mRNA_Ecto-sp13_S_contig6834.17790.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6834.17790.1
Unique NamemRNA_Ecto-sp13_S_contig6834.17790.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6834.17790.1 vs. uniprot
Match: D8LDD1_ECTSI (Similar to ATP binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD1_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 3.150e-123
Identity = 193/227 (85.02%), Postives = 195/227 (85.90%), Query Frame = 1 
Query:  220 MNLGGMEAIAQQVAGKAILDHAKETEQKLDAKLAKLDNMDEDDLDKLREKRKAQLIAAQKIKQDNLSNGHGRYSELPDQPAFFDATKKSKWMAVHFYRPTTQRCQIVDGHLDRLAQKHIETRFCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNFEGEPPSDPTKASAGVNSIAMKMLGKGAARAGAREGDEADY 900
            MNLGGMEAIAQQVAGKAILDHAKETEQKLDAKLAKLDNMDEDDLDKLREKRKAQLIAAQKIKQDNLSNGHGRYSELPDQPAFF+ATKKSK                                FCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNF+GEPPSDPTKASAGVNSIAMKMLGKGAARAGAREGDEADY
Sbjct:    1 MNLGGMEAIAQQVAGKAILDHAKETEQKLDAKLAKLDNMDEDDLDKLREKRKAQLIAAQKIKQDNLSNGHGRYSELPDQPAFFEATKKSK--------------------------------FCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNFDGEPPSDPTKASAGVNSIAMKMLGKGAARAGAREGDEADY 195
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BLAST of mRNA_Ecto-sp13_S_contig6834.17790.1 vs. uniprot
Match: A0A836CBP1_9STRA (ATP binding protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP1_9STRA)

HSP 1 Score: 301 bits (771), Expect = 6.770e-98
Identity = 149/227 (65.64%), Postives = 176/227 (77.53%), Query Frame = 1 
Query:  220 MNLGGMEAIAQQVAGKAILDHAKETEQKLDAKLAKLDNMDEDDLDKLREKRKAQLIAAQKIKQDNLSNGHGRYSELPDQPAFFDATKKSKWMAVHFYRPTTQRCQIVDGHLDRLAQKHIETRFCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNFEGEPPSDPTKASAGVNSIAMKMLGKGAARAGAREGDEADY 900
            MNLGG+EAIA ++AG+AILDHAK+TE KLD ++AKLD MDEDD +KLRE+RK Q++     +Q+  +NGHGR SEL DQ  FF A KKS  MAVHFYRPTT RC IVD  ++RLA +H+ETRFC+IDAEKSPYL EKLNI VMPTILL+K G T+HQIRGF+ELGGTDDFHED LA+V+SQYG   FEG+PP DPTK S GVNSI M   GK     G  + D+  Y
Sbjct:    1 MNLGGLEAIASEIAGQAILDHAKDTESKLDERIAKLDQMDEDDFEKLRERRKLQMMKQHVKEQEWRANGHGRCSELSDQGEFFAAAKKSSSMAVHFYRPTTARCAIVDARMERLAPRHVETRFCRIDAEKSPYLVEKLNIVVMPTILLVKDGKTVHQIRGFDELGGTDDFHEDMLAWVISQYGCCKFEGDPPMDPTKRS-GVNSIGMAFAGKSIREGGGLDSDDEGY 226
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BLAST of mRNA_Ecto-sp13_S_contig6834.17790.1 vs. uniprot
Match: A0A4D9D6P5_9STRA (Thioredoxin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6P5_9STRA)

HSP 1 Score: 219 bits (559), Expect = 8.830e-66
Identity = 113/219 (51.60%), Postives = 149/219 (68.04%), Query Frame = 1 
Query:  244 IAQQVAGKAILDHAKETEQKLDAKLAKLDNMDEDDLDKLREKRKAQLIAAQKIKQDNLSNGHGRYSELPDQPAFFDATKKSKWMAVHFYRPTTQRCQIVDGHLDRLAQKHIETRFCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNFEGEPPSDPTKASA--GVNSIAMKMLGKGAARAGAREGDEA 894
            + Q+VA + IL  A+E E KLD ++ KL+ ++EDD D LR++R  +L  A++ K      GHG Y+EL  Q  FFDA K S  +  HFYRPTT+ CQ+VD H+ RLA +HIETRFCKI+AEKSPYL EKLN+++MPTI+ IK   T H I+G +ELGGTD+F  D  A+VLS + VLN++G  P  PT+A+   GVNSI M M G G    G R G+ +
Sbjct:    5 VFQEVASQQILQLAQEEEAKLDREILKLETLNEDDFDNLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTTKYCQVVDFHMARLAVRHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPTQAAKKKGVNSIRMAMTGPGGLAPGRRGGNSS 223
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BLAST of mRNA_Ecto-sp13_S_contig6834.17790.1 vs. uniprot
Match: A0A7S1BMM5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMM5_9STRA)

HSP 1 Score: 215 bits (548), Expect = 3.760e-64
Identity = 111/234 (47.44%), Postives = 162/234 (69.23%), Query Frame = 1 
Query:  220 MNLGGMEAIAQQVAGKAILDHAKETEQKLDAKLAKLDNM--DEDDLDKLREKRKAQLIAAQKIKQDNLSNGHGRYSELPDQPAFFDATKKSKWMAVHFYRPTTQRCQIVDGHLDRLAQKHIETRFCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNFEGEPPSDPTKASAGVNSIAMKML-----GKGAARAGAREGD-EAD 897
            +  G    +  Q A  A+L H K  E+K+DA L+K D++  DE+ LD+LR++R  ++ A ++ +Q+  + GHGRY+EL +   FF+A K S  + VHFYRPTT+ C++VD HL++L++K+IETRF K++AEK+ YL EKLNIF+MPTILL+K G  +H IRGF+ELGGT +F  D LA+ ++QY ++ F+GE P +  K  AGVN+I M+ +     G  + R G R+GD EAD
Sbjct:   10 LGFGAQNQVVGQAAAAAVLSHTKAQEEKIDADLSKYDDLLNDEEALDRLRQRRLEEMKARRRREQECRAAGHGRYAELGETKEFFEAAKTSDRLVVHFYRPTTRYCEVVDAHLEKLSKKYIETRFVKMNAEKTDYLVEKLNIFMMPTILLVKAGKVVHHIRGFDELGGTAEFSTDLLAWAMAQYDLVQFDGEMPEEYMK-EAGVNAIQMRKIQGTYAGAASIREGLRDGDGEAD 242
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BLAST of mRNA_Ecto-sp13_S_contig6834.17790.1 vs. uniprot
Match: A0A6V1PIS8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PIS8_HETAK)

HSP 1 Score: 214 bits (546), Expect = 7.730e-64
Identity = 105/186 (56.45%), Postives = 135/186 (72.58%), Query Frame = 1 
Query:  244 IAQQVAGKAILDHAKETEQKLDAKLAKLDNMDEDDLDKLREKRKAQLIAAQKIKQDNLSNGHGRYSELPDQPAFFDATKKSKWMAVHFYRPTTQRCQIVDGHLDRLAQKHIETRFCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNFEGEPPSD 801
            + Q+  G+ +L  A+  EQK+D ++ KL+N+DEDD +KLR+ R+ +L+  Q  +Q+ L N HGRY+E+ DQ  FFDATKKSK M  HFYR  TQRCQIVD HL  LA +H+ETRF KIDAEKSP+L E+LNIF+MPT+L IK G   H +RGF+ELGG DDF    LA  L+ +GVLN+EG  P D
Sbjct:   11 MVQEAVGEQMLKAAQSREQKMDEEIQKLENLDEDDFEKLRQARRERLMKQQVERQEWLQNDHGRYTEIGDQQQFFDATKKSKRMVAHFYRAATQRCQIVDRHLGDLAPRHLETRFVKIDAEKSPFLVERLNIFMMPTVLCIKEGKVAHHLRGFDELGGHDDFPTAALACALAAHGVLNYEGPDPGD 196
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BLAST of mRNA_Ecto-sp13_S_contig6834.17790.1 vs. uniprot
Match: A0A7S2FZE2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZE2_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.120e-63
Identity = 111/227 (48.90%), Postives = 151/227 (66.52%), Query Frame = 1 
Query:  244 IAQQVAGKAILDHAKETEQKLDAKLAKLDNMDEDDLDKLREKRKAQLIAAQKIKQDNLSNGHGRYSELPDQPAFFDATKKSKWMAVHFYRPTTQRCQIVDGHLDRLAQKHIETRFCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNFEGEPPS---DPTKASAGVNSIAMKMLGKGAARAGAREG-----DEADY 900
            + +QVAG  +L   K+ E ++D K+A++  MDEDD +K+RE+RK  +I AQ+ KQ N+SNGHGRY EL DQ  FF A+K SK + VHFYR TT RCQI+D HLD LAQ H ETRF KID EK+P+L EKL I ++PT+L +K   T H I GF+E+GG+DDF  + LA VL+ + VL ++G  P    D  +   G+NSI M+ +   + R G   G     D++D+
Sbjct:   19 VQEQVAG-TVLRALKDKEMQMDQKIAEMQTMDEDDFEKIRERRKVAMIKAQREKQKNISNGHGRYMELSDQKEFFQASKDSKQLCVHFYRSTTFRCQILDRHLDILAQTHPETRFVKIDVEKAPFLVEKLRIVMLPTLLCVKNAKTEHAIIGFDEMGGSDDFPTENLAAVLASFNVLTYDGPSPGEDEDGIRRKGGINSIDMRRMQGNSIRTGLNNGAADSEDDSDF 244
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BLAST of mRNA_Ecto-sp13_S_contig6834.17790.1 vs. uniprot
Match: A0A7S2XYB6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYB6_9STRA)

HSP 1 Score: 205 bits (522), Expect = 2.430e-60
Identity = 108/227 (47.58%), Postives = 144/227 (63.44%), Query Frame = 1 
Query:  220 MNLGGMEAIAQQVAGKAILDHAKETEQKLDAKLAKLDNMDEDDLDKLREKRKAQLIAAQKIKQDNLSNGHGRYSELPDQPAFFDATKKSKWMAVHFYRPTTQRCQIVDGHLDRLAQKHIETRFCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNFEGEPPSDPTKASAGVN----SIAMKMLGKGAARAGAREGD 888
            MN   +   AQ +AG+ +L  AKE E+KLD  + +L+NMDEDD + LR++                SNGHG Y EL +Q  FF+A KKS  M VHFYRP+T+ C  +D HL +LA +H+ETRF KIDAEKS +L E+LNIF+MPT+LL+K G + HQIRGF+ELGGTD F    LA+VLSQ+ +++++G PP D     +G      S   K  G  + R G +E D
Sbjct:    1 MNDQAIMQAAQNIAGQHVLQAAKEEERKLDETINRLENMDEDDFEVLRQRXXXXXXXXXXXXXXWTSNGHGHYQELQNQQDFFEAAKKSSQMVVHFYRPSTRHCATLDEHLGKLAPRHVETRFVKIDAEKSQFLCERLNIFMMPTLLLVKDGQSFHQIRGFDELGGTDQFPTKMLAWVLSQHNIISYDGGPPEDLNFEGSGAGPTLFSRRAKRGGTNSIRVGLQEQD 227
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BLAST of mRNA_Ecto-sp13_S_contig6834.17790.1 vs. uniprot
Match: A0A0B2USW7_TOXCA (Thioredoxin domain-containing protein 9-like protein n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2USW7_TOXCA)

HSP 1 Score: 193 bits (490), Expect = 8.060e-56
Identity = 91/184 (49.46%), Postives = 134/184 (72.83%), Query Frame = 1 
Query:  235 MEAIAQQVAGKAILDHAKETEQKLDAKLAKLDNMDEDDLDKLREKRKAQLIAAQKIKQDNLSNGHGRYSELPDQPAFFDATKKSKWMAVHFYRPTTQRCQIVDGHLDRLAQKHIETRFCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNFEG 786
            M +  QQV G+ +L  A   EQ+LD ++ ++DN+D DD++ +R  R  +L   Q  KQ+ L NGHG+Y ELPD+PAFF+ATKKS  M VHF+RP+T+RC+IVD HL ++A +H+E RF  ++ EKSP+LT++LNI V+PT+ ++    T+  IRGF++LGG DDF  +TL + LSQ GV++++G
Sbjct:    1 MASSVQQVLGEQLLKAAAVVEQQLDQQMERMDNLDMDDIESIRRTRMEELKKKQLEKQEWLRNGHGKYEELPDEPAFFEATKKSNRMVVHFFRPSTERCKIVDMHLRKIAPRHLEARFVCVNVEKSPFLTKRLNIRVLPTLAVVMNSKTVDYIRGFDDLGGIDDFKTETLEWRLSQSGVIDYDG 184
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BLAST of mRNA_Ecto-sp13_S_contig6834.17790.1 vs. uniprot
Match: A0A812YQU0_SYMMI (Txndc9 protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YQU0_SYMMI)

HSP 1 Score: 191 bits (486), Expect = 3.590e-55
Identity = 104/211 (49.29%), Postives = 138/211 (65.40%), Query Frame = 1 
Query:  238 EAIAQQVAGKAILDHAKETEQKLDAKLAKLDNMDEDDLDKLREKRKAQLIAAQKIKQDNLSNGHGRYSELPDQPA-FFDATKKSKWMAVHFYRPTTQRCQIVDGHLDRLAQKHIETRFCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNFEGEPPSDPTK--ASAGVNSIAMKMLGKGA 861
            +A   +  G  IL  A+  E+KLD ++  ++N+DE+D + LREKR+  L    + +QD    GHGRY +L   P  FF+A KKS  M VHFYR  T RC IVD H ++LA KH+ETRF KI+AEKSP+L E+L I +MPTI+LIK G T H +RGF+ELGGTDDF  D +A+VLS +GVLNFE +         A AG+N + +  +  GA
Sbjct:    5 QAQMMERVGDGILAVAEMEEKKLDQQIKDIENLDEEDFEALREKRRVALQQRIRQEQDWKQLGHGRYLDLGTDPKEFFNAAKKSARMVVHFYRGVTPRCDIVDAHFEKLAPKHLETRFVKINAEKSPFLVERLGIILMPTIVLIKDGKTEHSLRGFDELGGTDDFSTDDMAYVLSTHGVLNFEIDRSEMIANHSARAGLNHVGISQIRSGA 215
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BLAST of mRNA_Ecto-sp13_S_contig6834.17790.1 vs. uniprot
Match: A0A7S0SSS6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSS6_9STRA)

HSP 1 Score: 189 bits (479), Expect = 3.700e-54
Identity = 95/195 (48.72%), Postives = 135/195 (69.23%), Query Frame = 1 
Query:  262 GKAILDHAKETEQKLDAKLAKLDNMDEDDLDKLREKRKAQLIAAQKIKQDNLSNGHGRYSELPDQPAFFDATKKSKWMAVHFYRPTTQRCQIVDGHLDRLAQKHIETRFCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNFEGEPPSDPTK--ASAGVNSIAM 840
            G+ IL  A+  EQKLDAKL  L+N+DEDD + LR+KRK ++    K +Q+ +  GHG+Y E+ D   FF   KKS+ + VHFYR  T RC+IVD HL +LAQ H+ET+F K++ EK+P+L EKL+I ++PTI+LI  G T H I GF+E GGTDDF  D +A+VLS + VLN++G+   + +   A+ G+N + +
Sbjct:   13 GEGILQAAQAEEQKLDAKLKALENLDEDDFEILRQKRKLEMQKKMKQQQNWIQLGHGKYDEINDTKEFFTLAKKSERLVVHFYRGVTPRCEIVDAHLIKLAQTHVETKFMKVNVEKNPFLVEKLHIIMIPTIVLIINGKTSHSIIGFDEFGGTDDFTTDDVAYVLSTHKVLNYDGDRSEEISNRLANTGLNRLRL 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6834.17790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDD1_ECTSI3.150e-12385.02Similar to ATP binding protein n=1 Tax=Ectocarpus ... [more]
A0A836CBP1_9STRA6.770e-9865.64ATP binding protein-like protein n=1 Tax=Tribonema... [more]
A0A4D9D6P5_9STRA8.830e-6651.60Thioredoxin domain-containing protein n=3 Tax=Mono... [more]
A0A7S1BMM5_9STRA3.760e-6447.44Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6V1PIS8_HETAK7.730e-6456.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2FZE2_9STRA1.120e-6348.90Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2XYB6_9STRA2.430e-6047.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0B2USW7_TOXCA8.060e-5649.46Thioredoxin domain-containing protein 9-like prote... [more]
A0A812YQU0_SYMMI3.590e-5549.29Txndc9 protein n=2 Tax=Symbiodinium microadriaticu... [more]
A0A7S0SSS6_9STRA3.700e-5448.72Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6834contigEcto-sp13_S_contig6834:655..6632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score363.6
Seed ortholog evalue6.7e-98
Seed eggNOG ortholog2880.D8LDD1
Model size1293
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.queuosine biosynthetic process
EggNOG OGsCOG0526@1,KOG1672@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-25_001710.1
Cds size684
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6834.17790.1prot_Ecto-sp13_S_contig6834.17790.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6834 874..6242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463939.3601444-UTR-Ecto-sp13_S_contig6834:654..8731681463939.3601444-UTR-Ecto-sp13_S_contig6834:654..873Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6834 655..873 +
1681463939.4458284-UTR-Ecto-sp13_S_contig6834:6242..66321681463939.4458284-UTR-Ecto-sp13_S_contig6834:6242..6632Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6834 6243..6632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463939.3732488-CDS-Ecto-sp13_S_contig6834:873..9601681463939.3732488-CDS-Ecto-sp13_S_contig6834:873..960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6834 874..960 +
1681463939.3838575-CDS-Ecto-sp13_S_contig6834:1858..19601681463939.3838575-CDS-Ecto-sp13_S_contig6834:1858..1960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6834 1859..1960 +
1681463939.3937433-CDS-Ecto-sp13_S_contig6834:2998..30791681463939.3937433-CDS-Ecto-sp13_S_contig6834:2998..3079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6834 2999..3079 +
1681463939.4036953-CDS-Ecto-sp13_S_contig6834:3570..36661681463939.4036953-CDS-Ecto-sp13_S_contig6834:3570..3666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6834 3571..3666 +
1681463939.4146204-CDS-Ecto-sp13_S_contig6834:4233..43381681463939.4146204-CDS-Ecto-sp13_S_contig6834:4233..4338Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6834 4234..4338 +
1681463939.4268537-CDS-Ecto-sp13_S_contig6834:5641..57091681463939.4268537-CDS-Ecto-sp13_S_contig6834:5641..5709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6834 5642..5709 +
1681463939.4371526-CDS-Ecto-sp13_S_contig6834:6097..62421681463939.4371526-CDS-Ecto-sp13_S_contig6834:6097..6242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6834 6098..6242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6834.17790.1

>prot_Ecto-sp13_S_contig6834.17790.1 ID=prot_Ecto-sp13_S_contig6834.17790.1|Name=mRNA_Ecto-sp13_S_contig6834.17790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
MNLGGMEAIAQQVAGKAILDHAKETEQKLDAKLAKLDNMDEDDLDKLREK
RKAQLIAAQKIKQDNLSNGHGRYSELPDQPAFFDATKKSKWMAVHFYRPT
TQRCQIVDGHLDRLAQKHIETRFCKIDAEKSPYLTEKLNIFVMPTILLIK
GGHTIHQIRGFEELGGTDDFHEDTLAFVLSQYGVLNFEGEPPSDPTKASA
GVNSIAMKMLGKGAARAGAREGDEADY*
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mRNA from alignment at Ecto-sp13_S_contig6834:655..6632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6834.17790.1 ID=mRNA_Ecto-sp13_S_contig6834.17790.1|Name=mRNA_Ecto-sp13_S_contig6834.17790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5978bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6834:655..6632+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACACCTTGTACGACAATAAGAGAGTGATAACCCACGGAGACGGCTGTGC
ACCCCTTTTGTTCCCCAACTATCACCATAGTTGCCATTACGGAAGGTTAC
TGGCATCTACCCGCTGCGGTCGAGTAACACGCCGGAGGACGCCGAACCGA
GCAGTGTTTTAAAACTCTCTTTTCAAGTTTAAAAATCCACAAGGAGGCGA
GCTGTTACGAGACGACATCATGAATCTCGGTGGCATGGAAGCTATCGCTC
AGCAGGTGGCCGGGAAGGCCATCCTGGATCACGCGAAGGAAACGGAGCAA
AAGCTGGTGAGACGTGCGCGTTGTGGAGAAGAGGTTTACAAGAAATCTAC
TTGTGCTTTAGCTGCGGGAACCTGCGTTGCTTTGTAAACTCCGACACTGC
TGTCTACCAGAGGTGACGTAATATACCACGCCCCTTAGACCGGTTTTCAA
CGCGCGACTCCTCCACGACGAAGCGGATGCCAAACTCAACTGACACGTTT
CCGGAAAGATCTCGACGAACCGGTTCTAGCGACGCCATTTTGAGCACTGG
CACCCTACTGTGGGGTATTCGAGCTTCGAAAATCGGTCCACGGGGAGGGT
GTTATCTTGTGACGCAGTCGGTACAGGCAGTTTGGTTTGGTACCAAGACC
GTACGCTGCGGTAGCAATAGGTCGAGAAGTCTATCCGCAACATCCCAACG
CACGAGTTGGTGTGACAACACTGTGGGTATTTGCTTTCACTCAGTGCCGG
AAAATATAGCCAGGTGCAGTCTGTCAGGCATCCCACTTTTCGACGCCATA
CATTTCTCCGCACTCCGTCCGTTTTTGACCAGCGGTGACTCCGGTGTCTG
TGTGACACCTACAACGTAGCGTCGACTGAGCCGTAGGACTTTGCCTGTTG
AGGGCTCTTGCTGTAGCCTGTGGCTGACAGCACACCATCCGCGGCAGTAG
TGGTGGATAAGGCTGGTAGGTGCTAGCCCCTTTTGAACCGGTACTAAAGC
GGGCAACGGCATTATTCAAATTGAGTATTCGATCTGAGCCAGACGATTCC
ACCGGCATTGTACAGGGTAACGGACAATATGGCGGGACCACTGCTGTAGC
AACACGCGGCGAGGTCAATGCCGACATCAATGTCGGTCTATGCATACGAT
ACTAAACTAATTGTTTTATGCGGGACACGGAACGAACGTCCCGTCCCTCC
GCAGGACGCAAAACTGGCCAAGCTGGACAATATGGATGAGGACGACTTGG
ACAAGCTGAGGGAGAAGCGGAAGGCGCAGCTCATTGCCGCTCAGAAGATC
AAGCAGGTAAGGATACGGGCAGAGGCCAAAAAACGCGACCGATGGCTCGG
TCGGTAGTCGACGCAGGTCCTTCTAAGTAAGCAAGCATACTGGATACATT
ATAGCGGCTAAGTTGGGGTTAGGATTGCGGTCTGCGTGCCCCCTCTTTTG
TTCGGTCTTTTTTTCGTGGTAAACTTGCGAAAGCAGTCCGACTCGGTAAA
AGAGGTGGGCGGAATTGAGAGATCGACGCTGTCCCTTGCAGTGGGTGGCA
CCCTCATGCAAGTCATTCGTCATTGATCCCTGGACACGGAACAATAATAT
TGCGGAGCAGATGGCAACCGCATTTACGCATCAAAGGTGGTGTCTTAGGA
CGCAAGGTCAAGGTTGCGGCAGCAGTGAGAAGTCACGATTCGATGCGCCC
ACCTTCTCGGCAAACGCGGGGCTTGGCTTGAAATTGTGTTTTTGTCACTG
CATTTCGCGTAAGGACCCCTACCAGGCAAGCCCATCGTGCTTTTTAGGGG
GGTATGCTGCGTAGCTTAAAGTTCAGCAACGAAGTAAGACATCGAGCCTT
GACCCCGACAACCGGCTCTTCTTTTTCCGCGGACGACGACGACCGTGTCT
ACTGCTATCTTGAACTTCGACGCTACCCGCGGGTGTGTTTTCTGAGTCGT
CGGGGTCACTAACTCTCAAATTTACATCTCTGCAAGAAATCCAGCTCGGC
TCTTATCCTTGGACCCGCAAAAAATCGTCTTCAACCCCTGAAACATTTTC
ACCTGGCCGAATGCTTCAGGTATTCCAGGTTTTCCCCCCCCCGGCGCCAA
TAATAGAACACGCTCGTTACGCCGTGTTTTGCTCGAGGAGAGGCGCCAAT
GAGAATAGGCACCGCCTCCTGTGGAAACCCCGGCAGTTCGATGTGCGCCG
GCGAAGATGCGTTCGCGTTTGGTCACAAATCGTCCTTGTTTTTAGGACAC
CGTCCGCCGTGTGGATGTGTTTCTATTTCCACTCACACACATACACACAA
GAATCACACGCCCCTTGTTGCTGTTTTTTTTTCTTGGTAAACAGGACAAC
CTCTCGAACGGACACGGGCGGTACTCCGAGCTGCCTGACCAGCCCGCCTT
TTTTGACGCGACCAAGAAGAGCAAGGTTAGTAGTGAGATGGTGGTTCGAA
CTCGAGCGGTTATTGGTCTTCGTCTTCATTGCCTGCGTTGAGGATGAAGA
GAAGGGGAACCCTTGTTTGGTCCCTTCTTGATGCTTAATCGGTGTCTTGA
GATGCAGTTTTCTTTGGTCCATTTTGGTTCTCTTGTATGCATGTGACGTA
TGCAAGGCATGACGAGTGACTATCACGTACCTTTGTACGTTTGCTGGGGC
TGCCGCATCAACATCCTGCATCTGAAGAGCGCCCCCTTTTCAGCCAGAAC
AAGGGACTGCTTGCGACGACCGCTTCTCCTCGGCTTCGAGGAAGAAATAA
TTTTGTCCTGGCTGACTTTTCATTTTCATTTTTGTCTCTCTCCATCTTTC
TCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCCCTCTCTCTCTCTCTCTCTCTCCATCTCCATCTCTTTCTCTCTCT
TGACCTGGTGGTGCAGTGGATGGCAGTACACTTCTACCGCCCGACAACCC
AGAGGTGTCAAATCGTCGATGGCCACCTGGACCGCCTCGCCCAGAAGCAC
ATAGAGACTAGGGTAAGTCTTGTGTCAGAGTTTCAACAAATAGTTTATGC
AGAAGCTGTCAACGACAGCGTTGCTGTTGCCCACCCGTGCAGGAGCACCG
AGGTAAGTTTTGCCAGAGGTTCCAACAAACATTTCACGGTAGTGTATTGG
CTTCAGTTTCCTCAAACTTAGCACAGTCTTCCAGCTGGTTTTCTCCCCCT
CACTGCGAGAGACTTCAACACATCCTGTAGTTGTGTCTCGAATGGATACT
ATTTCTGTGATTGTGCGTGTATTTAAAAAAAGATATAGTCTACAACGATG
ACGTTGCTCTTGTCTACCCCGTGCAGGCGTTTGACGCGGCGTAAAAAAAA
AAAAAAAAACTCCCGTCCGATTGGCCATCGGTGATCGGTCCTGTGGGAAC
AACGCGCCGTCCTCTCGAGGATGCATGGTCAACGGTCTAACCGCTACAGC
ATACAAAATATAATAGTACGCCCCCACCCACCCCCCCATCCCCACCGAAC
CGTTTTTTTCGATCGTTTGCTTTTAATGCTGGCACCGGCCGTGACGTGAC
GTGATGGCTCGTGTTTTGCATCGTCGCAGTTCTGCAAGATCGACGCAGAG
AAGTCGCCGTACCTCACCGAGAAGCTCAACATCTTCGTCATGCCCACCAT
CCTCCTCATCAAGGGAGGTCACACAATACACCAGGCAAGAACGTTTGGGC
GTGGGGGGCTTGCGTAATGGACGGCACCGCATCGCGACGAAAGAGCTACG
TACAGCAGTAGTCAAGTGCTCTGGCCAGGTTTGGCGACCCCCCGTTTAGT
GCCATTGCTCTGTTGTAGCCACCACAAAAAATCGGGTGGCACCACGGCTG
CACGTCGCCCAGTAGCCGCTCTGCCGGCAATGGCGGCTTGCCCTGAAAGT
CCACCACACTGCAAAGTTGACACAAGACACCACACCCCGTGAAACTGTTT
ATTCAGCTCTATTTCTCCACAACATTTGAGCGTGATAGCGCCGAAAACGG
CGGCGTTGAAGCTGTCTCGTCGAGAAGGCTTCCGAAAACGTATCGTTTTC
CTCCGGCACCCTCTTCGTCGTGGAGTGACGGAGCTTTAGAAATTGGAAGC
AAGACGGGTGCTATCGAACTCGCCCTGCCGGGCTTTTCCCCAGCCCAGAT
GGTTCCCTGACATGTAGACATCAAGACTTCCCTACGTGGTGCTTACCGTA
AATGGCACAAGCTAACACACCCCCTGGACCAACTTTCAAATCTTGATTTC
TCAACAAAAGAAAGAGTCATGGCGCCGAAAACGGTGGCGCTGAATCTGTC
TCGTCGGGATTTTTGCGAAATGTGTTGTTTCATATATACATCCTCTTCGT
CGTGGCGTAATCGAGCTTTGAAAGATGGTCCAGGGTGTGTGTTATCTTGT
GTCATATACGGTACGTGGGGAGTGTCAAGCACGTCCGCCACGAAACTATC
TACAGCACTCGTGGGCCCATTTCAGCGAGACCTGCTAGGGTTAGTTGCGA
GCATACCGTAGATGACGCAAGATATCACACCACCTGGAGGGTTGATTGGA
TTTGTTGCAGCGGCACCGCCGTGCTGGCTTTTGTTCTATGAGTGTCGTTT
GCGGGTGAAGGGGGTATGCGATTTCGTAGCACCGTTTTTGATGTTTTTGT
ATTTGTACGATTTTCTGTAGCCGCTCGCGGTGTGCTGTTCCGTGGAACTC
CGTACGAACCAGATAGACGTACCGCTTTCCAGGTAAACAAGGCAAGCTCT
ACCGCTAAATTTGTCTGTTGCATCGTCTTCTTTATTTTCCGAATGCATGC
TCCTTTTGTCTTGGATCCTGTTGGAATCAGATCCATGCTTTTGTCTGTTT
GCATCATCGTCTTCTTTTTTCCGAATGCATGCTCCTTTCTTATATCGTGT
CGGAATCAGATCCGTAACTTTGTCTGTAGCGCCATCTTCTCATTTTTTCC
GAATGCGTGCTCCTTTCTTGTATCTTGGTGGAATCAGATCCGCGGGTTTG
AGGAGCTGGGTGGCACGGACGACTTCCACGAAGACACTCTAGCCTTCGTG
TTAAGGTGGGTATCCCGGGATGCAGCTCCCAAGTGCGGTGGTAATCGTAG
CAGTCGGACGTGGTGGGGAGGGGCAGGCATCCAGTCAGGCACGCATCAAC
GCGTGCGCACCACAACTGTTTCCTTGTCCACCCAGACCCCGCCCCTTTCT
CCGTTAGCATTGACTGTTGTTATTTTGGCTGCTGTTGTCGGTGTGGTTGT
TGTTGGTGGTGTTGTTGTTGTTCTTGTTGGTGGTGGTGGTGCTGTTGTTG
TTGCTGTTATTGGTGTGGTTTTTGTTGGTGCTGTTGTTGTTGTGTTCGCA
TAAAAACCGTCCCGGTGTCTCCTCAGCACCCTTCCAGGTATACATTTGCG
AAAAACGCGAACGTCTGCCGCCGTGAAACCGTACATTTCCCAGCCAATAC
GGCGTCCTCAACTTCGAAGGAGAACCACCATCGGACCCCACGAAAGCGTC
GGCCGGGGTGAACTCCATCGCCATGAAGATGCTGGGGAAGGGGGCGGCAC
GGGCGGGAGCCAGGGAAGGCGACGAGGCCGACTACTAGGGGGACTGGAGA
GGAGAGGAAGTGGGCGCATGCGACACGCGCCTTCTCGTTCTATAGTGCCG
GCTGGAGTGTTGACCTCGGCCAATCATGAGACGCGCGCCTTCTGGTTCTT
GGGGTGCCGGCTGGAATATTGGCCTCCACCAATCATGCGACGCGCGCCTT
CTCGTTCTTGCGGGGGTGCCGGCTGGAATGTTGGCCTCCACCAATCAGCG
CCTGAGGATCCTCTCTTGTCACCTGGAGCTGTACCGTGCCAGAGCGGTTG
TTGCAAGGTGTGGTAGGTTCCAGCCATATTGTCGCTATGGTCGCCAACAG
TCGGCGAATGTGGTACATTTCTAAGCGTTTCGGGAGAACGGGGAGGGGGG
ACAACAGCCTTCTCGAGGCGGAAGAGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6834:655..6632+

>mRNA_Ecto-sp13_S_contig6834.17790.1 ID=mRNA_Ecto-sp13_S_contig6834.17790.1|Name=mRNA_Ecto-sp13_S_contig6834.17790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6834:655..6632+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATCTCGGTGGCATGGAAGCTATCGCTCAGCAGGTGGCCGGGAAGGC
CATCCTGGATCACGCGAAGGAAACGGAGCAAAAGCTGGACGCAAAACTGG
CCAAGCTGGACAATATGGATGAGGACGACTTGGACAAGCTGAGGGAGAAG
CGGAAGGCGCAGCTCATTGCCGCTCAGAAGATCAAGCAGGACAACCTCTC
GAACGGACACGGGCGGTACTCCGAGCTGCCTGACCAGCCCGCCTTTTTTG
ACGCGACCAAGAAGAGCAAGTGGATGGCAGTACACTTCTACCGCCCGACA
ACCCAGAGGTGTCAAATCGTCGATGGCCACCTGGACCGCCTCGCCCAGAA
GCACATAGAGACTAGGTTCTGCAAGATCGACGCAGAGAAGTCGCCGTACC
TCACCGAGAAGCTCAACATCTTCGTCATGCCCACCATCCTCCTCATCAAG
GGAGGTCACACAATACACCAGATCCGCGGGTTTGAGGAGCTGGGTGGCAC
GGACGACTTCCACGAAGACACTCTAGCCTTCGTGTTAAGCCAATACGGCG
TCCTCAACTTCGAAGGAGAACCACCATCGGACCCCACGAAAGCGTCGGCC
GGGGTGAACTCCATCGCCATGAAGATGCTGGGGAAGGGGGCGGCACGGGC
GGGAGCCAGGGAAGGCGACGAGGCCGACTACTAG
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