prot_Ecto-sp13_S_contig6811.17753.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6811.17753.1
Unique Nameprot_Ecto-sp13_S_contig6811.17753.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length651
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6811.17753.1 vs. uniprot
Match: A0A6H5JT76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT76_9PHAE)

HSP 1 Score: 835 bits (2156), Expect = 5.650e-298
Identity = 559/651 (85.87%), Postives = 575/651 (88.33%), Query Frame = 0 
Query:    1 MFVKTHAAAAASTVMVLISLRTGEGFVPPAGANPRTGSSXXXXXXXXXXXXXXXXXXXXXX-TPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKGLSSVEGTIERKQQLKVAELKKQLQRFASLRMWRRATETFEKAKADGLPITAATYTHAINVMSKGGRWKEAIELLEEMIAANNDSNGGPKVAPSVVSYNAAITACSRASKVPAALRLLDEMSARSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLDQVRELDPTPSESTMADVLTSAIAACVTEGAWEQATDWLTDIRMARGGRLPPPEAYAAAANACARAGQGVRARALIAELDNSGKDEAQRPTLECYNAVVLGSAMAGDPKEALRTLKVDVPKAGLQPNTQGFNHVLQGFAKVGDWKTAITILDEQRSGAFPDAPPDRWSYNNAIEACGRAGMVEPAVALLDAMRAASHRNRRLRPCXXXXXXXXXXXXXXXXXXXXXXXXXGMKKDGIKGDQLCSLAAFSAVAAVGRAEKAAEILEDLARGGVSTSEGAVASAKEGLVEIFGSDVGGGGRFARVMAAFEVLEAAHAEKAKKKAELAAAEEGRSA 650
            MFVKTHAAAAASTVMVLISL +GEGFV PAGAN +TGS XXXXX                  TPA                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      QGKGLSSV+GTIERKQQLKVAEL+KQLQRFASLRMWRRATE F+KAKAD LPITAATYTHAINVMSKGGRWKEAIELLEEMIAA NDSNGGPKV PSVVSYNAAITACSRA+KVPAALRLLDEMS+RSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXX RAAGMEPDLVCLKGAMEACRSKGAPKEAGVVL+QVRELDP PS STMADVLTSAIAACVTEGAWEQATDWLTDIRMARGGRLPPPEAYAAAANACARAGQGVRARALIAELDN GKDEAQRPTLECY+AVVLGSA+AGDPKEALR LKVDVPKAGLQPNTQGFNHVLQGFAKVGDWKTA+T+LDEQRSGAFPDAPPDRWSYNNAIEACGR          LDAMRAASHRNRRLRPCXXXXXXXXXXXXXXXXXXXXXXXXX MKKDGIKGDQLCSLAAFSAVAAVGRA+KAAEILEDLARGGVSTSEGAVASAKEGLVE+ GSD+ GGGRFARVMAAFEVLEAA AEKA KKAEL+AAEEGRSA
Sbjct:    1 MFVKTHAAAAASTVMVLISLGSGEGFVQPAGANLKTGSGXXXXXSNCCPSAATSVGRKAAGHTPALLADRGNTRHRIGNGNLILMCEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPQKQQQGKGLSSVDGTIERKQQLKVAELEKQLQRFASLRMWRRATEAFDKAKADRLPITAATYTHAINVMSKGGRWKEAIELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRANKVPAALRLLDEMSSRSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLEQVRELDPRPSASTMADVLTSAIAACVTEGAWEQATDWLTDIRMARGGRLPPPEAYAAAANACARAGQGVRARALIAELDNGGKDEAQRPTLECYDAVVLGSALAGDPKEALRILKVDVPKAGLQPNTQGFNHVLQGFAKVGDWKTAVTVLDEQRSGAFPDAPPDRWSYNNAIEACGRXXXXXXXXXXLDAMRAASHRNRRLRPCXXXXXXXXXXXXXXXXXXXXXXXXXXMKKDGIKGDQLCSLAAFSAVAAVGRADKAAEILEDLARGGVSTSEGAVASAKEGLVEVLGSDIEGGGRFARVMAAFEVLEAAQAEKAAKKAELSAAEEGRSA 651
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6811.17753.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT76_9PHAE5.650e-29885.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 627..647
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 467..591
coord: 155..336
coord: 340..512
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..650
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.511
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 182..209
e-value: 1.2E-4
score: 20.0
coord: 224..259
e-value: 1.4E-5
score: 22.9
coord: 260..293
e-value: 1.7E-7
score: 28.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 432..494
e-value: 7.2E-4
score: 19.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 258..292
score: 11.531
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 369..403
score: 6.062
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 557..591
score: 5.81
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 522..556
score: 5.897
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 482..516
score: 8.901
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 293..327
score: 5.875
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 444..478
score: 7.552
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 332..368
score: 5.229
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 408..443
score: 7.892
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 179..213
score: 9.197
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 222..257
score: 9.197
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 140..332
e-value: 6.7E-11
score: 41.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 335..475
e-value: 4.7E-17
score: 64.3
coord: 145..334
e-value: 1.1E-39
score: 138.6
coord: 476..641
e-value: 1.5E-15
score: 59.4
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 155..342

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6811contigEcto-sp13_S_contig6811:932..5019 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6811.17753.1mRNA_Ecto-sp13_S_contig6811.17753.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6811 932..5100 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6811.17753.1 ID=prot_Ecto-sp13_S_contig6811.17753.1|Name=mRNA_Ecto-sp13_S_contig6811.17753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=651bp
MFVKTHAAAAASTVMVLISLRTGEGFVPPAGANPRTGSSSGGSSNCCPSA
ATSEESKPAGHTPALLADRSSTRHRRGNGNLILMCEGGGGSPAAVGATAG
TAGRKGRKPPSAAAGVRRRPPQKQQQGKGLSSVEGTIERKQQLKVAELKK
QLQRFASLRMWRRATETFEKAKADGLPITAATYTHAINVMSKGGRWKEAI
ELLEEMIAANNDSNGGPKVAPSVVSYNAAITACSRASKVPAALRLLDEMS
ARSGLSPDIYSYAAVMSGLAKARNPGRAIELLGEMRAAGMEPDLVCLKGA
MEACRSKGAPKEAGVVLDQVRELDPTPSESTMADVLTSAIAACVTEGAWE
QATDWLTDIRMARGGRLPPPEAYAAAANACARAGQGVRARALIAELDNSG
KDEAQRPTLECYNAVVLGSAMAGDPKEALRTLKVDVPKAGLQPNTQGFNH
VLQGFAKVGDWKTAITILDEQRSGAFPDAPPDRWSYNNAIEACGRAGMVE
PAVALLDAMRAASHRNRRLRPCRYSYRGALQACRAAVDDAAALRLLEGMK
KDGIKGDQLCSLAAFSAVAAVGRAEKAAEILEDLARGGVSTSEGAVASAK
EGLVEIFGSDVGGGGRFARVMAAFEVLEAAHAEKAKKKAELAAAEEGRSA
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf