mRNA_Ecto-sp13_S_contig6828.17780.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6828.17780.1
Unique NamemRNA_Ecto-sp13_S_contig6828.17780.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6828.17780.1 vs. uniprot
Match: A0A6H5KX53_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX53_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.100e-27
Identity = 77/92 (83.70%), Postives = 78/92 (84.78%), Query Frame = -2 
Query:    6 VAPEVLGAEDEAPPLPPAGGSGSLSGTEEAGTAALEGAXXXXXXXXX---GLEGGGVPASGDGPAGDSGKEEQESDGDDVSALRLQSANEAM 272
            VAPEVLG EDE PPLPPA GSGSLSGTEEAGTAA EGA   XXXXXX   GLE GGVPASGDGPAGDSGKEEQESD DDVSALRLQS  +AM
Sbjct:  616 VAPEVLGTEDEGPPLPPAVGSGSLSGTEEAGTAAPEGAVAVXXXXXXXXXGLEDGGVPASGDGPAGDSGKEEQESDRDDVSALRLQSETDAM 707
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6828.17780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX53_9PHAE1.100e-2783.70PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6828contigEcto-sp13_S_contig6828:5606..6028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size423
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_001570.1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463938.192237-CDS-Ecto-sp13_S_contig6828:5605..60281681463938.192237-CDS-Ecto-sp13_S_contig6828:5605..6028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6828 5606..6028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6828.17780.1prot_Ecto-sp13_S_contig6828.17780.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6828 5606..6028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6828.17780.1

>prot_Ecto-sp13_S_contig6828.17780.1 ID=prot_Ecto-sp13_S_contig6828.17780.1|Name=mRNA_Ecto-sp13_S_contig6828.17780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MSIASFALCSLSADTSSPSLSCSSLPESPAGPSPEAGTPPPSSPAAAAAA
AAPAPSSAAVPASSVPDNDPLPPAGGKGGASSSAPSTSGATSSSTPALPA
SSRLSRAPPSASSYAAPPPPPPPAAASTRPSAAADPGAAAA
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mRNA from alignment at Ecto-sp13_S_contig6828:5606..6028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6828.17780.1 ID=mRNA_Ecto-sp13_S_contig6828.17780.1|Name=mRNA_Ecto-sp13_S_contig6828.17780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6828:5606..6028+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCATCGCCTCGTTCGCGCTCTGCAGCCTCAGCGCGGACACATCGTC
CCCGTCGCTCTCCTGCTCCTCCTTGCCGGAGTCTCCGGCCGGGCCATCGC
CGGAAGCGGGGACGCCGCCACCCTCTAGCCCGGCCGCCGCCGCCGCCGCC
GCCGCCCCCGCCCCCTCCAGCGCCGCCGTTCCGGCCTCCTCCGTCCCCGA
CAACGACCCGCTACCCCCAGCCGGCGGCAAGGGTGGCGCTTCGTCTTCTG
CGCCAAGCACCTCCGGCGCCACTTCCTCTTCGACGCCTGCACTCCCTGCC
TCCTCCCGGCTATCTCGCGCGCCTCCTTCCGCTTCTTCGTACGCCGCCCC
GCCGCCGCCGCCGCCGCCCGCGGCGGCGTCAACGCGTCCGTCTGCGGCCG
CTGACCCTGGTGCCGCCGCCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6828:5606..6028+

>mRNA_Ecto-sp13_S_contig6828.17780.1 ID=mRNA_Ecto-sp13_S_contig6828.17780.1|Name=mRNA_Ecto-sp13_S_contig6828.17780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6828:5606..6028+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCATCGCCTCGTTCGCGCTCTGCAGCCTCAGCGCGGACACATCGTC
CCCGTCGCTCTCCTGCTCCTCCTTGCCGGAGTCTCCGGCCGGGCCATCGC
CGGAAGCGGGGACGCCGCCACCCTCTAGCCCGGCCGCCGCCGCCGCCGCC
GCCGCCCCCGCCCCCTCCAGCGCCGCCGTTCCGGCCTCCTCCGTCCCCGA
CAACGACCCGCTACCCCCAGCCGGCGGCAAGGGTGGCGCTTCGTCTTCTG
CGCCAAGCACCTCCGGCGCCACTTCCTCTTCGACGCCTGCACTCCCTGCC
TCCTCCCGGCTATCTCGCGCGCCTCCTTCCGCTTCTTCGTACGCCGCCCC
GCCGCCGCCGCCGCCGCCCGCGGCGGCGTCAACGCGTCCGTCTGCGGCCG
CTGACCCTGGTGCCGCCGCCGCC
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