mRNA_Ecto-sp13_S_contig6840.17798.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6840.17798.1
Unique NamemRNA_Ecto-sp13_S_contig6840.17798.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6840.17798.1 vs. uniprot
Match: A0A6H5K2I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2I3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.210e-27
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 MQEDHFNDKEGLIEYNVNCFKETLEEVFRPLPMPRPRRKGARSSAVGAPGSGRP 162
            MQ DHFNDKEGLIEYNVNCFKETLEEVFRPLPMPRPRRKGARSSA GAPGSGRP
Sbjct:  317 MQADHFNDKEGLIEYNVNCFKETLEEVFRPLPMPRPRRKGARSSAAGAPGSGRP 370
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BLAST of mRNA_Ecto-sp13_S_contig6840.17798.1 vs. uniprot
Match: D7FZ21_ECTSI (GTR2, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ21_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.660e-17
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 MQEDHFNDKEGLIEYNVNCFKETLEEVFRPLPMPRPRRK 117
            MQ DHFNDKEGLIEYNVNCFKETL EVFRPLPMPRPRRK
Sbjct:  274 MQADHFNDKEGLIEYNVNCFKETLGEVFRPLPMPRPRRK 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6840.17798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2I3_9PHAE2.210e-2796.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ21_ECTSI6.660e-1794.87GTR2, Ras superfamily GTPase n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6840contigEcto-sp13_S_contig6840:100..677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score82.0
Seed ortholog evalue9.4e-14
Seed eggNOG ortholog2880.D7FZ21
Preferred nameRRAGD
Model size165
KEGG koko:K16186
KEGG Pathwayko04140,ko04150,map04140,map04150
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000228,GO:0000287,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000785,GO:0000790,GO:0001101,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005764,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006396,GO:0006725,GO:0006807,GO:0006914,GO:0006915,GO:0006950,GO:0006995,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007264,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008340,GO:0008380,GO:0009056,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010008,GO:0010033,GO:0010243,GO:0010259,GO:0010467,GO:0010468,GO:0010506,GO:0010507,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0012501,GO:0012505,GO:0015630,GO:0016020,GO:0016021,GO:0016049,GO:0016070,GO:0016237,GO:0016241,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019003,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022402,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031090,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0032006,GO:0032007,GO:0032008,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034198,GO:0034448,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0036094,GO:0040007,GO:0042221,GO:0042594,GO:0043085,GO:0043087,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043200,GO:0043201,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043547,GO:0043562,GO:0044087,GO:0044088,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044430,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045786,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0046982,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051020,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051726,GO:0060255,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0072657,GO:0072665,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902115,GO:1902531,GO:1902532,GO:1902533,GO:1902680,GO:1903432,GO:1903506,GO:1903508,GO:1903778,GO:1904262,GO:1904263,GO:1990131,GO:1990253,GO:1990928,GO:2000112,GO:2000785,GO:2001141
Exons2
EggNOG free text desc.regulation of TORC1 signaling
EggNOG OGsKOG3887@1,KOG3887@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_001255.1
Cds size165
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463940.3102689-CDS-Ecto-sp13_S_contig6840:99..1471681463940.3102689-CDS-Ecto-sp13_S_contig6840:99..147Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6840 100..147 -
1681463940.3243349-CDS-Ecto-sp13_S_contig6840:560..6771681463940.3243349-CDS-Ecto-sp13_S_contig6840:560..677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6840 561..677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6840.17798.1prot_Ecto-sp13_S_contig6840.17798.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6840 100..677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6840.17798.1

>prot_Ecto-sp13_S_contig6840.17798.1 ID=prot_Ecto-sp13_S_contig6840.17798.1|Name=mRNA_Ecto-sp13_S_contig6840.17798.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MQEDHFNDKEGLIEYNVNCFKETLEEVFRPLPMPRPRRKGARSSAVGAPG
SGRP*
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mRNA from alignment at Ecto-sp13_S_contig6840:100..677-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6840.17798.1 ID=mRNA_Ecto-sp13_S_contig6840.17798.1|Name=mRNA_Ecto-sp13_S_contig6840.17798.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=578bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6840:100..677- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGAAGACCACTTCAACGATAAGGAGGGTCTCATCGAGTACAATGT
GAACTGCTTCAAGGAGACCTTGGAAGAGGTATTCCGACCTCTACCGATGC
CCAGGCCGCGAAGAAAGGTAATTCAGACGTTGTTGCCCGAACGAGATGTT
TCGCGTGCGTGAGACGAACAAGCCGTAGATGCTTGCGTGTCCGGACAGTT
CCAAGTTGGTGCGCGTTTTGTCTAGGCGCTTTGACTGGTACGCAGATGTA
GCGGCGTCGATGCTGCGGCATTGTCGTCGTCTGGGTGGTTGCTGTTGTTA
CACACGTCGTGGGGTTACTATTTTGACCTGACCTCCTGTTCCCAGTACCG
CCTCTCCCTCGCCCTGTTGTGGTAGTATGTCATGGGCCTCAGTGTCGCCC
TCTTGTGGTGTACCGGGCCTCTTGTGCTGCTGCTACTACTTTACGAAGTT
GCAGCCTCCACTTAGACTCCCCTCCGAATTGTTAACACGCCTTACGCCAT
GCCCCCGCCTACCACGTCTTTTGCGATCAGGGCGCGCGTTCATCAGCCGT
AGGGGCCCCGGGGTCAGGGCGACCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6840:100..677-

>mRNA_Ecto-sp13_S_contig6840.17798.1 ID=mRNA_Ecto-sp13_S_contig6840.17798.1|Name=mRNA_Ecto-sp13_S_contig6840.17798.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6840:100..677- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGAAGACCACTTCAACGATAAGGAGGGTCTCATCGAGTACAATGT
GAACTGCTTCAAGGAGACCTTGGAAGAGGTATTCCGACCTCTACCGATGC
CCAGGCCGCGAAGAAAGGGCGCGCGTTCATCAGCCGTAGGGGCCCCGGGG
TCAGGGCGACCATGA
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