mRNA_Ecto-sp13_S_contig12092.1777.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12092.1777.1
Unique NamemRNA_Ecto-sp13_S_contig12092.1777.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12092.1777.1 vs. uniprot
Match: D8LD51_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD51_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 2.930e-84
Identity = 185/210 (88.10%), Postives = 187/210 (89.05%), Query Frame = 1 
Query:  178 PDRLTPPGTAGVTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-------QQPGTQALLALANAAAVGVAPSTRAPTRGRRLMRYLSHDAGPADGSSPAASNGTARARGFMRMNSRQGPSMQPPGSVPRMGRKKMALRRLNSLSAAAWGARAESVSDSGSRSPPPXXXXPGGRSVPALGGAGGAPAASRNTPTNPVPATPTTDQAFAATA 786
            PDRLTPPGTAGVTRXXXXXXXXXXXXXXXXXXXXXXXXXXXX        QQPGTQALLALANAAAVGVAP TR P RGR+LMRYLSHDAGPAD SSPAASNGTAR RGFMRMN+ QGPSMQPPGSVPRMGRKKMALRRLNSLSAAAWGARAESVSDSGSRSPPPX   PGGRSVPALGGAGGAP ASRN PTN VPA  TTD AFAATA
Sbjct:   59 PDRLTPPGTAGVTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQPGTQALLALANAAAVGVAPPTRTPRRGRKLMRYLSHDAGPADSSSPAASNGTARVRGFMRMNTSQGPSMQPPGSVPRMGRKKMALRRLNSLSAAAWGARAESVSDSGSRSPPPXRP-PGGRSVPALGGAGGAPPASRNAPTNRVPANTTTDPAFAATA 267
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BLAST of mRNA_Ecto-sp13_S_contig12092.1777.1 vs. uniprot
Match: A0A6H5JZI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI2_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 3.890e-73
Identity = 145/158 (91.77%), Postives = 147/158 (93.04%), Query Frame = 1 
Query:  304 DQQPGTQALLALANAAAVGVAPSTRAPTRGRRLMRYLSHDAGPADGSSPAASNGTARARGFMRMNSRQGPSMQPPGSVPRMGRKKMALRRLNSLSAAAWGARAESVSDSGSRSPPPXXXXPGGRSVPALGGAGGAPAASRNTPTNPVPATPTTDQAFA 777
            DQQPGTQALLALANAAAVGV P T APTRGR+L RYLSHDAGP+DGSSPAASNGTARARGFMRMNSRQGPSMQPPGSVPRMGRKKMALRRLNSLSAAAWGARAESVSDSGSRSP  XXX  GGRSVPALGGAGGAPAASRN PTNPVPAT TTD AFA
Sbjct:  692 DQQPGTQALLALANAAAVGVPPPTHAPTRGRKLRRYLSHDAGPSDGSSPAASNGTARARGFMRMNSRQGPSMQPPGSVPRMGRKKMALRRLNSLSAAAWGARAESVSDSGSRSPXXXXXL-GGRSVPALGGAGGAPAASRNAPTNPVPATATTDPAFA 848
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12092.1777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD51_ECTSI2.930e-8488.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JZI2_9PHAE3.890e-7391.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12092contigEcto-sp13_S_contig12092:3974..4765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size792
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_000470.1
Cds size792
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462642.3294015-CDS-Ecto-sp13_S_contig12092:3973..47651681462642.3294015-CDS-Ecto-sp13_S_contig12092:3973..4765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12092 3974..4765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12092.1777.1prot_Ecto-sp13_S_contig12092.1777.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12092 3974..4765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12092.1777.1

>prot_Ecto-sp13_S_contig12092.1777.1 ID=prot_Ecto-sp13_S_contig12092.1777.1|Name=mRNA_Ecto-sp13_S_contig12092.1777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp
MSPSRTESGAGGHSGGDDTAAAAGSRPPMSPRGSACGAGGDAGPPPKTPA
HPRGGGGANPDRLTPPGTAGVTRKAKKLVVMAEAAAAAAAAAGGGGGGDG
GDQQPGTQALLALANAAAVGVAPSTRAPTRGRRLMRYLSHDAGPADGSSP
AASNGTARARGFMRMNSRQGPSMQPPGSVPRMGRKKMALRRLNSLSAAAW
GARAESVSDSGSRSPPPPPRPPGGRSVPALGGAGGAPAASRNTPTNPVPA
TPTTDQAFAATAPS
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mRNA from alignment at Ecto-sp13_S_contig12092:3974..4765-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12092.1777.1 ID=mRNA_Ecto-sp13_S_contig12092.1777.1|Name=mRNA_Ecto-sp13_S_contig12092.1777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12092:3974..4765- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCCCAGCAGAACGGAGTCTGGCGCTGGTGGTCACAGCGGTGGCGA
TGATACAGCGGCGGCGGCGGGCTCTCGGCCACCGATGAGCCCTCGTGGTT
CCGCCTGCGGGGCGGGCGGCGACGCAGGCCCGCCTCCGAAGACCCCGGCA
CACCCTCGCGGTGGTGGCGGCGCCAATCCCGATAGGCTCACCCCACCCGG
CACCGCGGGGGTGACCCGCAAGGCGAAGAAGCTTGTGGTAATGGCGGAGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGGGGGCGGCGGCGGCGGCGACGGC
GGCGACCAGCAGCCCGGCACTCAGGCCCTGCTGGCGCTCGCGAATGCCGC
CGCGGTCGGCGTGGCTCCCTCCACGCGCGCCCCCACAAGGGGAAGGAGGC
TGATGCGCTACCTGAGTCACGACGCGGGGCCGGCGGATGGTAGCAGCCCC
GCGGCTAGTAACGGCACGGCGAGGGCGAGGGGGTTCATGAGGATGAACAG
CAGGCAGGGCCCAAGCATGCAGCCCCCGGGTAGTGTTCCACGCATGGGCA
GGAAGAAGATGGCGTTGCGGCGGCTGAACTCCCTCTCCGCGGCGGCGTGG
GGTGCGAGGGCAGAGAGCGTGTCCGACAGCGGCAGTCGCTCGCCGCCGCC
GCCGCCGCGGCCGCCCGGTGGCCGCAGCGTGCCGGCGCTTGGCGGTGCCG
GTGGGGCACCGGCCGCCTCGCGAAACACTCCGACCAACCCTGTTCCCGCC
ACTCCCACCACCGACCAAGCATTCGCCGCCACCGCTCCCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12092:3974..4765-

>mRNA_Ecto-sp13_S_contig12092.1777.1 ID=mRNA_Ecto-sp13_S_contig12092.1777.1|Name=mRNA_Ecto-sp13_S_contig12092.1777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12092:3974..4765- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCCCAGCAGAACGGAGTCTGGCGCTGGTGGTCACAGCGGTGGCGA
TGATACAGCGGCGGCGGCGGGCTCTCGGCCACCGATGAGCCCTCGTGGTT
CCGCCTGCGGGGCGGGCGGCGACGCAGGCCCGCCTCCGAAGACCCCGGCA
CACCCTCGCGGTGGTGGCGGCGCCAATCCCGATAGGCTCACCCCACCCGG
CACCGCGGGGGTGACCCGCAAGGCGAAGAAGCTTGTGGTAATGGCGGAGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGGGGGCGGCGGCGGCGGCGACGGC
GGCGACCAGCAGCCCGGCACTCAGGCCCTGCTGGCGCTCGCGAATGCCGC
CGCGGTCGGCGTGGCTCCCTCCACGCGCGCCCCCACAAGGGGAAGGAGGC
TGATGCGCTACCTGAGTCACGACGCGGGGCCGGCGGATGGTAGCAGCCCC
GCGGCTAGTAACGGCACGGCGAGGGCGAGGGGGTTCATGAGGATGAACAG
CAGGCAGGGCCCAAGCATGCAGCCCCCGGGTAGTGTTCCACGCATGGGCA
GGAAGAAGATGGCGTTGCGGCGGCTGAACTCCCTCTCCGCGGCGGCGTGG
GGTGCGAGGGCAGAGAGCGTGTCCGACAGCGGCAGTCGCTCGCCGCCGCC
GCCGCCGCGGCCGCCCGGTGGCCGCAGCGTGCCGGCGCTTGGCGGTGCCG
GTGGGGCACCGGCCGCCTCGCGAAACACTCCGACCAACCCTGTTCCCGCC
ACTCCCACCACCGACCAAGCATTCGCCGCCACCGCTCCCAGC
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