mRNA_Ecto-sp13_S_contig68139.17757.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68139.17757.1
Unique NamemRNA_Ecto-sp13_S_contig68139.17757.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68139.17757.1 vs. uniprot
Match: D7G2J2_ECTSI (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J2_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 6.210e-7
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = -3 
Query:   56 GKNVGRITLELFENAVPRTAENFRALHCAPNLG 154
            GKN GR+TLELFENAVPRTAENFRAL     +G
Sbjct:  108 GKNAGRVTLELFENAVPRTAENFRALCTGEKVG 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68139.17757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2J2_ECTSI6.210e-775.76PPIase cyclophilin-type domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68139contigEcto-sp13_S_contig68139:2..624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463936.396766-CDS-Ecto-sp13_S_contig68139:1..781681463936.396766-CDS-Ecto-sp13_S_contig68139:1..78Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68139 2..78 -
1681463936.4062483-CDS-Ecto-sp13_S_contig68139:545..6001681463936.4062483-CDS-Ecto-sp13_S_contig68139:545..600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68139 546..600 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463936.4168084-UTR-Ecto-sp13_S_contig68139:600..6241681463936.4168084-UTR-Ecto-sp13_S_contig68139:600..624Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig68139 601..624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68139.17757.1prot_Ecto-sp13_S_contig68139.17757.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68139 2..600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68139.17757.1

>prot_Ecto-sp13_S_contig68139.17757.1 ID=prot_Ecto-sp13_S_contig68139.17757.1|Name=mRNA_Ecto-sp13_S_contig68139.17757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MAARQPRAAASLGWAHSAGHGSSRPSAARRSRRAPGLCARRSSP
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mRNA from alignment at Ecto-sp13_S_contig68139:2..624-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68139.17757.1 ID=mRNA_Ecto-sp13_S_contig68139.17757.1|Name=mRNA_Ecto-sp13_S_contig68139.17757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68139:2..624- (Ectocarpus species13 EcNAP12_S_4_19m)
AATAGAGTACGCTCCTGCTGTTGCATGGCAGCGCGGCAACCACGCGCGGC
GGCGTCCCTAGGTTGGGCGCACAGTGCAGGCAAGAAGTGAAACCGTAAAC
AACACATATGCCACGCAGCAGCACTGGTGGCATTGAAAACTCGAAACATC
TCACACCTCGCGAATGATCTGCCTCGCGTACCTACACGCCATAACATTCC
CAGCGCGTCAAGTCATCTCGCCGCAACAAAAAAAAGGGTGGCATCGTCAG
CTCGCCGGGACCTCTTCCCGTCGCCTACTCCAAGATCCTCTACCCCAATA
CCGAAAGCCACAGCTCCACGGCCGGACTGCCCACGAAAAGAAAGGAAGGT
TATTACGAAAAAAGACCAGGGAGGGGGCACGCCGAACCTATCCCTACCCC
CAACCCCAACTCAACCGATTCCACACTTCCTCCAGTATGTTCGCTTGCTT
GGAGAAGCCTGCGTAAACTATGTTTGCTTGCTTATAAAAATACTGCGTAG
ACTACTGGCCATGGCCACACGTACTTACCTTCTCTCCGGTGCACAGGGCA
CGGAAGTTCTCGGCCGTCCGCGGCACGGCGTTCTCGAAGAGCTCCAGGGT
TATGCGCCCGACGTTCTTCCCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68139:2..624-

>mRNA_Ecto-sp13_S_contig68139.17757.1 ID=mRNA_Ecto-sp13_S_contig68139.17757.1|Name=mRNA_Ecto-sp13_S_contig68139.17757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68139:2..624- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCGCGGCAACCACGCGCGGCGGCGTCCCTAGGTTGGGCGCACAG
TGCAGGGCACGGAAGTTCTCGGCCGTCCGCGGCACGGCGTTCTCGAAGAG
CTCCAGGGTTATGCGCCCGACGTTCTTCCCCT
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