mRNA_Ecto-sp13_S_contig6838.17793.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6838.17793.1
Unique NamemRNA_Ecto-sp13_S_contig6838.17793.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6838.17793.1 vs. uniprot
Match: D8LGF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF6_ECTSI)

HSP 1 Score: 577 bits (1486), Expect = 3.410e-201
Identity = 335/425 (78.82%), Postives = 345/425 (81.18%), Query Frame = 1 
Query:    1 KVLRGQELASAQSQGIADGLSETSTRIAGLSDSLSQELASAMREIEKQETLLASLLTRQDVAATQASSLSTELNNAKSDLASYMEAIEEDRRATKDQNHDLMETIGFIHDCLDNASSAWARFQAFTYLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRGGSDGLERVDWLVSGLKWASPGTFAAATWAKVFTQEKIRWLTFQAGAVILGHTLTSYYLPSLELGRLASSLLAAWKNSRNGDNSRNDDHRGTSRSRXXXXXXXXXRRTDGPQLLRLLPFGRGSGDHDDGTVARGGHGHSRNHAGESFHHDGNEDDDSTNDNGSVQDDNNDSGRLGAREPVTPGPERAANGSSFGGSRRASGQGSARADGLDGLKRQELQSLAKKTDGVVRANLSTPNIIRGLRELGITGDALDH 1275
            +VL+GQELASAQSQGIADGLSETSTR+AGLSDSLSQEL SAMREIEKQETLLASLLTRQDVAATQASSLSTELNNAKSDLASYMEAIEEDRR                                  YLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRGG DGLERVDWLVSGLKWASPGTFAAATWAKVFTQEKIRWLTFQAGAVIL HTLTSYYLPSLELGRLASSLLAAWKNSRNGD SRNDDHR                             GRG GD DDGT AR GH HSR+HAGESF HDGN+DD +TND+GSVQDDN++SGRLGAREPVTPGP RA NGSS GGSRRASGQG+ RADGLDGLKRQELQSLAKKTDGVVRANLST NIIRGLRELGIT DALDH
Sbjct:  211 QVLKGQELASAQSQGIADGLSETSTRLAGLSDSLSQELVSAMREIEKQETLLASLLTRQDVAATQASSLSTELNNAKSDLASYMEAIEEDRR----------------------------------YLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRGGLDGLERVDWLVSGLKWASPGTFAAATWAKVFTQEKIRWLTFQAGAVILSHTLTSYYLPSLELGRLASSLLAAWKNSRNGD-SRNDDHR----------------------------VGRGRGDRDDGTAARSGHDHSRHHAGESFQHDGNQDD-TTNDDGSVQDDNSNSGRLGAREPVTPGPGRAGNGSSNGGSRRASGQGNTRADGLDGLKRQELQSLAKKTDGVVRANLSTLNIIRGLRELGITEDALDH 571
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6838.17793.1 vs. uniprot
Match: A0A6H5JDE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE7_9PHAE)

HSP 1 Score: 473 bits (1216), Expect = 3.110e-164
Identity = 260/305 (85.25%), Postives = 269/305 (88.20%), Query Frame = 1 
Query:  379 YLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRGGSDGLERVDWLVSGLKWASPGTFAAATWAKV------FTQEKIRWLTFQAGAVILGHTLTSYYLPSLELGRLASSLLAAWKNSRNGDNSRNDDHRGTSRSRXXXXXXXXXRRTDGPQLLRLLPFGRGSGDHDDGTVARGGHGHSRNHAGESFHHDGNEDDDSTNDNGSVQDDNNDSGRLGAREPVTPGPERAANGSSFGGSRRASGQGSARADGLDGLKRQELQSLAKKTDGVVRANLSTPNIIRGLRELGITGDALDH 1275
            YLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRGG DGLERVDWL+SGL+WASPGTFAAATWAKV      FTQEKIRWLTFQAGAVILGH LTSYYLPSLELGRLASSLLAAW  SRNGDNSRNDDHRGTSRSR         RRTDG QLLR L  GRGSGD D+GTVAR GHG SRNHAGESF HDGN+DD S ND+GSVQDD ++SG LGAR+PVTPGP RAANGS  GGSRRASGQG+ARADGLDGLKRQELQSLAKKTDGVVRANLST NIIRGLRELGIT DALDH
Sbjct:    4 YLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRGGLDGLERVDWLLSGLRWASPGTFAAATWAKVANRLKVFTQEKIRWLTFQAGAVILGHALTSYYLPSLELGRLASSLLAAWMKSRNGDNSRNDDHRGTSRSREGHGSATDDRRTDGLQLLRPLTVGRGSGDRDNGTVARTGHGRSRNHAGESFQHDGNQDD-SINDDGSVQDDIDNSGGLGARQPVTPGPGRAANGSGNGGSRRASGQGNARADGLDGLKRQELQSLAKKTDGVVRANLSTLNIIRGLRELGITEDALDH 307
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6838.17793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF6_ECTSI3.410e-20178.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDE7_9PHAE3.110e-16485.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6838contigEcto-sp13_S_contig6838:313..3981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score590.1
Seed ortholog evalue8.2e-166
Seed eggNOG ortholog2880.D8LGF6
Model size1278
KEGG koko:K18171,ko:K18626
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0007275,GO:0008150,GO:0009553,GO:0009555,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0016020,GO:0016021,GO:0022414,GO:0031224,GO:0031226,GO:0032501,GO:0032502,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071944
Exons7
EggNOG OGs28IPK@1,2QR0N@2759
Ec32 ortholog descriptionNuclear fusion protein, KAR5
Ec32 orthologEc-16_003860.1
Cds size1278
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6838.17793.1prot_Ecto-sp13_S_contig6838.17793.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6838 313..3981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463939.7010055-CDS-Ecto-sp13_S_contig6838:312..4561681463939.7010055-CDS-Ecto-sp13_S_contig6838:312..456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6838 313..456 +
1681463939.717663-CDS-Ecto-sp13_S_contig6838:774..9051681463939.717663-CDS-Ecto-sp13_S_contig6838:774..905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6838 775..905 +
1681463939.7345192-CDS-Ecto-sp13_S_contig6838:1131..12331681463939.7345192-CDS-Ecto-sp13_S_contig6838:1131..1233Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6838 1132..1233 +
1681463939.7496328-CDS-Ecto-sp13_S_contig6838:1762..19221681463939.7496328-CDS-Ecto-sp13_S_contig6838:1762..1922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6838 1763..1922 +
1681463939.7604074-CDS-Ecto-sp13_S_contig6838:2229..22981681463939.7604074-CDS-Ecto-sp13_S_contig6838:2229..2298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6838 2230..2298 +
1681463939.7713444-CDS-Ecto-sp13_S_contig6838:2844..33991681463939.7713444-CDS-Ecto-sp13_S_contig6838:2844..3399Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6838 2845..3399 +
1681463939.7819865-CDS-Ecto-sp13_S_contig6838:3864..39811681463939.7819865-CDS-Ecto-sp13_S_contig6838:3864..3981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6838 3865..3981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6838.17793.1

>prot_Ecto-sp13_S_contig6838.17793.1 ID=prot_Ecto-sp13_S_contig6838.17793.1|Name=mRNA_Ecto-sp13_S_contig6838.17793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=426bp
KVLRGQELASAQSQGIADGLSETSTRIAGLSDSLSQELASAMREIEKQET
LLASLLTRQDVAATQASSLSTELNNAKSDLASYMEAIEEDRRATKDQNHD
LMETIGFIHDCLDNASSAWARFQAFTYLILAANLCWVLTTAPPLRSARTA
LFALVAFGLLLEKSLCGGDDRGGSDGLERVDWLVSGLKWASPGTFAAATW
AKVFTQEKIRWLTFQAGAVILGHTLTSYYLPSLELGRLASSLLAAWKNSR
NGDNSRNDDHRGTSRSREGHGSANDDRRTDGPQLLRLLPFGRGSGDHDDG
TVARGGHGHSRNHAGESFHHDGNEDDDSTNDNGSVQDDNNDSGRLGAREP
VTPGPERAANGSSFGGSRRASGQGSARADGLDGLKRQELQSLAKKTDGVV
RANLSTPNIIRGLRELGITGDALDH*
back to top

mRNA from alignment at Ecto-sp13_S_contig6838:313..3981+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6838.17793.1 ID=mRNA_Ecto-sp13_S_contig6838.17793.1|Name=mRNA_Ecto-sp13_S_contig6838.17793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6838:313..3981+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTCCTGAGAGGCCAGGAACTAGCCTCCGCGCAGAGTCAGGGCATCGC
CGACGGGCTGAGCGAGACGAGCACGAGGATAGCGGGTCTTTCAGACAGCC
TGTCTCAAGAACTGGCATCGGCAATGAGGGAGATAGAAAAGCAGGTCGGT
CGTCTGCGGTCGGTTGGTCTTGTCGTGAGCAATTAGCTTGTGGTTGGCAC
CTCAGCAGACCAGTCGGTACGCTCTCTGGAGAACTACGCTGCTCGTGATG
TAGTGCACCATGGTGGAGACAATACGGGAAGTGAAGCGGGTGTCATATCA
TAGAACTGCGTACGCTGCGTAGAAATATACCCCCCACACCTTCCTTCGCT
GCCATATTCTCCTCCGCTCCTGGCCATGTATCTCCACTCACGACTCAAGA
GCTCCAAAAGTGCTCCTTCAATTAAGAGCTATCTCACCGCCCGGTTCGAA
CAAAAACAACAGGAAACCTTGCTCGCGAGTCTGCTAACAAGGCAGGACGT
TGCGGCTACACAAGCGTCAAGCTTGTCGACCGAGCTCAACAATGCCAAGT
CTGACCTCGCGTCTTACATGGAGGCCATCGAGGAAGACCGCAGGTCAGGC
GGGGGTTCCGGTATATGGGGACTGGGGTTGGATCGGAAAAGGGCAGGGGG
GGGGAGGGGGCAGTCGCAGCTTGGTGTGTTTTAGAGCTAACATCAACGTG
GGCACATGGTACTCTGAAGCTCCACCGCTGAAGCAAAAATAGTTGATGCC
CAATTTAACCCTTCACAAATTGATATTCGATGGAATACTAACCGTGTCGC
GCATTGTTGTTGTCCACAGGGCAACAAAGGACCAAAATCACGACCTAATG
GAAACGATCGGTTTTATCCACGACTGCCTGGACAACGCCAGCTCTGCGTG
GGCGAGGTTTCAGGCTTTCACGTACGGGACTGTCTTATCTATCTACCATG
GCCACAGTACATGGGCAACCCTAGGGAGAAATTGAATGCAAACAAACCAG
AAAAGAAATAGAGATTCATGGAGATCACACAACGAGCAAACCGAAAGAAA
GAGAGACAGGACGCGGGCAGGAGCGGTGGTGTTCTGAAGGCCATGGACGA
CCTTGTCGCGACACGATCGACAGCCGTCCACAATCCGCACCTAGGACTTT
CTACTCGCCAGGGGTCCCTGCTTTTTCCGTGCAAAGAGCACGTGACCGCT
AGTTAGTGCTTCGCATACAGAACGCGCCGCCACCACTTAAGAACCTCTTC
GTTGGCCGAGGCCCGTTTCTTTGTCTAGGGGGTAGACTACCCCCACGGCG
ACTATATAGGTTTTAGTAAACTGTAGGATTCTCGACTTAGAACCTGTTCT
TATGGCCAACTTCTTAGATTTTGTTTCGTTCAGTTCTTGACTTCTCTAAG
GTAGGTTCCTAAGTGGTGGCGCGTTCCGAAACGCTTGCTCTTGCCCCCAG
GTACCTTATCCTCGCGGCGAACCTCTGCTGGGTGCTGACGACCGCCCCCC
CGCTCCGCTCGGCAAGGACGGCTCTCTTTGCGCTCGTCGCTTTCGGCCTC
CTGCTCGAGAAGAGCCTGTGCGGCGGTGACGACCGCGGTGGCTCGGATGG
ACTTGAAAGGGTACACGTTGTTACACCCAGATGATACCCCCAATTGGTTG
TCTGTGGTTGTTGTCTCGAGAATGCCTCGGCGCGGAACGTTTTGGTGTTT
CAGAACCAACGTAAATATACAAGGAGTGAACCGGCAAGAGACCGCGAGTT
TCCCTGTCCTGGGTATGTAAAGCTTGACGCGGAGATGTCCGTTCTCTAGG
CATGGGGGAAGTTTTTACGGAGCGTGCCGGCATGCGTTCGTTCGATAGAG
TGTATTTCGAGATGCTCTCTTTGTGCACCTAACCGTGGATGCCCGAACAC
AAACCGATAACTCGCAGGTCGACTGGCTGGTGTCCGGGCTCAAATGGGCG
TCGCCCGGGACGTTCGCCGCAGCAACGTGGGCGAAGGTGAAAGTGGGGAG
TGATCCTGCATGAACTCCACGACCGGGCTTGTTGTGGGAAACGACTTGGA
CCTATTTGTTCTTCCGTGACCCAAAAGAAGAGATAAACACGCGCGAGAGA
ACCCCAGAGTGCATAACGGTCAATACTTCGTCTAAAGCGTCGGGTAGGAA
TCATTGGAATGAGCTCGAAGTGATTTGAACAGCGACAAGTTCGGGTCTCA
AGTCCATTGTTACACCTTGGTGGCTCCTTGTGCGGCTGGTCGTAGTGAAG
GCAATGTTATCATCCACATATTGTTGTCTCTTTGAAAGTCGACGAAAAAT
CGGAGATCAAATGGTATGGTTTGGTGCTTTTAGGAAACAGAGCAGTCGTC
TCGATTCCTCAGAGAATATTCCAAACCTGGGTACAAGAACCGGTGGTCTT
TGACTTAGAAACGAGACACACAAGCGGCCGCGGCCCTGAAGCCTGCCCCT
GAGCTGCAGGTGGCTAACAAACTACAGGTGGGTACCACCTGTCGCCCGTC
GCCCCCCCCCCCCTCATTTTGGTGCTGCGCAGGTTTTCACTCAGGAGAAA
ATCCGGTGGCTGACGTTTCAGGCTGGCGCTGTCATTCTCGGCCACACTCT
TACATCGTACTACCTCCCCTCCCTGGAACTGGGGCGGCTTGCCAGTTCGC
TATTGGCAGCATGGAAAAACAGTCGCAATGGCGACAACAGCAGAAACGAC
GATCATCGAGGTACGTCACGATCAAGAGAAGGGCATGGTTCTGCTAACGA
TGATAGACGCACGGATGGACCACAGCTGCTTCGTCTGCTGCCGTTCGGCC
GCGGTAGCGGCGACCACGACGACGGTACGGTCGCAAGAGGAGGCCACGGC
CATTCAAGGAACCACGCCGGAGAATCGTTCCACCACGACGGCAACGAGGA
CGATGATAGTACCAACGATAATGGATCGGTTCAGGACGACAATAATGACT
CGGGGAGACTCGGTGCGAGGGAACCGGTCACGCCTGGACCGGAAAGAGCT
GCAAACGGGAGTAGTTTCGGTGGAAGCCGCAGGGCTTCGGGGCAGGGGAG
CGCGAGGGCCGATGGGCTTGATGGCCTCAAGCGACAGGTATTGCTTGCTT
CTTTGCTGCATAAAATGACTGTGTGCCTGCGCACGGAGGCCTCCTCGACG
CTGTTTATTCATAGTCGAATTGTAGACACAGGGCTACAGGAGTGAGTGCG
TCTCGACGACCCCGACGTTTCCCGGACCTGTGTGTGCGGGAGTTGCGGTC
GGTTCCGCCAATCACTCCCATAATTAAAAGGTTTCCTCCCTCCGCTTCAA
CAACAAAGTTATTGATTTGTCGAGGAATTGAGAATCATCACTGGAGGGCG
CTTGTTGCCGAAGCCGCCACCACGATGAGGTGCGGTAATGAACACGGTAT
TCGAGCGCTAGCAGAAGAACTCTTCTCCACAAAAAAAATGCAAAGTTGAG
AGCAAGAGGTCTATGAAAGTGGCATCATCGGCATTGTCCTTGTCTTCCCT
CCGCCATCCTTGTCTTTCATGACTTGTGGTCGTCGTACTCAATCCTCGGC
AGGAGCTCCAATCACTGGCCAAGAAAACCGACGGCGTGGTCAGGGCCAAC
CTGTCAACACCTAATATCATCAGGGGACTGCGGGAACTCGGCATCACAGG
AGATGCGCTTGATCACTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6838:313..3981+

>mRNA_Ecto-sp13_S_contig6838.17793.1 ID=mRNA_Ecto-sp13_S_contig6838.17793.1|Name=mRNA_Ecto-sp13_S_contig6838.17793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6838:313..3981+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTCCTGAGAGGCCAGGAACTAGCCTCCGCGCAGAGTCAGGGCATCGC
CGACGGGCTGAGCGAGACGAGCACGAGGATAGCGGGTCTTTCAGACAGCC
TGTCTCAAGAACTGGCATCGGCAATGAGGGAGATAGAAAAGCAGGAAACC
TTGCTCGCGAGTCTGCTAACAAGGCAGGACGTTGCGGCTACACAAGCGTC
AAGCTTGTCGACCGAGCTCAACAATGCCAAGTCTGACCTCGCGTCTTACA
TGGAGGCCATCGAGGAAGACCGCAGGGCAACAAAGGACCAAAATCACGAC
CTAATGGAAACGATCGGTTTTATCCACGACTGCCTGGACAACGCCAGCTC
TGCGTGGGCGAGGTTTCAGGCTTTCACGTACCTTATCCTCGCGGCGAACC
TCTGCTGGGTGCTGACGACCGCCCCCCCGCTCCGCTCGGCAAGGACGGCT
CTCTTTGCGCTCGTCGCTTTCGGCCTCCTGCTCGAGAAGAGCCTGTGCGG
CGGTGACGACCGCGGTGGCTCGGATGGACTTGAAAGGGTCGACTGGCTGG
TGTCCGGGCTCAAATGGGCGTCGCCCGGGACGTTCGCCGCAGCAACGTGG
GCGAAGGTTTTCACTCAGGAGAAAATCCGGTGGCTGACGTTTCAGGCTGG
CGCTGTCATTCTCGGCCACACTCTTACATCGTACTACCTCCCCTCCCTGG
AACTGGGGCGGCTTGCCAGTTCGCTATTGGCAGCATGGAAAAACAGTCGC
AATGGCGACAACAGCAGAAACGACGATCATCGAGGTACGTCACGATCAAG
AGAAGGGCATGGTTCTGCTAACGATGATAGACGCACGGATGGACCACAGC
TGCTTCGTCTGCTGCCGTTCGGCCGCGGTAGCGGCGACCACGACGACGGT
ACGGTCGCAAGAGGAGGCCACGGCCATTCAAGGAACCACGCCGGAGAATC
GTTCCACCACGACGGCAACGAGGACGATGATAGTACCAACGATAATGGAT
CGGTTCAGGACGACAATAATGACTCGGGGAGACTCGGTGCGAGGGAACCG
GTCACGCCTGGACCGGAAAGAGCTGCAAACGGGAGTAGTTTCGGTGGAAG
CCGCAGGGCTTCGGGGCAGGGGAGCGCGAGGGCCGATGGGCTTGATGGCC
TCAAGCGACAGGAGCTCCAATCACTGGCCAAGAAAACCGACGGCGTGGTC
AGGGCCAACCTGTCAACACCTAATATCATCAGGGGACTGCGGGAACTCGG
CATCACAGGAGATGCGCTTGATCACTAG
back to top