mRNA_Ecto-sp13_S_contig6818.17762.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6818.17762.1
Unique NamemRNA_Ecto-sp13_S_contig6818.17762.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6818.17762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6818contigEcto-sp13_S_contig6818:3052..3718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size667
Hectar predicted targeting categoryother localisation
Exons1
Cds size540
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463936.655061-UTR-Ecto-sp13_S_contig6818:3051..31781681463936.655061-UTR-Ecto-sp13_S_contig6818:3051..3178Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6818 3052..3178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463936.673157-CDS-Ecto-sp13_S_contig6818:3178..37181681463936.673157-CDS-Ecto-sp13_S_contig6818:3178..3718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6818 3179..3718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6818.17762.1prot_Ecto-sp13_S_contig6818.17762.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6818 3179..3718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6818.17762.1

>prot_Ecto-sp13_S_contig6818.17762.1 ID=prot_Ecto-sp13_S_contig6818.17762.1|Name=mRNA_Ecto-sp13_S_contig6818.17762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
MVDSFLATAEGRSTSPRQAFFVLNALLTMCSVPEPLRPSRHTKDRSSHYK
KLGDHLGAANFSNATTWVDCPIHVLPAPGSVSARTHTKGNLLSPQMLVHV
GNQPCNGPYLGYRYHPPLLRQGTLGWTACSAWVRVLFIRSTIPLFHLRVY
FEVSADATGIKECGEERLYRCAYGKSLVGW
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mRNA from alignment at Ecto-sp13_S_contig6818:3052..3718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6818.17762.1 ID=mRNA_Ecto-sp13_S_contig6818.17762.1|Name=mRNA_Ecto-sp13_S_contig6818.17762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=667bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6818:3052..3718+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAACGAGGGGGTACAGAGAGGGGGGGGAACACCCGGAGGGGTCTGTCAAA
CCGTCCGCACCATATATTTTCTTTCGCTGCCACGACCATGTATTCTAGAG
CTGGTTTGGTGTTGAGGTAGTGAATGCATGGTGGACTCGTTCTTGGCCAC
AGCTGAGGGTAGGTCGACGTCACCGAGACAAGCCTTCTTCGTGTTGAACG
CCCTGCTCACCATGTGTTCGGTACCCGAACCTCTGCGTCCTTCAAGACAC
ACGAAAGACCGGTCGAGTCATTACAAGAAACTAGGCGACCATCTCGGAGC
CGCCAACTTTTCCAACGCTACTACGTGGGTTGATTGCCCCATCCATGTGC
TGCCGGCACCGGGCAGTGTGTCGGCGCGCACTCACACAAAAGGGAATTTG
CTGTCACCGCAGATGTTGGTCCACGTGGGCAACCAGCCATGCAATGGTCC
CTACTTGGGCTATCGATACCATCCCCCCCTCCTTCGGCAGGGAACATTGG
GCTGGACCGCTTGTTCCGCGTGGGTCCGAGTGCTATTCATTCGCTCTACG
ATACCCCTCTTCCACCTCCGTGTGTACTTCGAAGTATCTGCTGACGCCAC
TGGGATCAAAGAATGCGGGGAAGAGCGCCTATATCGCTGCGCCTATGGGA
AAAGTCTTGTAGGGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6818:3052..3718+

>mRNA_Ecto-sp13_S_contig6818.17762.1 ID=mRNA_Ecto-sp13_S_contig6818.17762.1|Name=mRNA_Ecto-sp13_S_contig6818.17762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6818:3052..3718+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGACTCGTTCTTGGCCACAGCTGAGGGTAGGTCGACGTCACCGAG
ACAAGCCTTCTTCGTGTTGAACGCCCTGCTCACCATGTGTTCGGTACCCG
AACCTCTGCGTCCTTCAAGACACACGAAAGACCGGTCGAGTCATTACAAG
AAACTAGGCGACCATCTCGGAGCCGCCAACTTTTCCAACGCTACTACGTG
GGTTGATTGCCCCATCCATGTGCTGCCGGCACCGGGCAGTGTGTCGGCGC
GCACTCACACAAAAGGGAATTTGCTGTCACCGCAGATGTTGGTCCACGTG
GGCAACCAGCCATGCAATGGTCCCTACTTGGGCTATCGATACCATCCCCC
CCTCCTTCGGCAGGGAACATTGGGCTGGACCGCTTGTTCCGCGTGGGTCC
GAGTGCTATTCATTCGCTCTACGATACCCCTCTTCCACCTCCGTGTGTAC
TTCGAAGTATCTGCTGACGCCACTGGGATCAAAGAATGCGGGGAAGAGCG
CCTATATCGCTGCGCCTATGGGAAAAGTCTTGTAGGGTGG
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