mRNA_Ecto-sp13_S_contig6808.17751.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6808.17751.1
Unique NamemRNA_Ecto-sp13_S_contig6808.17751.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6808.17751.1 vs. uniprot
Match: A0A6H5JH20_9PHAE (S-methyl-5-thioribose kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH20_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 5.660e-35
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 QDTLGFAGMKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLVMASKPLDGSSDGVIAEAEDL 204
            QDTLGFAGMKMIRRVVGISHVEDLDGIKDRAARA+CESHALALGKRLVMASKPLDGSSDGVIAEA+D+
Sbjct:  281 QDTLGFAGMKMIRRVVGISHVEDLDGIKDRAARAQCESHALALGKRLVMASKPLDGSSDGVIAEAKDV 348
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BLAST of mRNA_Ecto-sp13_S_contig6808.17751.1 vs. uniprot
Match: D7FTE3_ECTSI (Methylthioribose-1-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE3_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.190e-34
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 QDTLGFAGMKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLVMASKPLDGSSDGVIAEAEDL 204
            QDTLGFAGMKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLVMASKPLDGSSDGVIAEAED+
Sbjct:  679 QDTLGFAGMKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLVMASKPLDGSSDGVIAEAEDV 746
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BLAST of mRNA_Ecto-sp13_S_contig6808.17751.1 vs. uniprot
Match: A0A1Z5JWS9_FISSO (Methylthioribose-1-phosphate isomerase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWS9_FISSO)

HSP 1 Score: 74.7 bits (182), Expect = 4.530e-14
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    4 DTLGFAGMKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLVMASKPLDGSSDGVIAEAEDL 204
            DTLGFAGMKM+RR+VGI+HVEDLD IKD   RA+CE H LAL K  +  + PL  S D  I  A   
Sbjct:  743 DTLGFAGMKMLRRIVGIAHVEDLDSIKDADIRAQCERHGLALAKTFIKTA-PLIPSMDDAIQLARSF 808
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BLAST of mRNA_Ecto-sp13_S_contig6808.17751.1 vs. uniprot
Match: A0A382ZZP0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382ZZP0_9ZZZZ)

HSP 1 Score: 67.8 bits (164), Expect = 5.790e-13
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 QDTLGFAGMKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLVMASKPLDGSSDGVIAEAEDL 204
            QD +GFAG KM+RRV+G +HVEDL+ I D  ARA+CE + + L +RL++      G  D VI  A+D+
Sbjct:   50 QDAIGFAGAKMMRRVIGAAHVEDLEIISDPNARAKCEKYVITLARRLLLHRSEYSGIDD-VITAAQDI 116
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BLAST of mRNA_Ecto-sp13_S_contig6808.17751.1 vs. uniprot
Match: A0A7S2Y4L4_9STRA (S-methyl-5-thioribose kinase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y4L4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.010e-12
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    4 DTLGFAGMKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLVMASKPLDGSSDGV 183
            DTL FAGMKM+RR+VGI+HVEDLD IKD   RA+CE H L + KR +  +  +    + +
Sbjct:  441 DTLSFAGMKMLRRIVGIAHVEDLDSIKDADTRAKCERHGLEIAKRFIKTAGSITSMKEAI 500
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BLAST of mRNA_Ecto-sp13_S_contig6808.17751.1 vs. uniprot
Match: C1MR76_MICPC (Methylthioribose-1-phosphate isomerase n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MR76_MICPC)

HSP 1 Score: 70.5 bits (171), Expect = 1.400e-12
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 QDTLGFAGMKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLVMASKPLDGSSDGVIAEAEDL 204
            +DTLGFAG KM RR+VGI+HV DLD I D  ARARCE++AL   +R+++ +  L  S D V A A++L
Sbjct:  746 KDTLGFAGAKMTRRIVGIAHVADLDSIGDADARARCETNALRCARRMILEAGSL--SVDDVCAMAKEL 811
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BLAST of mRNA_Ecto-sp13_S_contig6808.17751.1 vs. uniprot
Match: A0A5B8MN97_9CHLO (Methylthioribose-1-phosphate isomerase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MN97_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 1.920e-12
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 QDTLGFAGMKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLVMASKPLDGSSDGVIAEAE 198
            +DTLGFAG KMIRR+VG++HV+D+D I+D   RA CE  AL  GKRL++     +   + V A +E
Sbjct:  738 EDTLGFAGAKMIRRIVGVAHVQDMDRIEDAKVRADCEKRALKFGKRLLIGRATFESIEEVVSAASE 803
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BLAST of mRNA_Ecto-sp13_S_contig6808.17751.1 vs. uniprot
Match: A0A7S2PNI4_9STRA (Methylthioribose-1-phosphate isomerase n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PNI4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.880e-12
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    4 DTLGFAGMKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLVMASKPLDGSSDGVIAEA 195
            DTLGFAGMKM+RR+VGI+HVEDL+ I D  AR++CE   L + K L+  +K + G+ + V+A A
Sbjct:  726 DTLGFAGMKMLRRIVGIAHVEDLESIADADARSKCERRGLEIAKELIKEAK-VYGTIEDVVAMA 788
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BLAST of mRNA_Ecto-sp13_S_contig6808.17751.1 vs. uniprot
Match: A0A7S3C8Z7_9CHLO (Methylthioribose-1-phosphate isomerase n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C8Z7_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 4.890e-12
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 QDTLGFAGMKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLVMASKPLDGSSDGVIAEAEDL 204
            +DTLGFAG KM+RR+VG++HV+D+D I+D   RA CE  AL  GKRL++         + V++EA  L
Sbjct:  750 EDTLGFAGAKMVRRIVGVAHVQDMDRIEDEKRRAECERRALLFGKRLLIGRAAFQNIEE-VVSEAAAL 816
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6808.17751.1 vs. uniprot
Match: A0A7S4CZY1_9EUGL (S-methyl-5-thioribose kinase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CZY1_9EUGL)

HSP 1 Score: 68.6 bits (166), Expect = 6.440e-12
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    4 DTLGFAGMKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLV 144
            D+LGFAG KMIRRVVGI+HVEDLD I+D   +ARCE HAL + K LV
Sbjct:  364 DSLGFAGAKMIRRVVGIAHVEDLDCIEDHDKKARCERHALNIAKELV 410
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6808.17751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH20_9PHAE5.660e-3595.59S-methyl-5-thioribose kinase n=1 Tax=Ectocarpus sp... [more]
D7FTE3_ECTSI1.190e-3498.53Methylthioribose-1-phosphate isomerase n=1 Tax=Ect... [more]
A0A1Z5JWS9_FISSO4.530e-1458.21Methylthioribose-1-phosphate isomerase n=2 Tax=Fis... [more]
A0A382ZZP0_9ZZZZ5.790e-1348.53Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7S2Y4L4_9STRA1.010e-1251.67S-methyl-5-thioribose kinase n=1 Tax=Amphiprora pa... [more]
C1MR76_MICPC1.400e-1254.41Methylthioribose-1-phosphate isomerase n=2 Tax=Mic... [more]
A0A5B8MN97_9CHLO1.920e-1250.00Methylthioribose-1-phosphate isomerase n=1 Tax=Chl... [more]
A0A7S2PNI4_9STRA4.880e-1253.13Methylthioribose-1-phosphate isomerase n=2 Tax=Lep... [more]
A0A7S3C8Z7_9CHLO4.890e-1248.53Methylthioribose-1-phosphate isomerase n=1 Tax=Chl... [more]
A0A7S4CZY1_9EUGL6.440e-1270.21S-methyl-5-thioribose kinase n=1 Tax=Eutreptiella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6808contigEcto-sp13_S_contig6808:7498..7701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score116.7
Seed ortholog evalue3.7e-24
Seed eggNOG ortholog2880.D7FTE3
Preferred nameMRI1
Model size204
KEGG rclassRC00002,RC00078,RC01151
KEGG koko:K00899,ko:K03239,ko:K08963,ko:K20047
KEGG ReactionR04143,R04420
KEGG Pathwayko00270,ko01100,ko03013,map00270,map01100,map03013
KEGG ModuleM00034
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0000166,GO:0000302,GO:0001650,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005851,GO:0005911,GO:0006082,GO:0006412,GO:0006413,GO:0006518,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008135,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009066,GO:0009067,GO:0009086,GO:0009506,GO:0009719,GO:0009723,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010467,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017076,GO:0017144,GO:0019001,GO:0019509,GO:0019538,GO:0019752,GO:0030054,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0034645,GO:0035639,GO:0035690,GO:0036094,GO:0042221,GO:0042493,GO:0042802,GO:0043043,GO:0043094,GO:0043102,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046394,GO:0046523,GO:0050896,GO:0051716,GO:0055044,GO:0070013,GO:0070887,GO:0071241,GO:0071248,GO:0071265,GO:0071267,GO:0071281,GO:0071310,GO:0071369,GO:0071495,GO:0071704,GO:0071731,GO:0071732,GO:0097159,GO:0097366,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170
Exons1
EggNOG free text desc.S-methyl-5-thioribose-1-phosphate isomerase activity
EggNOG OGsCOG0182@1,KOG1468@2759
EC2.7.1.100,5.3.1.23
Cds size180
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463935.8025272-CDS-Ecto-sp13_S_contig6808:7497..76771681463935.8025272-CDS-Ecto-sp13_S_contig6808:7497..7677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6808 7498..7677 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463935.8183794-UTR-Ecto-sp13_S_contig6808:7677..77011681463935.8183794-UTR-Ecto-sp13_S_contig6808:7677..7701Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6808 7678..7701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6808.17751.1prot_Ecto-sp13_S_contig6808.17751.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6808 7498..7677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6808.17751.1

>prot_Ecto-sp13_S_contig6808.17751.1 ID=prot_Ecto-sp13_S_contig6808.17751.1|Name=mRNA_Ecto-sp13_S_contig6808.17751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
MKMIRRVVGISHVEDLDGIKDRAARARCESHALALGKRLVMASKPLDGSS
DGVIAEAEDL
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mRNA from alignment at Ecto-sp13_S_contig6808:7498..7701-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6808.17751.1 ID=mRNA_Ecto-sp13_S_contig6808.17751.1|Name=mRNA_Ecto-sp13_S_contig6808.17751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6808:7498..7701- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACACGCTCGGCTTCGCGGGGATGAAGATGATTCGGCGCGTGGTAGG
CATCTCCCACGTCGAAGACCTCGACGGCATCAAGGACAGAGCCGCCCGCG
CGCGGTGCGAGTCCCACGCCCTCGCCCTCGGGAAACGCCTGGTCATGGCC
TCGAAACCCCTCGACGGCAGTTCCGACGGCGTCATCGCCGAGGCTGAAGA
CCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6808:7498..7701-

>mRNA_Ecto-sp13_S_contig6808.17751.1 ID=mRNA_Ecto-sp13_S_contig6808.17751.1|Name=mRNA_Ecto-sp13_S_contig6808.17751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6808:7498..7701- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGATGATTCGGCGCGTGGTAGGCATCTCCCACGTCGAAGACCTCGA
CGGCATCAAGGACAGAGCCGCCCGCGCGCGGTGCGAGTCCCACGCCCTCG
CCCTCGGGAAACGCCTGGTCATGGCCTCGAAACCCCTCGACGGCAGTTCC
GACGGCGTCATCGCCGAGGCTGAAGACCTT
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