mRNA_Ecto-sp13_S_contig12094.1779.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12094.1779.1
Unique NamemRNA_Ecto-sp13_S_contig12094.1779.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12094.1779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12094contigEcto-sp13_S_contig12094:1567..2129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size563
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462642.4524882-UTR-Ecto-sp13_S_contig12094:1566..17301681462642.4524882-UTR-Ecto-sp13_S_contig12094:1566..1730Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12094 1567..1730 +
1681462642.4701777-UTR-Ecto-sp13_S_contig12094:2072..21291681462642.4701777-UTR-Ecto-sp13_S_contig12094:2072..2129Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12094 2073..2129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462642.4619622-CDS-Ecto-sp13_S_contig12094:1730..20721681462642.4619622-CDS-Ecto-sp13_S_contig12094:1730..2072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12094 1731..2072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12094.1779.1prot_Ecto-sp13_S_contig12094.1779.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12094 1731..2072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12094.1779.1

>prot_Ecto-sp13_S_contig12094.1779.1 ID=prot_Ecto-sp13_S_contig12094.1779.1|Name=mRNA_Ecto-sp13_S_contig12094.1779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MKSRVGFVLRVSPTPLGQDVTLECLSDINFARVYLSRPCFPFSSCWSVAM
HKGNSLAIVVSELLRTSLGFTALFRNSTNDLQPYFNDALFSAEIVPRKKH
GGPPKRPRPPATH*
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mRNA from alignment at Ecto-sp13_S_contig12094:1567..2129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12094.1779.1 ID=mRNA_Ecto-sp13_S_contig12094.1779.1|Name=mRNA_Ecto-sp13_S_contig12094.1779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=563bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12094:1567..2129+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGAACGCTGAAGGTGAGGGACTTGGTATTGTAAGCCTTGCGTGACTCC
ATTTCAATTGCTATTGGTCTCAGTGACGTCAGGTGTGGTTTCTAAGCGAC
GCCAGATGTCGACTCTGTCCGATTTCTCTTTCCGCGTGATGAAAGAGGTT
TGCGAGCACGTACAATGAAAAGTAGGGTAGGTTTCGTTTTGAGGGTCTCG
CCAACACCTCTCGGACAGGACGTGACGCTCGAGTGCTTAAGTGATATAAA
CTTTGCCAGGGTGTACCTTTCGCGTCCATGCTTTCCGTTCTCTAGCTGCT
GGTCTGTGGCCATGCACAAAGGGAACAGTTTGGCCATCGTAGTTTCTGAG
CTTCTTCGGACCAGTCTAGGCTTTACAGCCCTGTTCCGCAACAGCACGAA
TGATTTGCAACCATACTTCAATGACGCGTTGTTTTCGGCCGAAATTGTAC
CCCGCAAGAAGCATGGAGGTCCACCGAAACGTCCACGGCCTCCAGCTACG
CATTGAAATACAGCAGTAGAATTGTTTCGGCCGCGAGAGCAAGGATGTTC
TTCGAGTGGTTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12094:1567..2129+

>mRNA_Ecto-sp13_S_contig12094.1779.1 ID=mRNA_Ecto-sp13_S_contig12094.1779.1|Name=mRNA_Ecto-sp13_S_contig12094.1779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12094:1567..2129+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAGTAGGGTAGGTTTCGTTTTGAGGGTCTCGCCAACACCTCTCGG
ACAGGACGTGACGCTCGAGTGCTTAAGTGATATAAACTTTGCCAGGGTGT
ACCTTTCGCGTCCATGCTTTCCGTTCTCTAGCTGCTGGTCTGTGGCCATG
CACAAAGGGAACAGTTTGGCCATCGTAGTTTCTGAGCTTCTTCGGACCAG
TCTAGGCTTTACAGCCCTGTTCCGCAACAGCACGAATGATTTGCAACCAT
ACTTCAATGACGCGTTGTTTTCGGCCGAAATTGTACCCCGCAAGAAGCAT
GGAGGTCCACCGAAACGTCCACGGCCTCCAGCTACGCATTGA
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