prot_Ecto-sp13_S_contig6828.17779.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6828.17779.1
Unique Nameprot_Ecto-sp13_S_contig6828.17779.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length293
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6828.17779.1 vs. uniprot
Match: D8LS03_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS03_ECTSI)

HSP 1 Score: 474 bits (1221), Expect = 5.140e-164
Identity = 256/299 (85.62%), Postives = 263/299 (87.96%), Query Frame = 0 
Query:    1 MGAVPIDRKIVARPTDLFVCRQETDAASSIYNFFCSTFKEGYEESISLARLRQLGASFNFTRAPITAAPFTSAASDGLANQGPGGGRRFEGPTKPGAQRILDAISMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELMVHEALRRVLLLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAXXXXXXXXXTG------VLKGRVGCGKQGLQKQYAGGVVPVWPKIPGGWAEPRHCHTAPLVVWATGPSRARVRAKGEFVDHCSAAMLGSSHFPAGAELMLVDG 293
            MGAVPIDRKIVA+PTDLFVCR                FKEGYEE+ISLARLRQLGASF+FTRAPITAA FTSA S GLANQGPGGGRRFEGP KPGAQRILDA+SMSSLWNHKMRGGVGPSAKGETVVSASIHDDAEL VHEALR    LLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAXXXXXXXXX        + KGRVGCGKQGLQKQ+ GGVVPVWPKIPGGWAEPRHCHTAPLVVWATGPSRARVRAKGEFVDHCSAAMLGSSHFP GAELML+DG
Sbjct:    1 MGAVPIDRKIVAKPTDLFVCR----------------FKEGYEENISLARLRQLGASFSFTRAPITAAAFTSAVSGGLANQGPGGGRRFEGPVKPGAQRILDAMSMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELTVHEALR----LLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAXXXXXXXXXXXXXXXXXLTKGRVGCGKQGLQKQHPGGVVPVWPKIPGGWAEPRHCHTAPLVVWATGPSRARVRAKGEFVDHCSAAMLGSSHFPPGAELMLMDG 279
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BLAST of mRNA_Ecto-sp13_S_contig6828.17779.1 vs. uniprot
Match: A0A6H5KX53_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX53_9PHAE)

HSP 1 Score: 483 bits (1244), Expect = 4.660e-155
Identity = 258/299 (86.29%), Postives = 268/299 (89.63%), Query Frame = 0 
Query:    1 MGAVPIDRKIVARPTDLFVCRQETDAASSIYNFFCSTFKEGYEESISLARLRQLGASFNFTRAPITAAPFTSAASDGLANQGPGGGRRFEGPTKPGAQRILDAISMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELMVHEALRRVLLLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAXXXXXXXXXTG------VLKGRVGCGKQGLQKQYAGGVVPVWPKIPGGWAEPRHCHTAPLVVWATGPSRARVRAKGEFVDHCSAAMLGSSHFPAGAELMLVDG 293
            MGAVPIDRKIVARPTDLFV                  FKEGYEE+ISLARLRQLGASF+FTRAPITAAPFTSAASDGLANQGPGGGRRFEGP KPGAQ+ILDA+SMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELMVHEALR+VLLLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLA+LA+EDAA XXXXXXXXX        V KG+VGCGKQGLQKQ+AGGVVPVWPKIPGGWAEPRHCH APLVVWATGPSRARVRAKGEF+DHCSAAMLGSSHFP GAELMLVDG
Sbjct: 1194 MGAVPIDRKIVARPTDLFV------------------FKEGYEENISLARLRQLGASFSFTRAPITAAPFTSAASDGLANQGPGGGRRFEGPAKPGAQQILDAMSMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELMVHEALRQVLLLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLARLADEDAAXXXXXXXXXXXXXXXXXXVTKGKVGCGKQGLQKQHAGGVVPVWPKIPGGWAEPRHCHIAPLVVWATGPSRARVRAKGEFMDHCSAAMLGSSHFPRGAELMLVDG 1474
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6828.17779.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS03_ECTSI5.140e-16485.62PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KX53_9PHAE4.660e-15586.29PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6828contigEcto-sp13_S_contig6828:3..4179 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6828.17779.1mRNA_Ecto-sp13_S_contig6828.17779.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6828 3..4179 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6828.17779.1 ID=prot_Ecto-sp13_S_contig6828.17779.1|Name=mRNA_Ecto-sp13_S_contig6828.17779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
MGAVPIDRKIVARPTDLFVCRQETDAASSIYNFFCSTFKEGYEESISLAR
LRQLGASFNFTRAPITAAPFTSAASDGLANQGPGGGRRFEGPTKPGAQRI
LDAISMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELMVHEALRRVLLL
LKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAAAAS
GSGNGTGVLKGRVGCGKQGLQKQYAGGVVPVWPKIPGGWAEPRHCHTAPL
VVWATGPSRARVRAKGEFVDHCSAAMLGSSHFPAGAELMLVDG
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