mRNA_Ecto-sp13_S_contig6807.17750.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6807.17750.1
Unique NamemRNA_Ecto-sp13_S_contig6807.17750.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6807.17750.1 vs. uniprot
Match: D7G085_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G085_ECTSI)

HSP 1 Score: 565 bits (1456), Expect = 1.050e-194
Identity = 280/288 (97.22%), Postives = 283/288 (98.26%), Query Frame = 1 
Query:    1 MMAAPEETLPLRASVNGDGPGNHDGHHGKKVALGATVAYLLVFALICFPAVVPLWHPTYYAELGAEQRGWTWLGANALWLALALLWTLLHLDNGPCVATACLLCSVLWFYLSLVLLSQACRGQLPLLAIADALVHLTMLVVCFRAAWVGVAKKSQKARSDGSSTWRRVLRKWALVSASATLFAAFLGCCSSSLPLIPPVSERESAPWEWNSAILFVMTLAVLWAAFLTRGGLVDETKRAACAWIALSFSGSFVLCSFSWQALGLDARSVATSVVLAAETAVLAVAAVV 864
            MMAAPEETLPLR SVNGDGPGNHDGHHGKK+ALGATVAYLLVFALICFPAVVPLWHPTYYAELGAEQRGWTWLGANALWLALALLWTLLHLDNGPCVATACLLCSVLWFYLSLVLLSQACRGQLPL+AIADALVHLTML+VCFRAAWVGVAKKSQKARSDGSSTWRRVLRKWALVSASATLFAAFLGCCSSSLPLIPPVSERESAPWEWNSAILF MTLAVLWAAFLTRGGLVDETKRAACAWIALSFSGSFVLCSFSWQALGLDARSV TSVVLA ETAVLA AAVV
Sbjct:    1 MMAAPEETLPLRVSVNGDGPGNHDGHHGKKLALGATVAYLLVFALICFPAVVPLWHPTYYAELGAEQRGWTWLGANALWLALALLWTLLHLDNGPCVATACLLCSVLWFYLSLVLLSQACRGQLPLMAIADALVHLTMLIVCFRAAWVGVAKKSQKARSDGSSTWRRVLRKWALVSASATLFAAFLGCCSSSLPLIPPVSERESAPWEWNSAILFAMTLAVLWAAFLTRGGLVDETKRAACAWIALSFSGSFVLCSFSWQALGLDARSVTTSVVLAVETAVLAAAAVV 288
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6807.17750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G085_ECTSI1.050e-19497.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6807contigEcto-sp13_S_contig6807:3004..6376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2534
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_000290.1
Cds size867
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463935.7440515-UTR-Ecto-sp13_S_contig6807:3003..46701681463935.7440515-UTR-Ecto-sp13_S_contig6807:3003..4670Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6807 3004..4670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463935.7548487-CDS-Ecto-sp13_S_contig6807:4670..49911681463935.7548487-CDS-Ecto-sp13_S_contig6807:4670..4991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6807 4671..4991 -
1681463935.7648857-CDS-Ecto-sp13_S_contig6807:5830..63761681463935.7648857-CDS-Ecto-sp13_S_contig6807:5830..6376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6807 5831..6376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6807.17750.1prot_Ecto-sp13_S_contig6807.17750.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6807 4671..6376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6807.17750.1

>prot_Ecto-sp13_S_contig6807.17750.1 ID=prot_Ecto-sp13_S_contig6807.17750.1|Name=mRNA_Ecto-sp13_S_contig6807.17750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=289bp
MMAAPEETLPLRASVNGDGPGNHDGHHGKKVALGATVAYLLVFALICFPA
VVPLWHPTYYAELGAEQRGWTWLGANALWLALALLWTLLHLDNGPCVATA
CLLCSVLWFYLSLVLLSQACRGQLPLLAIADALVHLTMLVVCFRAAWVGV
AKKSQKARSDGSSTWRRVLRKWALVSASATLFAAFLGCCSSSLPLIPPVS
ERESAPWEWNSAILFVMTLAVLWAAFLTRGGLVDETKRAACAWIALSFSG
SFVLCSFSWQALGLDARSVATSVVLAAETAVLAVAAVV*
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mRNA from alignment at Ecto-sp13_S_contig6807:3004..6376-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6807.17750.1 ID=mRNA_Ecto-sp13_S_contig6807.17750.1|Name=mRNA_Ecto-sp13_S_contig6807.17750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3373bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6807:3004..6376- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCCGCTCCGGAGGAAACGCTCCCGCTGAGGGCGAGCGTCAACGG
TGACGGTCCCGGGAACCACGACGGGCACCACGGGAAGAAGGTGGCCCTGG
GAGCGACCGTCGCCTACCTCTTGGTCTTCGCGTTGATATGTTTCCCAGCC
GTGGTCCCCCTGTGGCACCCCACCTACTACGCCGAGCTTGGCGCCGAGCA
GAGGGGTTGGACCTGGCTCGGCGCCAACGCCCTCTGGCTCGCGCTGGCCC
TGCTATGGACCCTCCTGCACCTGGACAACGGGCCGTGCGTCGCTACAGCC
TGCCTCCTCTGCTCCGTCCTATGGTTCTACCTCAGCCTCGTGCTCCTCTC
CCAGGCGTGCAGGGGGCAGTTGCCGCTCCTGGCCATCGCCGACGCGCTCG
TGCACTTGACCATGCTGGTCGTGTGCTTCCGGGCGGCCTGGGTAGGCGTG
GCGAAGAAGTCGCAGAAGGCGAGGTCCGATGGCAGCTCCACGTGGAGACG
GGTGCTCCGAAAGTGGGCGCTGGTGTCCGCTAGCGCCACTCTTTTCGTGA
GTTTTATTGGCGTTTCTGGACACTCCAGGTTCAACGGCAAGGGGTAATAT
TGCTGCTGTCGTCGCCTTCACAGTACCAACTGATTCTGACCTTTACTCAG
TCCCCTTTATCATACGGTCTGTTCCACCTGACGAGGACCCCTTCCGTGGC
GACAGGCTAAACTACCCGAGAAGGGTTCGTGTATGGACAGTCAAAGACGT
GAATGATTGACCCAGAATATCCACACAGATGCGATAGCCTAAACAAATAT
GTAGGCCCCAAGAAGTCACCGACGTCGTGGGCGGCATGTGGGACATACGG
CAATATATACGTGTGCCATCAGCCGCTGAGCATGGGGGCCATAGGGCGTA
ATGTCAAACTATGCAACATGGTCCATTAGCAGCATCGAGGCATTACCGTT
TCCGCATGAACGTTACGATGCATATTCTCCTCCTGGAGTAAACCAGCTTG
TGTGTAGCGCGGTGCCGCAAATCATCAACAGTGGAAATTTTCAGTCTGAA
GGAATCGTATAGCATCTTTTTTTTTCAGAATCTTTTTTTTCATTGACTTG
GGGCTTTTTTCCACTGCAGTCGTCGTTAGGCTTTGTTGCAAACGGGATTA
GTGGCGAGGATCTCCTTCTAGGCACAGGTTGCGAAGAGCTAAAGAGTCGA
TACCCGCGGGGGATAGGATTTTCACTTTGTAGTCGCTGTGCCTCTGCCTA
CCTCTGAGCTTATGTGGGTCGGGTTTCGCATCGCTGCTCGTCGTCTGATA
ATGGTACACATCCGATTGAGGTGCACGTTATCCACCATACGCCTTTGGTA
CTCGTGTAACGCTCCCACCTTGTCTCCCTGAACAGGCCGCTTTCCTGGGA
TGCTGCTCGAGCAGTCTTCCGCTAATCCCGCCGGTTTCGGAGAGAGAGTC
GGCACCCTGGGAATGGAACTCCGCCATACTCTTCGTCATGACCCTGGCGG
TTCTTTGGGCGGCGTTCCTCACGCGGGGCGGGCTCGTTGACGAGACGAAG
CGGGCAGCGTGCGCCTGGATTGCCCTCTCTTTCTCCGGCAGCTTCGTGCT
GTGCTCGTTCTCCTGGCAGGCGCTTGGGCTGGACGCGCGCAGCGTTGCCA
CGTCGGTGGTTCTTGCCGCAGAAACCGCCGTCCTGGCGGTGGCCGCTGTG
GTTTGACCGGAGACAAGGAAGAGCCAGCGTGCAAAGAGTGATGGTGGTAC
ATACATGATGTACTTCGAAGCATAGAGCCCGAGATGGAAGGGTACCACGT
TTGGCATCTAACCGAGGTGTTCGGTGTCGACGATCGCTCTTGCCGTTAGG
CGAAGGGGAGCTGCTGGGTTAGTTAGTTCCCCGTGGAAGCACTAGCCCAC
GCAGTGTGGTGGATAGAACCCCACGCGAGTGTTCGTTTGCGTGTTTTGTT
ATCATTGACGGTTTTTTTCGGGCACATGAGCCGGGGGCACGCAGGAGGAA
GGCCACACACAAGAGTTTTTTTTTCTCTCCACCGTTCCTCTGCGGTGCTT
TCCTTTACAAGGATAAACCGTGAGATTCCCTCGTCGGCTGTAAAGTCGAA
GTTATAGCGTGCGCGCACCATACGTTCGCTTTCCGCAGTGTGTAGGCATG
CTGTCAGATAAGTTCCCAGTCCATGTGACTGCGCCGGGACTCAAACCCAC
GCTCCACACGTCAGACTTGCTCTCGTCGAATGCGTTAGGGGTAGAACGAC
TCAGCCAGTGTTGTGTGAAAATTTGGGATGGTGCCAAGTCGCACTAGACA
TGGTGCCAAATCGTGGGCATGCACGTAGGGTTGATTTTGGTTGGCCGTGC
TGCGGATCTCAAGAGGTGCCACCTGAGTACCCATGACCCTAGAGTTTGGT
TGAAGTCTTTGCCAATTTTCCCGCTGCAGGTAGGGCATCGGATGCTGACT
CTCTCAACATGCAATTCATTGATTCTTATGTCGGTGTTGTTTCTTTTTGA
CGGTGCTGCGGAAATTCGAGAGGCACCAACTGAGTTTTAGTTCGTCACAT
TTTGTCGAATTACCCCCCCTCCGGATAGGGTATCGGCTGCCGAATCTCTC
GATCGGAAACGCTAGTCAAATTTCGGGTGAGTAATAGGTCAGCAGCGTTA
CGGGGTTGCGTTTGGCAGTGATATGGTATGGTATTCTCCCGTGAAAATAA
TGGGTACAAATCCCTTCAGCTTGTTGCTCTCTCGTATTTTCGGCATGAAC
AGCTCTTCTCAGATGGCGAGGTAGTCACCACCAGTTTTTGGTTGTGTAGG
TGTGAGTAGCGCCATCCGTGTTTTTGGTATGTATTATTAGTATTATATTG
TCAATACCTGGTAGCGAGACTCGCTTTTGTAGAGGTGAATGGAGGCTCGA
ATGTTTTTCTGTAGCCGCTTTTCGGAGGAGCCCCTGAGGCCAAAGTTTGT
TGTTGTCTGTTGTTGTCTGTTGTTGTTTGTACCATGGACTTCTCCTGTGC
TCCGGAAGGGTGATTTTGAGGGGAGCTGAGGTTATTCAGGGTGGGCGTTT
CGTTCAATTGATTGCGTGCTGTCCACACGGGTGGGCTCCACAGCGGTGTG
GCCTATTCATGTAAAGGTTGCAGCTTGCCCAACCCCGCGTTTTGGGGCTT
TCGATACGGGTTTTAGACTAGGGACCTCTCAGGCGGGAAGGCAGCTTTGC
ACTTGCACCCAGGGCTGGAGCTGTTTCCGCATCATCCAATCAGCAGGCGC
CTTTCATTCTTATTCTTTGATTCGGGAACTTCGCAAGAAGAACACTATGT
TTTTTGGTGGTTGACAATGACTTTTCACTCGACTGCTAGATTCAAGAGTG
TCATCATACGGTGAAAAATTTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6807:3004..6376-

>mRNA_Ecto-sp13_S_contig6807.17750.1 ID=mRNA_Ecto-sp13_S_contig6807.17750.1|Name=mRNA_Ecto-sp13_S_contig6807.17750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=867bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6807:3004..6376- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCCGCTCCGGAGGAAACGCTCCCGCTGAGGGCGAGCGTCAACGG
TGACGGTCCCGGGAACCACGACGGGCACCACGGGAAGAAGGTGGCCCTGG
GAGCGACCGTCGCCTACCTCTTGGTCTTCGCGTTGATATGTTTCCCAGCC
GTGGTCCCCCTGTGGCACCCCACCTACTACGCCGAGCTTGGCGCCGAGCA
GAGGGGTTGGACCTGGCTCGGCGCCAACGCCCTCTGGCTCGCGCTGGCCC
TGCTATGGACCCTCCTGCACCTGGACAACGGGCCGTGCGTCGCTACAGCC
TGCCTCCTCTGCTCCGTCCTATGGTTCTACCTCAGCCTCGTGCTCCTCTC
CCAGGCGTGCAGGGGGCAGTTGCCGCTCCTGGCCATCGCCGACGCGCTCG
TGCACTTGACCATGCTGGTCGTGTGCTTCCGGGCGGCCTGGGTAGGCGTG
GCGAAGAAGTCGCAGAAGGCGAGGTCCGATGGCAGCTCCACGTGGAGACG
GGTGCTCCGAAAGTGGGCGCTGGTGTCCGCTAGCGCCACTCTTTTCGCCG
CTTTCCTGGGATGCTGCTCGAGCAGTCTTCCGCTAATCCCGCCGGTTTCG
GAGAGAGAGTCGGCACCCTGGGAATGGAACTCCGCCATACTCTTCGTCAT
GACCCTGGCGGTTCTTTGGGCGGCGTTCCTCACGCGGGGCGGGCTCGTTG
ACGAGACGAAGCGGGCAGCGTGCGCCTGGATTGCCCTCTCTTTCTCCGGC
AGCTTCGTGCTGTGCTCGTTCTCCTGGCAGGCGCTTGGGCTGGACGCGCG
CAGCGTTGCCACGTCGGTGGTTCTTGCCGCAGAAACCGCCGTCCTGGCGG
TGGCCGCTGTGGTTTGA
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