mRNA_Ecto-sp13_S_contig6822.17772.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6822.17772.1
Unique NamemRNA_Ecto-sp13_S_contig6822.17772.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6822.17772.1 vs. uniprot
Match: D7FHY1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHY1_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.180e-24
Identity = 52/64 (81.25%), Postives = 53/64 (82.81%), Query Frame = 2 
Query:    5 QGRFLKFVVA*TAARGQRLSGDLVLCGLLRRCLWNEEESERVTRCLVLGERPQESCDLILQDVS 196
            QGRFLK  VA TAARGQRLSGD  LCGLL RCLWNE + ER TR LVLGERPQE CDLILQDVS
Sbjct:  150 QGRFLKLAVAWTAARGQRLSGDPGLCGLLGRCLWNEGDLERGTRYLVLGERPQELCDLILQDVS 213
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BLAST of mRNA_Ecto-sp13_S_contig6822.17772.1 vs. uniprot
Match: D7G1P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P9_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 9.410e-23
Identity = 49/65 (75.38%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:    2 SQGRFLKFVVA*TAARGQRLSGDLVLCGLLRRCLWNEEESERVTRCLVLGERPQESCDLILQDVS 196
            SQGRFLK  VA T ARGQRL  D  LCGL+ RCLWNE E ER TR  VLGERPQE CDLILQDVS
Sbjct:    9 SQGRFLKLAVAWTTARGQRLRDDSGLCGLVGRCLWNEGELERGTRYHVLGERPQELCDLILQDVS 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6822.17772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHY1_ECTSI4.180e-2481.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1P9_ECTSI9.410e-2375.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6822contigEcto-sp13_S_contig6822:1115..1312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size198
Hectar predicted targeting categoryother localisation
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463937.7567575-CDS-Ecto-sp13_S_contig6822:1114..13121681463937.7567575-CDS-Ecto-sp13_S_contig6822:1114..1312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6822 1115..1312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6822.17772.1prot_Ecto-sp13_S_contig6822.17772.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6822 1115..1312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6822.17772.1

>prot_Ecto-sp13_S_contig6822.17772.1 ID=prot_Ecto-sp13_S_contig6822.17772.1|Name=mRNA_Ecto-sp13_S_contig6822.17772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
LSGAVPQVRGSLDSRTRAALERRPRAVRSPAALPLERRGVGACHKMSRAG
GASARVLRPDPAGRV*
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mRNA from alignment at Ecto-sp13_S_contig6822:1115..1312-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6822.17772.1 ID=mRNA_Ecto-sp13_S_contig6822.17772.1|Name=mRNA_Ecto-sp13_S_contig6822.17772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6822:1115..1312- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCAGGGGCGGTTCCTCAAGTTCGTGGTAGCCTAGACAGCCGCACGCG
GGCAGCGCTTGAGCGGCGACCTCGTGCTGTGCGGTCTCCTGCGGCGTTGC
CTTTGGAACGAAGAGGAGTCGGAGCGTGTCACAAGATGTCTCGTGCTGGG
GGAGCGTCCGCAAGAGTCCTGCGACCTGATCCTGCAGGACGTGTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6822:1115..1312-

>mRNA_Ecto-sp13_S_contig6822.17772.1 ID=mRNA_Ecto-sp13_S_contig6822.17772.1|Name=mRNA_Ecto-sp13_S_contig6822.17772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6822:1115..1312- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCAGGGGCGGTTCCTCAAGTTCGTGGTAGCCTAGACAGCCGCACGCG
GGCAGCGCTTGAGCGGCGACCTCGTGCTGTGCGGTCTCCTGCGGCGTTGC
CTTTGGAACGAAGAGGAGTCGGAGCGTGTCACAAGATGTCTCGTGCTGGG
GGAGCGTCCGCAAGAGTCCTGCGACCTGATCCTGCAGGACGTGTCTGA
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