mRNA_Ecto-sp13_S_contig6822.17773.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6822.17773.1
Unique NamemRNA_Ecto-sp13_S_contig6822.17773.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6822.17773.1 vs. uniprot
Match: D7G1P8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P8_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 4.650e-83
Identity = 150/160 (93.75%), Postives = 155/160 (96.88%), Query Frame = 1 
Query:    1 MLANIARAAARPSAGLLRRAAAATTKCASPSVPAAAVSSAPKNLRCASSLSEVLKAEIEEERLVAFDEDVASMVKELGKKGITVKDEPGLSLVRLFGPGVGDEKVTVEFDCDVEGDGDDGWEDDLEDDSDLSLESGEQQQGKGEEXXXXXXXXGDMVGPG 480
            MLAN+ARAAARPSAGL+RRAAAATTKC+SPSVPAAAVSSAPKNLRCASSLSEVLKAEIEEERLVAFDEDVASMVKELGKKGITVKDEPGLSLVRLFGPGVGDEKV+VEFDCDVEGDGDDGWEDDLEDDSDLSLESGEQQQGK   XXXXXXX  DM+GPG
Sbjct:    1 MLANLARAAARPSAGLVRRAAAATTKCSSPSVPAAAVSSAPKNLRCASSLSEVLKAEIEEERLVAFDEDVASMVKELGKKGITVKDEPGLSLVRLFGPGVGDEKVSVEFDCDVEGDGDDGWEDDLEDDSDLSLESGEQQQGKXXXXXXXXXXEDDMIGPG 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6822.17773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1P8_ECTSI4.650e-8393.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6822contigEcto-sp13_S_contig6822:3243..5178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score259.2
Seed ortholog evalue1.3e-66
Seed eggNOG ortholog2880.D7G1P8
Preferred nameMAM33
Model size501
KEGG koko:K12812,ko:K15414
KEGG Pathwayko03013,ko03015,ko03040,ko05164,ko05168,map03013,map03015,map03040,map05164,map05168
KEGG ModuleM00406,M00430
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003676,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006091,GO:0006417,GO:0008150,GO:0008152,GO:0008494,GO:0009060,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015980,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0032268,GO:0032270,GO:0034248,GO:0034250,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045182,GO:0045333,GO:0045727,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055114,GO:0060255,GO:0065007,GO:0070013,GO:0070129,GO:0070131,GO:0080090,GO:0090079,GO:0097159,GO:1901363,GO:2000112
Exons3
EggNOG free text desc.positive regulation of mitochondrial translation
EggNOG OGsKOG2536@1,KOG2536@2759
Ec32 ortholog descriptionMitochondrial glycoprotein
Ec32 orthologEc-12_006720.1
EC3.6.4.13
Cds size501
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463937.7835598-CDS-Ecto-sp13_S_contig6822:3242..34471681463937.7835598-CDS-Ecto-sp13_S_contig6822:3242..3447Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6822 3243..3447 +
1681463937.7954447-CDS-Ecto-sp13_S_contig6822:4162..42691681463937.7954447-CDS-Ecto-sp13_S_contig6822:4162..4269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6822 4163..4269 +
1681463937.804986-CDS-Ecto-sp13_S_contig6822:4989..51781681463937.804986-CDS-Ecto-sp13_S_contig6822:4989..5178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6822 4990..5178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6822.17773.1prot_Ecto-sp13_S_contig6822.17773.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6822 3243..5178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6822.17773.1

>prot_Ecto-sp13_S_contig6822.17773.1 ID=prot_Ecto-sp13_S_contig6822.17773.1|Name=mRNA_Ecto-sp13_S_contig6822.17773.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp
MLANIARAAARPSAGLLRRAAAATTKCASPSVPAAAVSSAPKNLRCASSL
SEVLKAEIEEERLVAFDEDVASMVKELGKKGITVKDEPGLSLVRLFGPGV
GDEKVTVEFDCDVEGDGDDGWEDDLEDDSDLSLESGEQQQGKGEEGQEDE
GDEGDMVGPGKTPVSR*
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mRNA from alignment at Ecto-sp13_S_contig6822:3243..5178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6822.17773.1 ID=mRNA_Ecto-sp13_S_contig6822.17773.1|Name=mRNA_Ecto-sp13_S_contig6822.17773.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1936bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6822:3243..5178+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGCTAATATCGCTCGTGCCGCAGCCCGTCCCTCGGCGGGACTGCT
CCGAAGAGCTGCAGCCGCGACGACCAAGTGCGCCTCCCCCTCCGTTCCTG
CTGCTGCTGTCTCCTCAGCCCCCAAGAACCTGCGATGCGCAAGCAGCCTG
AGCGAGGTGCTGAAGGCGGAAATCGAAGAGGAGCGTCTCGTTGCGTTTGA
CGAAGGTGTGTTAGGTGTGCAGCAGCGAGTAGTTTAATTTCAAGTGAGGC
TAGCACTTCGCAGAGGTGGTGGAGATCTGGCCTTGGGTGTCTTTGGATTC
AATCCAAAATCTTCTTGGGTGGTTCAGAGGGGTCCGATCTGACGGTTGGT
GTAGCAGCGGAGTGACGGCAGTTGCGTACTCCAGCAACTACAGCAGTACT
GCTGTAGTCGCTGTTCACCGATATATCAGCTGGTTTTGACCATGTCACAC
GACATGAAATTCTCGCTCTCTTCTGGTGTAAGACTGGTACTCAAATCGAC
GAGTTTGGCAAGGGCAGACAGCAGTCTCAACACAGCATCGTACTTACTGC
TGAACCTATGTTGCCGCTCTAATCACCCGATTTTGAGCTCTGCATTGTCC
CCCAAATCAACACATCTTCCTTCGTTCCGTTATCTATGTTACATATCTTT
GCTGCTTGTGTGTGTCCCTTTTGACGTCTGGCCTACGGTGTGCCACTCGT
GACTTGCCACGTGCGCACTCCTGCGGCAACGTTATTCCCTCTCTTTCTCT
GTCAAGCCTACATATTTTACTCTGACACAGCGATCATCCGCCTTTGAGAT
GCAAGAAGGGTGAGCAGTGGGCAGTGCAGCCCCCACTACCCGTCCGCTCC
TCTCTCTTGTCATACACCGCGCGCTTGCTCAACAACACGCCCGTGCAACG
AACATTGCTATTCTACCCAGATGTGGCGTCGATGGTGAAAGAACTGGGCA
AGAAGGGAATCACCGTGAAGGATGAGCCGGGGCTGTCGTTGGTACGGCTC
TTCGGGCCCGGCGTTGGCGATGAGAAGGTGAACCCCACCGCGGCGACGGC
GAAGAATCGGTAGCCTTCGCCGGGAAGTTTAGCTTGGTTGTAGTAGGTGG
TTCGGGGTCGGGGTTAGGATTAGGGAAACGAAACCCCGCTCTTGTTCTCA
AAGGTAAATATTTCTCAATGTGGAAGGCGGTCCTCCCTTACTTTTCGCGC
CGCAACTACTGTAGTTGCTTATGATATCCCCGTCTCTCTTGGCCTCTCTC
TGTGCTCCATGTGTTTGGGGGAGGCGTGGAGTACATATTGCCATGTACGG
CATCACGGCCTGGATCGTAAATTGAAACCTGCCTTTCATACAAGGTTGCA
CAGCAGTTGATATATTCGTCGTGCGAGTTGCTGGTACCTGACTGCGGCTA
GCGCCCTAACCATCCCAGCAGTGAGTCGGTTTGTTGTCACAGCAGCGCTG
CCATTTATAAAATGTGACCGACGCACAAAACGAATTGGCGCGAGTCGATG
TTGTCTCGTCTCTACACTAACACCGCTCAAAACGGTGCGGTCGGATCGAC
ATGCGCAAACAGCGGTGCGGCCAGCGGCAAGGCTGTTTGGATTAGCAACC
ACAGAAGCTGATGGTGACTTTGTTTTCTTGACAAGTTATTCAATGAATCT
CGTTGCTTACCTGGTGGTGCGGAGGCATAACCCCCAACGCCTGCTGCTTT
CGGTCGTCGTGTTTGTCGGTGCGCACGGGTGTTGTACGTTTCTGAAGGTA
ACGGTTGAGTTCGACTGCGACGTTGAGGGGGACGGCGATGACGGTTGGGA
GGACGACCTGGAGGACGACTCGGACTTGAGTTTGGAGTCGGGGGAGCAGC
AGCAAGGGAAGGGCGAGGAGGGACAAGAGGACGAGGGCGACGAAGGCGAC
ATGGTCGGCCCAGGCAAGACCCCGGTCTCGCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6822:3243..5178+

>mRNA_Ecto-sp13_S_contig6822.17773.1 ID=mRNA_Ecto-sp13_S_contig6822.17773.1|Name=mRNA_Ecto-sp13_S_contig6822.17773.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6822:3243..5178+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGCTAATATCGCTCGTGCCGCAGCCCGTCCCTCGGCGGGACTGCT
CCGAAGAGCTGCAGCCGCGACGACCAAGTGCGCCTCCCCCTCCGTTCCTG
CTGCTGCTGTCTCCTCAGCCCCCAAGAACCTGCGATGCGCAAGCAGCCTG
AGCGAGGTGCTGAAGGCGGAAATCGAAGAGGAGCGTCTCGTTGCGTTTGA
CGAAGATGTGGCGTCGATGGTGAAAGAACTGGGCAAGAAGGGAATCACCG
TGAAGGATGAGCCGGGGCTGTCGTTGGTACGGCTCTTCGGGCCCGGCGTT
GGCGATGAGAAGGTAACGGTTGAGTTCGACTGCGACGTTGAGGGGGACGG
CGATGACGGTTGGGAGGACGACCTGGAGGACGACTCGGACTTGAGTTTGG
AGTCGGGGGAGCAGCAGCAAGGGAAGGGCGAGGAGGGACAAGAGGACGAG
GGCGACGAAGGCGACATGGTCGGCCCAGGCAAGACCCCGGTCTCGCGGTG
A
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