCGA
ATCCGGGATGTACTCGATCCGAGTGGGCGCCTTCGAGGATGACGACGTGT
TCGGCTGCTCTGACTCCTTCGAGATCGTCGGCGGCGAGTCCAGCATGAGC
GTGCGCTTCTAA
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