mRNA_Ecto-sp13_S_contig6827.17778.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6827.17778.1
Unique NamemRNA_Ecto-sp13_S_contig6827.17778.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6827.17778.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 5.000e-54
Identity = 93/105 (88.57%), Postives = 99/105 (94.29%), Query Frame = 1 
Query:    1 HGRSPALCALGRQGTPRASLEKSIDVLLAGAPPSDSTTLVNNNADAAQGHLPIPAASPALSRRLGLMFQAPDGGGGKGGRGNSPLCWVLHAARGGIEAFNLAYEG 315
            HGRSPALCALGR+G PRASLEKSIDVLLAGAPPS ST LVNN ADAA+G+LP+PAASPALS RL LMFQAP+GGGGKGGRGNSPLCWVLHAARGGIEAFNLAY+G
Sbjct:  426 HGRSPALCALGRKGNPRASLEKSIDVLLAGAPPSGSTALVNNGADAAEGNLPVPAASPALSHRLRLMFQAPEGGGGKGGRGNSPLCWVLHAARGGIEAFNLAYDG 530
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BLAST of mRNA_Ecto-sp13_S_contig6827.17778.1 vs. uniprot
Match: A0A6H5K219_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K219_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 4.350e-50
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 HGRSPALCALGRQGTPRASLEKSIDVLLAGAPPSDSTTLVNNNADAAQGHLPIPAASPALSRRLGLMFQAPDGGGGKGGRGNSPLCWVLHAARGGIE 291
            HGRSPALCALGR+GTPRASLEKSI VLLAGAPPS STTLVNN+ADAA+GHLPIPAAS AL RRL L+FQAP+GGGGKGGRGNSPLCWVLHAARGGIE
Sbjct:  430 HGRSPALCALGRKGTPRASLEKSIRVLLAGAPPSGSTTLVNNDADAAEGHLPIPAASTALCRRLRLIFQAPEGGGGKGGRGNSPLCWVLHAARGGIE 526
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6827.17778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMR2_ECTSI5.000e-5488.57Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K219_9PHAE4.350e-5089.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6827contigEcto-sp13_S_contig6827:6719..7942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score194.1
Seed ortholog evalue3.2e-47
Seed eggNOG ortholog2880.D7FMR2
Model size316
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.store-operated calcium channel activity
EggNOG OGsKOG3609@1,KOG3609@2759
Ec32 ortholog descriptionTransient receptor potential channel, canonical
Ec32 orthologEc-23_001280.1
Cds size315
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463938.1506412-CDS-Ecto-sp13_S_contig6827:6718..70091681463938.1506412-CDS-Ecto-sp13_S_contig6827:6718..7009Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6827 6719..7009 +
1681463938.1614609-CDS-Ecto-sp13_S_contig6827:7918..79421681463938.1614609-CDS-Ecto-sp13_S_contig6827:7918..7942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6827 7919..7942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6827.17778.1prot_Ecto-sp13_S_contig6827.17778.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6827 6719..7942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6827.17778.1

>prot_Ecto-sp13_S_contig6827.17778.1 ID=prot_Ecto-sp13_S_contig6827.17778.1|Name=mRNA_Ecto-sp13_S_contig6827.17778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
HGRSPALCALGRQGTPRASLEKSIDVLLAGAPPSDSTTLVNNNADAAQGH
LPIPAASPALSRRLGLMFQAPDGGGGKGGRGNSPLCWVLHAARGGIEAFN
LAYEG
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mRNA from alignment at Ecto-sp13_S_contig6827:6719..7942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6827.17778.1 ID=mRNA_Ecto-sp13_S_contig6827.17778.1|Name=mRNA_Ecto-sp13_S_contig6827.17778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1224bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6827:6719..7942+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGGGCGGAGCCCCGCTCTCTGCGCGCTGGGGCGGCAAGGGACCCCAAG
GGCAAGCCTAGAGAAGAGCATCGATGTTCTGCTAGCTGGGGCGCCGCCGA
GTGATTCCACCACCCTCGTCAACAACAATGCTGATGCTGCACAGGGTCAT
CTCCCCATTCCCGCCGCGAGTCCGGCGTTGAGTCGCCGTCTCGGCTTGAT
GTTCCAAGCGCCGGACGGCGGTGGTGGTAAGGGGGGGCGAGGGAACAGCC
CCTTGTGTTGGGTACTGCATGCCGCGCGCGGTGGGATCGAGGTGTGTTGC
TCTCCTCGTGCGTGGTCGGCGATCCAGTGGTGCACCTTGCAAGCCTGAGG
CCCGAGAGTTGGTAGGGGGTTGTGTACTGCATACGCCCCCCCCAAGAGCT
TTAGCACACTTTAAGAAGACGTTTACCAAATTCACCGAAAGTGAAAAAAG
GTGAAGATCCCTGCCTACTCTGGGCGGGTTTCTGTCCTTATTGTTTGTGA
CGGCCGTTGAAGTCGTGGCTTGGTTGTTCGCAATGAGCAACAACCCATCC
GAGAAGCCCTTCAAAAGACAAGAACATAGTCTCACCTGCTCGATGCGTGT
AGTCCATGTGGCTAGTTTTAGTATCCTACGATCGCATCCCAACCATTCCT
GAGGATCTAGTTCAGCTTTTGTATGGAAAACACACAACGGGCGCTCGGCC
GTGCGTTCGCGAAGACCAGTGGAGGATCAACTTGGAGACAGGTGGATTGC
CTGTTTTTCAAGCTAACGAATTCTTGTTCTCACGTTCTGAAACGTTTCTT
TGTTCCTCGTGTGATTCAATCCTTTTCCACTCCCGATCACTTCTTCCAAA
CCGTAGTCACCCCTGATTTTGAAAACGTCACGGTTGGGTTTGACCCTGAG
ACCGAATACGTACGAAGCTGCGCAGTGGTGTCTAATTGTTTTGAAATTTT
TCGTCGGTTCTGTCGTTTCACGCCCCCCGGCACTGGCGCAATGCCGCCCG
GCAAACGGAAAACGCTTCACGCGTATTGGTACCATGTTTCTTGACTGTTT
GCACGCCCCATTGCGAGTCGTCGTTCTTGAAGGATTTACCACCGTTTTTC
GTCTTGGTTTATTTAATCCGTGTACCTTTCATTCACCCTCTAGTTGTTTC
CCGATCTGGTCTCGTTGATATATGTACACGCGACGGGTCCATGCGGCAAG
GCCTTCAACCTCGCCTACGAGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6827:6719..7942+

>mRNA_Ecto-sp13_S_contig6827.17778.1 ID=mRNA_Ecto-sp13_S_contig6827.17778.1|Name=mRNA_Ecto-sp13_S_contig6827.17778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6827:6719..7942+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGGGCGGAGCCCCGCTCTCTGCGCGCTGGGGCGGCAAGGGACCCCAAG
GGCAAGCCTAGAGAAGAGCATCGATGTTCTGCTAGCTGGGGCGCCGCCGA
GTGATTCCACCACCCTCGTCAACAACAATGCTGATGCTGCACAGGGTCAT
CTCCCCATTCCCGCCGCGAGTCCGGCGTTGAGTCGCCGTCTCGGCTTGAT
GTTCCAAGCGCCGGACGGCGGTGGTGGTAAGGGGGGGCGAGGGAACAGCC
CCTTGTGTTGGGTACTGCATGCCGCGCGCGGTGGGATCGAGGCCTTCAAC
CTCGCCTACGAGGGC
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