mRNA_Ecto-sp13_S_contig6819.17765.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6819.17765.1
Unique NamemRNA_Ecto-sp13_S_contig6819.17765.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6819.17765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6819contigEcto-sp13_S_contig6819:5111..5544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size250
Hectar predicted targeting categoryother localisation
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463936.7890804-CDS-Ecto-sp13_S_contig6819:5110..52001681463936.7890804-CDS-Ecto-sp13_S_contig6819:5110..5200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6819 5111..5200 +
1681463936.8028479-CDS-Ecto-sp13_S_contig6819:5385..55441681463936.8028479-CDS-Ecto-sp13_S_contig6819:5385..5544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6819 5386..5544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6819.17765.1prot_Ecto-sp13_S_contig6819.17765.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6819 5111..5544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6819.17765.1

>prot_Ecto-sp13_S_contig6819.17765.1 ID=prot_Ecto-sp13_S_contig6819.17765.1|Name=mRNA_Ecto-sp13_S_contig6819.17765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
VPTWRNRDFLLWCWQNVGIRHRPTFAHLRQAGIDGLVLLAMESDNWAHLS
ATIPHPSCKAPMEAVKAASLALSSGIPFSSAV*
back to top

mRNA from alignment at Ecto-sp13_S_contig6819:5111..5544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6819.17765.1 ID=mRNA_Ecto-sp13_S_contig6819.17765.1|Name=mRNA_Ecto-sp13_S_contig6819.17765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=434bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6819:5111..5544+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCCAACATGGAGAAACCGCGACTTTCTTTTGTGGTGCTGGCAAAACGT
CGGGATTCGACACCGGCCAACCTTCGCACACTTGCGTCAGGTGAGGAAGA
GTTCGACTCAGATGCGGTGAACTGTGCATCGCTGCAAGCACGCGCACTCT
CTGACAAAAATCATAGGATGGTCACCGCTGATGAGCGTCCAAGCTGCGAC
TTGATCAGATCTGTCTCAAACAATGTGCGTGCTTGCGAATATCTTGTTTG
ATGCGCTGCTACTGCTACTGCGAAGGCGGGGATCGACGGCCTCGTGCTGC
TCGCGATGGAGTCAGACAACTGGGCGCATTTGTCGGCCACTATCCCTCAC
CCCTCCTGCAAAGCTCCAATGGAGGCAGTGAAGGCGGCTAGCCTGGCGCT
TTCATCCGGCATTCCATTTAGTTCTGCTGTTTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6819:5111..5544+

>mRNA_Ecto-sp13_S_contig6819.17765.1 ID=mRNA_Ecto-sp13_S_contig6819.17765.1|Name=mRNA_Ecto-sp13_S_contig6819.17765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6819:5111..5544+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCCAACATGGAGAAACCGCGACTTTCTTTTGTGGTGCTGGCAAAACGT
CGGGATTCGACACCGGCCAACCTTCGCACACTTGCGTCAGGCGGGGATCG
ACGGCCTCGTGCTGCTCGCGATGGAGTCAGACAACTGGGCGCATTTGTCG
GCCACTATCCCTCACCCCTCCTGCAAAGCTCCAATGGAGGCAGTGAAGGC
GGCTAGCCTGGCGCTTTCATCCGGCATTCCATTTAGTTCTGCTGTTTAG
back to top