mRNA_Ecto-sp13_S_contig6817.17760.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6817.17760.1
Unique NamemRNA_Ecto-sp13_S_contig6817.17760.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6817.17760.1 vs. uniprot
Match: A0A6H5K0A3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A3_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 5.130e-36
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:  304 MSSSRGSGEITGALDAFDGRRLQQLQQPLHDSGGGGGLKSQPIPIPNVPSITSGGECERGWTCSHEV 504
            MSSSRGSGEITGALD FDGRRLQQLQQPLHDSGGGGGLKSQPIPIPNVP+ITSG +C+RGWTCSHEV
Sbjct:    1 MSSSRGSGEITGALDVFDGRRLQQLQQPLHDSGGGGGLKSQPIPIPNVPTITSGNDCQRGWTCSHEV 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6817.17760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0A3_9PHAE5.130e-3692.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6817contigEcto-sp13_S_contig6817:6628..7131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size505
Hectar predicted targeting categoryother localisation
Exons1
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463936.545579-CDS-Ecto-sp13_S_contig6817:6627..71311681463936.545579-CDS-Ecto-sp13_S_contig6817:6627..7131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6817 6628..7131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6817.17760.1prot_Ecto-sp13_S_contig6817.17760.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6817 6628..7131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6817.17760.1

>prot_Ecto-sp13_S_contig6817.17760.1 ID=prot_Ecto-sp13_S_contig6817.17760.1|Name=mRNA_Ecto-sp13_S_contig6817.17760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
TTLSEGHLHLIHICCFAQCVPHKGDAEDRAHRPWAWRPSLLPPFPLQTLP
ASGGTGSINQEREGNAGRILFVSATASARQPSPAHTTPTRPSKHARITHA
AMSSSRGSGEITGALDAFDGRRLQQLQQPLHDSGGGGGLKSQPIPIPNVP
SITSGGECERGWTCSHEV
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mRNA from alignment at Ecto-sp13_S_contig6817:6628..7131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6817.17760.1 ID=mRNA_Ecto-sp13_S_contig6817.17760.1|Name=mRNA_Ecto-sp13_S_contig6817.17760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6817:6628..7131+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGACACTCTCCGAAGGGCACTTACACCTCATCCATATTTGTTGCTTTGC
GCAGTGCGTGCCACACAAGGGAGACGCGGAAGACAGAGCACATCGTCCTT
GGGCCTGGCGCCCATCTCTACTACCACCGTTTCCGCTGCAAACCCTCCCC
GCTAGTGGCGGCACTGGTTCCATCAATCAAGAGAGAGAGGGGAACGCGGG
ACGCATTTTATTTGTTTCAGCAACAGCATCGGCAAGACAGCCTTCACCGG
CACACACCACCCCCACGCGGCCAAGCAAGCACGCGAGAATAACGCACGCA
GCGATGAGTAGCAGCAGAGGTAGCGGTGAGATCACAGGCGCGCTGGACGC
CTTCGATGGCAGACGGCTGCAGCAGCTGCAACAGCCTCTACACGACAGCG
GCGGCGGCGGTGGTTTGAAGAGTCAGCCGATCCCGATCCCAAACGTACCA
TCAATCACAAGCGGCGGCGAATGCGAGAGAGGCTGGACGTGCTCACATGA
GGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6817:6628..7131+

>mRNA_Ecto-sp13_S_contig6817.17760.1 ID=mRNA_Ecto-sp13_S_contig6817.17760.1|Name=mRNA_Ecto-sp13_S_contig6817.17760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6817:6628..7131+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGACACTCTCCGAAGGGCACTTACACCTCATCCATATTTGTTGCTTTGC
GCAGTGCGTGCCACACAAGGGAGACGCGGAAGACAGAGCACATCGTCCTT
GGGCCTGGCGCCCATCTCTACTACCACCGTTTCCGCTGCAAACCCTCCCC
GCTAGTGGCGGCACTGGTTCCATCAATCAAGAGAGAGAGGGGAACGCGGG
ACGCATTTTATTTGTTTCAGCAACAGCATCGGCAAGACAGCCTTCACCGG
CACACACCACCCCCACGCGGCCAAGCAAGCACGCGAGAATAACGCACGCA
GCGATGAGTAGCAGCAGAGGTAGCGGTGAGATCACAGGCGCGCTGGACGC
CTTCGATGGCAGACGGCTGCAGCAGCTGCAACAGCCTCTACACGACAGCG
GCGGCGGCGGTGGTTTGAAGAGTCAGCCGATCCCGATCCCAAACGTACCA
TCAATCACAAGCGGCGGCGAATGCGAGAGAGGCTGGACGTGCTCACATGA
GGTA
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