mRNA_Ecto-sp13_S_contig68195.17766.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68195.17766.1
Unique NamemRNA_Ecto-sp13_S_contig68195.17766.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig68195.17766.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.010e-29
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAATVKDTFFNSERDCEYPFNSAKKRSSVL 171
            GDELHKPKVIGSATEGALVILAAEWGFNAA VKDTFFNSERDCEYPFNSAKKRSSVL
Sbjct:  461 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVL 517          
BLAST of mRNA_Ecto-sp13_S_contig68195.17766.1 vs. uniprot
Match: A0A835ZDK6_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.170e-19
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAATVKDTFFNSERDCEYPFNSAKKRSSVL 171
            G +LHKPKVIGSATEGALVILA +WGFNA ++K + F+   D EYPFNSAKKRSSVL
Sbjct:  516 GKQLHKPKVIGSATEGALVILAMDWGFNAVSLKKSLFDPAVDREYPFNSAKKRSSVL 572          
BLAST of mRNA_Ecto-sp13_S_contig68195.17766.1 vs. uniprot
Match: A0A835ZLB8_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLB8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.250e-18
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAATVKDTFFNSERDCEYPFNSAKKRSSVL 171
            G  LHKPKVIGSATEGALVIL  +WGFN  T+K   F+   D EYPFNSAKKRSSVL
Sbjct:  481 GKVLHKPKVIGSATEGALVILTTDWGFNVVTLKKALFDPAVDREYPFNSAKKRSSVL 537          
BLAST of mRNA_Ecto-sp13_S_contig68195.17766.1 vs. uniprot
Match: A0A7S2VWE4_9STRA (Calcium-transporting ATPase n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWE4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.840e-14
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAATVKDTFFNSERDCEYPFNSAKKRSSVL 171
            G   H+PKV+GSATEGA+V+L  +WG + A+++  FF+S RD ++PFNS KKRS+V+
Sbjct:  472 GKAYHRPKVVGSATEGAMVLLLRKWGIDYASLRKEFFSSTRDMQFPFNSTKKRSTVI 528          
BLAST of mRNA_Ecto-sp13_S_contig68195.17766.1 vs. uniprot
Match: A0A835YJC8_9STRA (P-type ATPase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.900e-13
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAATVKDTFFNSERDCEYPFNSAKKRSSVL 171
            G  L KPKVIGSA EGAL +LA +WGFN  ++K   F+   D  YPFN+AK  SSVL
Sbjct:    4 GKTLQKPKVIGSAIEGALAMLAKDWGFNPNSMKRALFDPNVDLAYPFNAAKSSSSVL 60          
BLAST of mRNA_Ecto-sp13_S_contig68195.17766.1 vs. uniprot
Match: A0A7S3Y3V0_HETAK (Calcium-transporting ATPase n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3V0_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 2.730e-11
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAATVKDTFFNSERDCEYPFNSAKKRSSVL 171
            G  L KPK+ GSATEGAL++LA  WG +    +   F+ ERDC +PFNS KKRS+ +
Sbjct:  444 GRPLPKPKIQGSATEGALLMLAEAWGVDPVARRAAVFDPERDCAFPFNSTKKRSTAV 500          
BLAST of mRNA_Ecto-sp13_S_contig68195.17766.1 vs. uniprot
Match: A0A812WBN1_SYMMI (ATP2B1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WBN1_SYMMI)

HSP 1 Score: 63.2 bits (152), Expect = 3.300e-10
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAATVKDTFFNSERDCEYPFNSAKKRSSVL 171
            G  LH+P VIGS TEGAL+++A  WG+    +K   F+ E D  + FNSAKKRS+ +
Sbjct:   55 GRPLHRPNVIGSKTEGALILMADSWGYKYDELKSAVFHEETDRMFAFNSAKKRSTAV 111          
BLAST of mRNA_Ecto-sp13_S_contig68195.17766.1 vs. uniprot
Match: A0A7S3Y3S6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3S6_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 4.040e-9
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAATVKDTFFNSERDCEYPFNSAKKRSSVL 171
            G  L KP + GSATEGAL+ +A  WG +    ++  F+  RDC +PFNS KKRS+ +
Sbjct:  235 GRPLAKPVIQGSATEGALLAMAEGWGVDPVARREETFDPARDCAFPFNSTKKRSTAV 291          
BLAST of mRNA_Ecto-sp13_S_contig68195.17766.1 vs. uniprot
Match: W7TSK5_9STRA (Calcium-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSK5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.070e-9
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAATVKDTFFNSERDCEYPFNSAKKRSSVL 171
            G  L +PK++GSATEGAL+++   WG +   +KD  F+   D  +PFNS KKR++ L
Sbjct:  463 GTVLARPKIVGSATEGALLLMIHAWGLHFTHLKDRHFHKATDRVFPFNSGKKRATAL 519          
BLAST of mRNA_Ecto-sp13_S_contig68195.17766.1 vs. uniprot
Match: A0A7S3HU65_9STRA (Calcium-transporting ATPase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HU65_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-7
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAATVKDTFFNSERDCEYPFNSAKKRSSVL 171
            G  L +P +IG+ TEGAL+++  +WGF+    K   FN   D  + FNSAKKRS+ +
Sbjct:  425 GRTLDRPAIIGNKTEGALIMMTNQWGFDHEDFKTKNFNEATDKIFSFNSAKKRSTAI 481          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68195.17766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JXE6_9PHAE2.010e-2998.25Calcium-transporting ATPase n=2 Tax=Ectocarpus Tax... [more]
A0A835ZDK6_9STRA5.170e-1973.68Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A835ZLB8_9STRA6.250e-1871.93Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A7S2VWE4_9STRA2.840e-1454.39Calcium-transporting ATPase n=1 Tax=Triparma pacif... [more]
A0A835YJC8_9STRA2.900e-1357.89P-type ATPase (Fragment) n=1 Tax=Tribonema minus T... [more]
A0A7S3Y3V0_HETAK2.730e-1152.63Calcium-transporting ATPase n=5 Tax=Heterosigma ak... [more]
A0A812WBN1_SYMMI3.300e-1049.12ATP2B1 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7S3Y3S6_HETAK4.040e-947.37Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TSK5_9STRA4.070e-945.61Calcium-transporting ATPase n=2 Tax=Monodopsidacea... [more]
A0A7S3HU65_9STRA1.270e-743.86Calcium-transporting ATPase n=1 Tax=Spumella elong... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68195contigEcto-sp13_S_contig68195:157..718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score117.9
Seed ortholog evalue1.6e-24
Seed eggNOG ortholog2880.D7G3Y5
Model size172
KEGG koko:K01537,ko:K05850
KEGG TC3.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04261,ko04925,ko04970,ko04972,map04020,map04022,map04024,map04261,map04925,map04970,map04972
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0204@2759
EC3.6.3.8
Cds size171
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463936.9785175-CDS-Ecto-sp13_S_contig68195:157..2261681463936.9785175-CDS-Ecto-sp13_S_contig68195:157..226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68195 158..226 -
1681463936.9908338-CDS-Ecto-sp13_S_contig68195:616..7181681463936.9908338-CDS-Ecto-sp13_S_contig68195:616..718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68195 617..718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68195.17766.1prot_Ecto-sp13_S_contig68195.17766.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68195 158..718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68195.17766.1

>prot_Ecto-sp13_S_contig68195.17766.1 ID=prot_Ecto-sp13_S_contig68195.17766.1|Name=mRNA_Ecto-sp13_S_contig68195.17766.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
GDELHKPKVIGSATEGALVILAAEWGFNAATVKDTFFNSERDCEYPFNSA
KKRSSVL
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mRNA from alignment at Ecto-sp13_S_contig68195:157..718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68195.17766.1 ID=mRNA_Ecto-sp13_S_contig68195.17766.1|Name=mRNA_Ecto-sp13_S_contig68195.17766.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=562bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68195:157..718- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGACGAGCTGCACAAGCCGAAGGTGATCGGTAGCGCCACGGAGGGGGC CCTGGTCATCCTCGCAGCGGAGTGGGGCTTCAATGCCGCTACCGTCAAAG ACGTGAGTTGAGAGCAGCGAGTAGAGAGTTGAGAGCGGCCAGACCTCAAC AAGAACCGGCACTATTCAGAGATTGGAGCAACTGAAATATTCCACCTGTT GTCACGCGATTACCCCCAATATCACCGGGCAGTGGCACCGTAGAAATTGT TAGGGTGATGAAGGTTTTCTTTTGTTGTCTTCACATTGACAACCGTTCCG ATCTCTCTACCCAGTACTTGCATCTCTCGTACCGATCTTTCACCTAACGC GGTCGATTCCCGTGGTCACAGGCTATCTTATGCCAAAAGTGGTGTGCTAG CAGGAACATGTCTCTTGCATGTCGTCCCCATACATGCCCCGACAACCGAA ACCGTCCCCGCGGCCGCGTTTTTCCACCTTCCCCGCCTTCAGACGTTCTT CAACTCGGAACGCGACTGCGAGTACCCGTTCAACTCTGCCAAGAAGCGGT CGAGCGTTCTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68195:157..718-

>mRNA_Ecto-sp13_S_contig68195.17766.1 ID=mRNA_Ecto-sp13_S_contig68195.17766.1|Name=mRNA_Ecto-sp13_S_contig68195.17766.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68195:157..718- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGACGAGCTGCACAAGCCGAAGGTGATCGGTAGCGCCACGGAGGGGGC
CCTGGTCATCCTCGCAGCGGAGTGGGGCTTCAATGCCGCTACCGTCAAAG
ACACGTTCTTCAACTCGGAACGCGACTGCGAGTACCCGTTCAACTCTGCC
AAGAAGCGGTCGAGCGTTCTC
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