prot_Ecto-sp13_S_contig683.17786.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig683.17786.1
Unique Name	prot_Ecto-sp13_S_contig683.17786.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	769

Homology

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BLAST of mRNA_Ecto-sp13_S_contig683.17786.1 vs. uniprot
Match: A0A6H5JDC5_9PHAE (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDC5_9PHAE)

HSP 1 Score: 1068 bits (2761), Expect = 0.000e+0
Identity = 628/752 (83.51%), Postives = 656/752 (87.23%), Query Frame = 0

Query:   17 MANLSTEEKDPFHEGADAEEEPAKTHVLLAEAENCKDRGNVDFHKGKVLAKHTAGKNFLRDACVLYAEGLRVLGEADARLLAQRAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREQSQGGDDQAPVRSPTLQERETVSLSKRADTVRPSLYLNLAACNLLLREWTPAIACCTHVLDECCGDALREIEAGIGGTGKEARDGVPGATQGDRRAAPAAANDSADTTRAGSATGKSTGDAADAVAAPTSTGAPPDKGQQQQKEGQSGEIYGEHQGTMAPSRGVGREAEPRADPPQEGSGEREREAEKTRCREVAAKCLYRRAAALAGGGDVAAAREDLVRALRLKPRDAAISRELKKAEKQLAENDSRESLRRETEQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGSDTTQQLARPPAPGADHAVVADGIGGDQGGVKVSENQQQRGPRVLKEEEGKGSCSGDEEESNERSQEQPDQPFYTHNGGECRDGLYAWNQSIYEARAHHSSSCRVQVSVKIPPWARASDVRVELHRSRLSVSVVFPHAEDDLPRRTRPHVTHGAGTSATTAXXXXXXXXXXXPASQGGNPGIVGKGETATPVLAGALSRPVQVDECLWTIERPGRVLLYLQKELPVDGDPGFEWWACVMEGXXXVDVLACDAGSDASRYPEHVRRRGAKALWEHQKKSPEERLEEARMRDAYRQMEEEAEQRQRDLDKAMEDPRKAELYRQLKKTMPDTSISIK 768
            MANLSTEEKDP HEG+ AEEEPA TH LLAEAE+CKDRGNVDFHKGKVLAKHTAGKNFLRDACVLYAEGLRVLGEADARLLAQRAQ XXXXXXXXXXXXXXX                       RE+SQG D QA V  PTLQ+RET+SLSKRADTVRPSLYLNLAACNLLL+EWTPAIACCTHVLDECCGDALREIEA IGGTGKEARDGVPG  QGDRR A AAANDS DTTRAGSATG STGDA DA  APT TGAPPDK QQQQKEGQSGEIYGEHQGT APSRG  REAEPRADPPQE SG R+REAEKTRCREVAAKCLYRRAAALAGGGDVAAAREDLVRALRLKPRDAAISRELKKA+KQLAEN++RESLRR+TE+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXDGG   TQQLAR PAPGADHAV+  G GG QGGV+  ENQQQRGPRV KEEEGKGSCSGDEE SNE SQEQP+QPF THNGGECR+GLYAWNQSI EARAHHS+SCRVQVSVKIPPWARASDVRV+LHRSRLSVSVV PHA+ D PR TRP  +HG  TSATTA           PA QG +PG+VG+GETATPVLAGALSRPVQVDECLWTIERPGRVLLYLQKELP DG+PGFEWWACVMEG   +DVLACDAGSDASRYPEH RRRGAKALWEHQ KSP+ERLEE RMRDAYRQMEEEAEQRQRDL+KAM+DPRKAELYRQLKK MPDTSISIK
Sbjct:    1 MANLSTEEKDPIHEGSAAEEEPATTHALLAEAESCKDRGNVDFHKGKVLAKHTAGKNFLRDACVLYAEGLRVLGEADARLLAQRAQQXXXXXXXXXXXXXXXASAADNSDGSRSLTPSSPVPPP-REKSQGNDGQASVLPPTLQDRETISLSKRADTVRPSLYLNLAACNLLLQEWTPAIACCTHVLDECCGDALREIEAEIGGTGKEARDGVPGVAQGDRRTASAAANDSTDTTRAGSATGTSTGDATDAALAPTGTGAPPDKRQQQQKEGQSGEIYGEHQGTTAPSRGADREAEPRADPPQEESGGRDREAEKTRCREVAAKCLYRRAAALAGGGDVAAAREDLVRALRLKPRDAAISRELKKADKQLAENEARESLRRKTEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGGAPTQQLARSPAPGADHAVIGGGKGGHQGGVEAPENQQQRGPRVSKEEEGKGSCSGDEE-SNELSQEQPEQPFSTHNGGECRNGLYAWNQSIDEARAHHSNSCRVQVSVKIPPWARASDVRVDLHRSRLSVSVVIPHADKDRPRGTRPQFSHGTETSATTAGPTASSNAAKDPAPQGVDPGVVGEGETATPVLAGALSRPVQVDECLWTIERPGRVLLYLQKELPADGEPGFEWWACVMEGDPEIDVLACDAGSDASRYPEHARRRGAKALWEHQNKSPKERLEEERMRDAYRQMEEEAEQRQRDLEKAMKDPRKAELYRQLKKIMPDTSISIK 750

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BLAST of mRNA_Ecto-sp13_S_contig683.17786.1 vs. uniprot
Match: A0A6S7ZI66_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZI66_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.600e-17
Identity = 73/267 (27.34%), Postives = 114/267 (42.70%), Query Frame = 0

Query:  507 FYTHNGGECRDGLYAWNQSIYEARAHHSSSCRVQVSVKIPPWARASDVRVELHRSRLSVSVVFPHAEDDLPRRTRPHVTHGAGTSATTAXXXXXXXXXXXPASQGGNPGIVGKGETATPVLAGALSRPVQVDECLWTIERPGRVLLYLQKE-LPVDG----DPGFEWWACVMEGXXXVDVLACDAGSDASRYPEHVRRRGAKALWEHQKKSPEERLEEARMRDAYRQMEEEAEQRQRDLDKAMEDPRKAELYRQLKKTMPDTSISIK 768
            +Y  NG    DG + W Q++ E          V + V+IP   +  DV  E  R  L++ V                                                    GE +       L R + VDEC+W +E PG + L+L KE +P       +PG EWW  V  G   +DV  C+ GSD S+ PE+ +R   K++W+ Q+  PEER +  + R+A  +M    E+R ++ ++AM++P K  L+  +K+  PD  +  K
Sbjct:  164 YYMKNGSIMSDGSFGWGQTVTE----------VHIFVRIPRSTKGKDVTCEFKRQSLTLKV---------------------------------------------------SGEGSFRFQRRQLYRCITVDECIWELEAPGCLHLFLFKENIPSSNADANNPGQEWWKSVFAGDEQIDVNNCNIGSDMSQLPENAKREWEKSIWKQQQIPPEERKKIEKEREAQAEMARMKEERIQNNEEAMKNPNKKALFEMMKEKFPDIPVEFK 369

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig683.17786.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig683.17786.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JDC5_9PHAE	0.000e+0	83.51	CS domain-containing protein n=2 Tax=Ectocarpus Ta...	[more]
A0A6S7ZI66_9STRA	1.600e-17	27.34	Hypothetical protein n=1 Tax=Aplanochytrium stocch...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 392..412
None	No IPR available	COILS	Coil	Coil	coord: 719..746
None	No IPR available	COILS	Coil	Coil	coord: 94..118
None	No IPR available	PANTHER	PTHR12356:SF3	NUCLEAR MIGRATION PROTEIN NUDC	coord: 620..682
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 176..209 e-value: 37.0 score: 9.9 coord: 339..372 e-value: 0.068 score: 22.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 330..398 e-value: 3.6E-8 score: 35.4
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 167..390
IPR007052	CS domain	PFAM	PF04969	CS	coord: 538..656 e-value: 7.9E-4 score: 20.4
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 515..673 score: 9.716
IPR037898	NudC family	PANTHER	PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	coord: 620..682
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 622..694

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig683	contig	Ecto-sp13_S_contig683:10562..14351 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig683.17786.1	mRNA_Ecto-sp13_S_contig683.17786.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig683 9832..14351 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig683.17786.1 ID=prot_Ecto-sp13_S_contig683.17786.1|Name=mRNA_Ecto-sp13_S_contig683.17786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=769bp
MNDDLPSVKPRTFSEIMANLSTEEKDPFHEGADAEEEPAKTHVLLAEAEN
CKDRGNVDFHKGKVLAKHTAGKNFLRDACVLYAEGLRVLGEADARLLAQR
AQQQQKQQQQQREEGNSNRASAANTSDGSRSPTPSSPVPPPREQSQGGDD
QAPVRSPTLQERETVSLSKRADTVRPSLYLNLAACNLLLREWTPAIACCT
HVLDECCGDALREIEAGIGGTGKEARDGVPGATQGDRRAAPAAANDSADT
TRAGSATGKSTGDAADAVAAPTSTGAPPDKGQQQQKEGQSGEIYGEHQGT
MAPSRGVGREAEPRADPPQEGSGEREREAEKTRCREVAAKCLYRRAAALA
GGGDVAAAREDLVRALRLKPRDAAISRELKKAEKQLAENDSRESLRRETE
QGRRRRQQQQRRQADSTSAVTKTDNITSTTADGGSDTTQQLARPPAPGAD
HAVVADGIGGDQGGVKVSENQQQRGPRVLKEEEGKGSCSGDEEESNERSQ
EQPDQPFYTHNGGECRDGLYAWNQSIYEARAHHSSSCRVQVSVKIPPWAR
ASDVRVELHRSRLSVSVVFPHAEDDLPRRTRPHVTHGAGTSATTAAPTAS
SDAAEDPASQGGNPGIVGKGETATPVLAGALSRPVQVDECLWTIERPGRV
LLYLQKELPVDGDPGFEWWACVMEGDPGVDVLACDAGSDASRYPEHVRRR
GAKALWEHQKKSPEERLEEARMRDAYRQMEEEAEQRQRDLDKAMEDPRKA
ELYRQLKKTMPDTSISIK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom_sf
IPR007052	CS_dom
IPR037898	NudC_fam
IPR008978	HSP20-like_chaperone