mRNA_Ecto-sp13_S_contig6828.17779.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6828.17779.1
Unique NamemRNA_Ecto-sp13_S_contig6828.17779.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6828.17779.1 vs. uniprot
Match: D8LS03_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS03_ECTSI)

HSP 1 Score: 474 bits (1221), Expect = 5.140e-164
Identity = 256/299 (85.62%), Postives = 263/299 (87.96%), Query Frame = 1 
Query:    1 MGAVPIDRKIVARPTDLFVCRQETDAASSIYNFFCSTFKEGYEESISLARLRQLGASFNFTRAPITAAPFTSAASDGLANQGPGGGRRFEGPTKPGAQRILDAISMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELMVHEALRRVLLLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAXXXXXXXXXTG------VLKGRVGCGKQGLQKQYAGGVVPVWPKIPGGWAEPRHCHTAPLVVWATGPSRARVRAKGEFVDHCSAAMLGSSHFPAGAELMLVDG 879
            MGAVPIDRKIVA+PTDLFVCR                FKEGYEE+ISLARLRQLGASF+FTRAPITAA FTSA S GLANQGPGGGRRFEGP KPGAQRILDA+SMSSLWNHKMRGGVGPSAKGETVVSASIHDDAEL VHEALR    LLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAXXXXXXXXX        + KGRVGCGKQGLQKQ+ GGVVPVWPKIPGGWAEPRHCHTAPLVVWATGPSRARVRAKGEFVDHCSAAMLGSSHFP GAELML+DG
Sbjct:    1 MGAVPIDRKIVAKPTDLFVCR----------------FKEGYEENISLARLRQLGASFSFTRAPITAAAFTSAVSGGLANQGPGGGRRFEGPVKPGAQRILDAMSMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELTVHEALR----LLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAXXXXXXXXXXXXXXXXXLTKGRVGCGKQGLQKQHPGGVVPVWPKIPGGWAEPRHCHTAPLVVWATGPSRARVRAKGEFVDHCSAAMLGSSHFPPGAELMLMDG 279
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BLAST of mRNA_Ecto-sp13_S_contig6828.17779.1 vs. uniprot
Match: A0A6H5KX53_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX53_9PHAE)

HSP 1 Score: 483 bits (1244), Expect = 4.660e-155
Identity = 258/299 (86.29%), Postives = 268/299 (89.63%), Query Frame = 1 
Query:    1 MGAVPIDRKIVARPTDLFVCRQETDAASSIYNFFCSTFKEGYEESISLARLRQLGASFNFTRAPITAAPFTSAASDGLANQGPGGGRRFEGPTKPGAQRILDAISMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELMVHEALRRVLLLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAXXXXXXXXXTG------VLKGRVGCGKQGLQKQYAGGVVPVWPKIPGGWAEPRHCHTAPLVVWATGPSRARVRAKGEFVDHCSAAMLGSSHFPAGAELMLVDG 879
            MGAVPIDRKIVARPTDLFV                  FKEGYEE+ISLARLRQLGASF+FTRAPITAAPFTSAASDGLANQGPGGGRRFEGP KPGAQ+ILDA+SMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELMVHEALR+VLLLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLA+LA+EDAA XXXXXXXXX        V KG+VGCGKQGLQKQ+AGGVVPVWPKIPGGWAEPRHCH APLVVWATGPSRARVRAKGEF+DHCSAAMLGSSHFP GAELMLVDG
Sbjct: 1194 MGAVPIDRKIVARPTDLFV------------------FKEGYEENISLARLRQLGASFSFTRAPITAAPFTSAASDGLANQGPGGGRRFEGPAKPGAQQILDAMSMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELMVHEALRQVLLLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLARLADEDAAXXXXXXXXXXXXXXXXXXVTKGKVGCGKQGLQKQHAGGVVPVWPKIPGGWAEPRHCHIAPLVVWATGPSRARVRAKGEFMDHCSAAMLGSSHFPRGAELMLVDG 1474
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6828.17779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS03_ECTSI5.140e-16485.62PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KX53_9PHAE4.660e-15586.29PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6828contigEcto-sp13_S_contig6828:3..4179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size879
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionPHD-type zinc finger protein
Ec32 orthologEc-08_001580.1
Cds size879
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6828.17779.1prot_Ecto-sp13_S_contig6828.17779.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6828 3..4179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463938.2756405-CDS-Ecto-sp13_S_contig6828:2..931681463938.2756405-CDS-Ecto-sp13_S_contig6828:2..93Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6828 3..93 -
1681463938.2853258-CDS-Ecto-sp13_S_contig6828:474..5871681463938.2853258-CDS-Ecto-sp13_S_contig6828:474..587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6828 475..587 -
1681463938.2947967-CDS-Ecto-sp13_S_contig6828:1579..18081681463938.2947967-CDS-Ecto-sp13_S_contig6828:1579..1808Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6828 1580..1808 -
1681463938.3048296-CDS-Ecto-sp13_S_contig6828:2238..23181681463938.3048296-CDS-Ecto-sp13_S_contig6828:2238..2318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6828 2239..2318 -
1681463938.3292243-CDS-Ecto-sp13_S_contig6828:3122..33781681463938.3292243-CDS-Ecto-sp13_S_contig6828:3122..3378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6828 3123..3378 -
1681463938.3501031-CDS-Ecto-sp13_S_contig6828:4069..41791681463938.3501031-CDS-Ecto-sp13_S_contig6828:4069..4179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6828 4070..4179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6828.17779.1

>prot_Ecto-sp13_S_contig6828.17779.1 ID=prot_Ecto-sp13_S_contig6828.17779.1|Name=mRNA_Ecto-sp13_S_contig6828.17779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
MGAVPIDRKIVARPTDLFVCRQETDAASSIYNFFCSTFKEGYEESISLAR
LRQLGASFNFTRAPITAAPFTSAASDGLANQGPGGGRRFEGPTKPGAQRI
LDAISMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELMVHEALRRVLLL
LKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAAAAS
GSGNGTGVLKGRVGCGKQGLQKQYAGGVVPVWPKIPGGWAEPRHCHTAPL
VVWATGPSRARVRAKGEFVDHCSAAMLGSSHFPAGAELMLVDG
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mRNA from alignment at Ecto-sp13_S_contig6828:3..4179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6828.17779.1 ID=mRNA_Ecto-sp13_S_contig6828.17779.1|Name=mRNA_Ecto-sp13_S_contig6828.17779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6828:3..4179- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGCGGTGCCGATCGACCGGAAGATCGTGGCCAGGCCGACCGATTT
GTTCGTTTGCAGGCAAGAGACCGATGCCGCTTCTTCTATTTATAATTTTT
TTTGTAGCACGTTGTGATGGGGATGGTCGGGCTTAATCGCGCCGCGGCCC
AACCACGAGCTGTGTGCGCCACGTGCGTGTGTGATGCGGAACGTTGTCTG
TGAGGTCATCCCATGATCGATTCCCTCGGGAGGGAGGGTTGCTTCTTCCT
ACTGCTGGGGGTGATTGAGCTTTTGGCTATATCTAGCTTAGCTCTCCCTT
CCACCTGCGGTTAACGGTAATAACTGCGCTGTGCTTGCTGAAGTTCGAAA
GGAGGTCCGTTGTCTTTCTCCAAAGGTTCTAGATATTCCTGTAGAAGCAC
ACGGAAATCATGGCGCTGTTGTTGTAGCCCGACCCTCATGGCAGCCGTTG
CCGATAACGTGCCCTTGACCTCGTAGACGTCTCGTGTGTGTGATGTACTG
ATGACGAATTTGAGCTCTCCGCGTGATAATGATGTCGTCGTTGCCACCGT
TATTGCTGACCGCTGTTGCTGCTGCTGATGATGATGATGATGATGATGTC
GTGTTGTTCTCGACGATGATGCCTTGTTGTTGGTGTTGATGCTGCTATTG
TCGTTGACGGCCATGTATGTTTTTGTTGTCATTGTCGTAGTGAGCGTTAT
TCGTGTAATCCTGTCGTTGGACTGATGTTATCGTCGTTGCTATTGAAACC
ATCTTCCTTCGTTGATGTTGCTGTCGCCTTCCTCTCTCTGCGTGCAAAAA
GGTTCAAAGAGGGCTACGAGGAAAGCATCAGCCTGGCCAGACTCCGGCAG
CTGGGAGCTTCCTTCAACTTCACGCGAGCACCCATCACCGCTGCCCCTTT
CACAAGTGCCGCCTCCGATGGCCTCGCCAATCAAGGGCCGGGTGGCGGGA
GGAGGTTCGAGGGGCCGACGAAGCCGGGCGCACAGCGAATCCTCGACGCG
ATCAGCATGTCCAGCCTGTGGAACCACAAGATGAGGGGGGGCGTGGGGCC
GTCAGCAGTGAGTTTGTGTGATTGTAATTTTTTTTGTTCTTGTCCTGTTT
TCTTGTTTTTTGTTGCAGAACAATTGGCACATGTATCTCTGGTTTAATCT
GCAGATCGAAGTTTACTTTTGTTTTTTTTCGTACGAAAACATATGGTACA
AAATTCATCTGTTCTCACGGATCAGAGAGTCCAGGGTAGATAAGCAATTG
GATCCATGAATGCTGTGTAACCTACCTGAACAAGAGGTCCATAAAAATTC
AAAAAATCGCCATGAGAGTTGAAAGCATACGGATGTGGATACGCGCAGAA
TGTTTTACGGCGTGGCCCCCGAACGTTAGCTCCTCAGCGTAAATAGAAGT
CAGATGTCGTGTGATCGGTTTCTAGACACCATCAGCAAAGGATATGCATA
GGTCAATGAAAAGACAGTAAGAATTTACATGTCATACGTTCCAGACAAGG
TATGTGTCTTTGTTCAGGTTGATGAACAGACGGGAAGATATAACTAGACC
AGATGTGCGTTAATTTTTTCATGTTTTTTTTTTTTTCGTTTTTGATTCTT
GACGCTGCCCACCTGGGCGGGTACTCGATCGCTCAAAGGCAACACATAAG
GCACACATTTTCCCGCTATTTCTAAAGAAAAATAACGAAAGCATTTGTGT
ATGTTTTAGTAGGTCACCGCTCCCGGGTTTGAGTAACCCTCATATGGAAA
CCTCAAAACGGCGTTGCGTTGCTGCCTCTGGCTGTCGGTCGATCTTTCTC
ATTTCTTCGTCCTTCATTTCGGCCCTCGCTTTTTTCTCTCTTTTTTTGTT
CTCGGATCCAGAAAGGGGAGACGGTAGTTTCGGCGAGCATTCACGACGAC
GCTGAGCTGATGGTACACGAAGCTTTGAGGCGAGTGCTGCTGTAACTGCA
GCTGTGGCGAATGGGTTCCTCACTAGTAGGATGGTATTGCCGGCGGTTGA
AAAGTGCAACTGCTCGGTAGGATAGCGCCACTGCTGAAACCGCGCGACAC
GGATGGAATACACAACGTTCAAGTTTGTTCAGTAGTGCCGGGCGACCGGT
ATATTGTCTGTGAAGTCGCGCGACACGGATTTATCCTGTCTCCTTGTGTG
AGTAGTGCTGGGTGCCCGGTATTGTGCGGGTGAAGCCGCTTGACATGGAT
GGGAATATTCATGGAATATTCATGCTGTCTCCTTGTCTGAGAAGTGCAGG
GGTGGGTGCCTGGTACACCCCGCGATAGCATCCACTCAGACAATTTCACG
AAACGTGTCACCAACAGCATCAACGACAATCACAACAACAACAACAACAA
CAACAACAACAACAACAACAGACTGCTGAAGAGCATGAAGGAACAAGGGC
GGGAGATCGGCGTTAGCTTTTGGGAGTCCCCCGAGCGGAAGTGCCTCAAC
GAGTGCACGCTGCCCCTTCCGCCGTCCGTCCTGGCGCAACTTGCCGAGGA
AGACGCTGCCGCCGCCGCCGCTAGCGGTAGTGGAAACGGCACGGGCGTGT
TGAAGGGGAGGGTGGGCTGCGGAAAGCAAGGCTTGCAGAAACAGTACGCG
GTGAGAGGAGCCATTGTTTGTTTTTCGGTCTGCACGAAAGGGGGCACACA
ACTGAGATAGCCCACCCCCCCCCCCCCCCCTTCTCGGCCCATGTTTTCGT
GTGTTCTTAGTCCAGTTTATTGTCGCGCCACCCATGTATTTCATGCTCTT
AGTCCAGATTGGTTATGTAGGAATTAGTGTTGGAGGCCCCGTCCGGCATC
AAAATTCGGTGACCCCCCATCTAGTCACACCAGGGAGTGGCAAACGCATC
TTCTGCATGACCCCACTGATCAAAGTATATGAGATTAGCGTCCCCCCCGA
CCAGATTTTGCCCTGAATCCAGGTTGGGGCTGTTGTTTGTTCATACCCCC
GGCGTGGAGTGAGGCGTTTGTGCGAGGGGTTCGGATAGGGGCAGGGGTAC
AGTCGTGGCTCCGATGTTCAAGAGGGTACCTTATAAAAGGAGGCTCCGGT
ATAAGCGGGTGTCGAGCCGTCGTCACACCACCCTCTTTTAACGGAGCCAC
GACTGTAGGTAGGGAGGATGTTGCGGCGCGTGGTCCGTCGTTGGATGGTA
CTTGACATCTTGACTTGTTGACATGTTTAACGGCCAGGGTGAGGTAGGTG
TTGGTGGAGCCAGCCGTAGGTCTCGTATCGTTGATTGTTTCCTCGCCTGT
TGTGTGTATGTGTGTGTATTTTTTACAAGCATCGACCGCGCTACCCGGCT
GACCAATGAAAAGACGTCAGTTTTAGTGCGGTTGAAAACACAAAAAAACT
CATTGTGAATGCCATTAACTGGAACCCGGTGTGTGTTTTGGTATGTACCC
GCTTCCAACTATTTTTTTTCATGGCTATAATGGGACATTTTTCACCCAAC
TACACGATCAAGGAGTACAATACAACGTCGCGTAGTCGGCGGCATCATCA
TCTCAGCCCTTCGCTACACCCTTACAGAGGAGCAGGGCCCGTTCGAACGC
TATTGGTGAGCTCCGCGCCATCGATTGTTTTGTCGTGGGCAGGGAGGCGT
GGTTCCAGTCTGGCCAAAGATACCCGGAGGGTGGGCGGAGCCAAGGCACT
GCCACACAGCCCCTCTCGTCGTCTGGGCCACCGGCCCTTCGAGGGCTCGT
GTCAGGTTGGGAATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCAC
TGCTGTGGCTGTTGCGGCTGTTGTTGGTGCTGTTGCGGCTGTCGTTGATG
TTGCTGTTGCTGCTGCTGTTGCTGCTGTTGTTGTTAGCTTATCGTTCCTG
TTGTTGCGGCCGTGGTCTTGACATGCAAAAGCTGTTCCGAAAATACTGTT
CTGTTCCTTCTGACATCCTTACTGGTACAACTTACACGGATGGAAGCCTT
CCGCAGTCACAGGCCAACTACCCCACACAGTCAGTACGTACGGAAATCAA
TGGACAAGACAAGAAACGCGACATAATCTATGCATTCTTCGGGCTTTTGT
ATGAGGTAAAAATCTTGTTTTGCTATCATGCTGCAGGGCGAAGGGAGAGT
TCGTGGATCACTGCTCGGCCGCCATGCTAGGGTCCTCGCATTTCCCTGCA
GGGGCAGAGCTGATGCTCGTGGACGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6828:3..4179-

>mRNA_Ecto-sp13_S_contig6828.17779.1 ID=mRNA_Ecto-sp13_S_contig6828.17779.1|Name=mRNA_Ecto-sp13_S_contig6828.17779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6828:3..4179- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGCGGTGCCGATCGACCGGAAGATCGTGGCCAGGCCGACCGATTT
GTTCGTTTGCAGGCAAGAGACCGATGCCGCTTCTTCTATTTATAATTTTT
TTTGTAGCACGTTCAAAGAGGGCTACGAGGAAAGCATCAGCCTGGCCAGA
CTCCGGCAGCTGGGAGCTTCCTTCAACTTCACGCGAGCACCCATCACCGC
TGCCCCTTTCACAAGTGCCGCCTCCGATGGCCTCGCCAATCAAGGGCCGG
GTGGCGGGAGGAGGTTCGAGGGGCCGACGAAGCCGGGCGCACAGCGAATC
CTCGACGCGATCAGCATGTCCAGCCTGTGGAACCACAAGATGAGGGGGGG
CGTGGGGCCGTCAGCAAAAGGGGAGACGGTAGTTTCGGCGAGCATTCACG
ACGACGCTGAGCTGATGGTACACGAAGCTTTGAGGCGAGTGCTGCTACTG
CTGAAGAGCATGAAGGAACAAGGGCGGGAGATCGGCGTTAGCTTTTGGGA
GTCCCCCGAGCGGAAGTGCCTCAACGAGTGCACGCTGCCCCTTCCGCCGT
CCGTCCTGGCGCAACTTGCCGAGGAAGACGCTGCCGCCGCCGCCGCTAGC
GGTAGTGGAAACGGCACGGGCGTGTTGAAGGGGAGGGTGGGCTGCGGAAA
GCAAGGCTTGCAGAAACAGTACGCGGGAGGCGTGGTTCCAGTCTGGCCAA
AGATACCCGGAGGGTGGGCGGAGCCAAGGCACTGCCACACAGCCCCTCTC
GTCGTCTGGGCCACCGGCCCTTCGAGGGCTCGTGTCAGGGCGAAGGGAGA
GTTCGTGGATCACTGCTCGGCCGCCATGCTAGGGTCCTCGCATTTCCCTG
CAGGGGCAGAGCTGATGCTCGTGGACGGC
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