mRNA_Ecto-sp13_S_contig68055.17748.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68055.17748.1
Unique NamemRNA_Ecto-sp13_S_contig68055.17748.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68055.17748.1 vs. uniprot
Match: D7G0Z1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z1_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 8.400e-23
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSNADREDGLLVGMGSLLGSS 150
            LDMPPEVAGVTFLAFGNGAPDVFSAFVALTS+ADREDGLLVGMGSLLGS+
Sbjct:   46 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSSADREDGLLVGMGSLLGST 95
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BLAST of mRNA_Ecto-sp13_S_contig68055.17748.1 vs. uniprot
Match: A0A6H5KVK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK8_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.910e-22
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSNADREDGLLVGMGSLLGSS 150
            LDMPPEVAGVTFLAFGNGAPDVFSAFVALTS+ DREDGLLVGMGSLLGS+
Sbjct:    5 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSSTDREDGLLVGMGSLLGST 54
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BLAST of mRNA_Ecto-sp13_S_contig68055.17748.1 vs. uniprot
Match: A0A835ZHX1_9STRA (Sodium/calcium exchanger protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHX1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.950e-11
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSNADREDGLLVGMGSLLGSS 150
            +D+ PEVAGVTFLAFGNGAPDVFS+  A+T     E+ LLVG+G+LLG++
Sbjct:   42 MDLSPEVAGVTFLAFGNGAPDVFSSIAAVTGPNGAEN-LLVGVGALLGAA 90
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BLAST of mRNA_Ecto-sp13_S_contig68055.17748.1 vs. uniprot
Match: A0A8B7XNN8_ACAPL (mitochondrial sodium/calcium exchanger protein-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XNN8_ACAPL)

HSP 1 Score: 58.2 bits (139), Expect = 1.930e-8
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSNADREDGLLVG 126
            L +   VAGVTFLAFGNGAPDVFSA VA+T++ D + GL +G
Sbjct:  132 LKLSDNVAGVTFLAFGNGAPDVFSAVVAITNSKDGDAGLAIG 173
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BLAST of mRNA_Ecto-sp13_S_contig68055.17748.1 vs. uniprot
Match: A0A8J1TKN5_OWEFU (Ofus.G04155 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TKN5_OWEFU)

HSP 1 Score: 56.2 bits (134), Expect = 9.260e-8
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSNADREDGLLVG 126
            L + P VAGVTFLAFGNGAPD+FSA  A +S++  + GL +G
Sbjct:  151 LRLSPNVAGVTFLAFGNGAPDIFSAIAAFSSSSGGDAGLAIG 192
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BLAST of mRNA_Ecto-sp13_S_contig68055.17748.1 vs. uniprot
Match: UPI001454E79B (mitochondrial sodium/calcium exchanger protein-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001454E79B)

HSP 1 Score: 55.8 bits (133), Expect = 1.260e-7
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSNADREDGLLVG 126
            L +   VAGVTFLAFGNGAPDV SA VA+T++ D + GL +G
Sbjct:  129 LKLSDNVAGVTFLAFGNGAPDVISAIVAITNSNDGDAGLAIG 170
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BLAST of mRNA_Ecto-sp13_S_contig68055.17748.1 vs. uniprot
Match: UPI0018D660D3 (mitochondrial sodium/calcium exchanger protein-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D660D3)

HSP 1 Score: 55.1 bits (131), Expect = 2.370e-7
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSNADREDGLLVG 126
            L +   VAGVTFLAFGNGAPDVFSA  A+T   D + GL +G
Sbjct:  133 LKLSDNVAGVTFLAFGNGAPDVFSAIAAITHAKDGDAGLAIG 174
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BLAST of mRNA_Ecto-sp13_S_contig68055.17748.1 vs. uniprot
Match: A0A8B7YRB0_ACAPL (mitochondrial sodium/calcium exchanger protein-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YRB0_ACAPL)

HSP 1 Score: 54.3 bits (129), Expect = 4.420e-7
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSNADREDGLLVG 126
            L +   VAGVTFLAFGNGAPD+FSA  A+T+  D   GL +G
Sbjct:  147 LKLNQSVAGVTFLAFGNGAPDIFSAIAAITNAKDGNAGLAIG 188
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BLAST of mRNA_Ecto-sp13_S_contig68055.17748.1 vs. uniprot
Match: UPI001BB2573C (mitochondrial sodium/calcium exchanger protein-like isoform X1 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2573C)

HSP 1 Score: 53.9 bits (128), Expect = 6.050e-7
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSNADREDGLLVG 126
            L +   +AGVT LAFGNGAPD+FSA  A+T+  D E GL +G
Sbjct:  149 LKLSQNIAGVTLLAFGNGAPDIFSAIAAITNARDGEAGLAIG 190
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BLAST of mRNA_Ecto-sp13_S_contig68055.17748.1 vs. uniprot
Match: A0A8J1XVU6_OWEFU (Ofus.G08430 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XVU6_OWEFU)

HSP 1 Score: 53.9 bits (128), Expect = 6.060e-7
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSNADREDGLLVG 126
            L + P VAGVTFLAFGNGA D+FSAF A  + +  + GL VG
Sbjct:  150 LGLSPNVAGVTFLAFGNGAADIFSAFAAFQATSGGDAGLAVG 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68055.17748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Z1_ECTSI8.400e-2396.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVK8_9PHAE2.910e-2294.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHX1_9STRA6.950e-1164.00Sodium/calcium exchanger protein-domain-containing... [more]
A0A8B7XNN8_ACAPL1.930e-864.29mitochondrial sodium/calcium exchanger protein-lik... [more]
A0A8J1TKN5_OWEFU9.260e-859.52Ofus.G04155 protein n=1 Tax=Owenia fusiformis TaxI... [more]
UPI001454E79B1.260e-761.90mitochondrial sodium/calcium exchanger protein-lik... [more]
UPI0018D660D32.370e-761.90mitochondrial sodium/calcium exchanger protein-lik... [more]
A0A8B7YRB0_ACAPL4.420e-759.52mitochondrial sodium/calcium exchanger protein-lik... [more]
UPI001BB2573C6.050e-757.14mitochondrial sodium/calcium exchanger protein-lik... [more]
A0A8J1XVU6_OWEFU6.060e-759.52Ofus.G08430 protein n=1 Tax=Owenia fusiformis TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68055contigEcto-sp13_S_contig68055:175..345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score94.7
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog2880.D7G0Z1
Model size171
KEGG koko:K13754
KEGG TC2.A.19.4.4
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000041,GO:0001101,GO:0003006,GO:0003674,GO:0003700,GO:0003712,GO:0005215,GO:0005384,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006355,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006828,GO:0006873,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008324,GO:0009314,GO:0009416,GO:0009628,GO:0009648,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009739,GO:0009740,GO:0009755,GO:0009791,GO:0009889,GO:0009987,GO:0010029,GO:0010033,GO:0010099,GO:0010228,GO:0010468,GO:0010476,GO:0010556,GO:0012505,GO:0012506,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015318,GO:0015672,GO:0016020,GO:0019219,GO:0019222,GO:0019725,GO:0022414,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030659,GO:0031090,GO:0031323,GO:0031326,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032870,GO:0033993,GO:0034220,GO:0034399,GO:0035725,GO:0042221,GO:0042592,GO:0043157,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0048518,GO:0048571,GO:0048573,GO:0048574,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048608,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051094,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051252,GO:0051716,GO:0055080,GO:0055082,GO:0055085,GO:0060255,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071370,GO:0071396,GO:0071421,GO:0071495,GO:0071804,GO:0071805,GO:0071944,GO:0080090,GO:0097305,GO:0097306,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098805,GO:0140110,GO:1900140,GO:1901700,GO:1901701,GO:1903506,GO:2000026,GO:2000030,GO:2000112,GO:2000306,GO:2001141
Exons1
EggNOG free text desc.calcium:sodium antiporter activity involved in regulation of cardiac muscle cell membrane potential
EggNOG OGsCOG0530@1,KOG2399@2759
Cds size165
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463935.628592-CDS-Ecto-sp13_S_contig68055:174..3391681463935.628592-CDS-Ecto-sp13_S_contig68055:174..339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68055 175..339 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463935.6514156-UTR-Ecto-sp13_S_contig68055:339..3451681463935.6514156-UTR-Ecto-sp13_S_contig68055:339..345Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig68055 340..345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68055.17748.1prot_Ecto-sp13_S_contig68055.17748.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68055 175..339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68055.17748.1

>prot_Ecto-sp13_S_contig68055.17748.1 ID=prot_Ecto-sp13_S_contig68055.17748.1|Name=mRNA_Ecto-sp13_S_contig68055.17748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MPPEVAGVTFLAFGNGAPDVFSAFVALTSNADREDGLLVGMGSLLGSSET
ELFL*
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mRNA from alignment at Ecto-sp13_S_contig68055:175..345-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68055.17748.1 ID=mRNA_Ecto-sp13_S_contig68055.17748.1|Name=mRNA_Ecto-sp13_S_contig68055.17748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68055:175..345- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGATATGCCGCCTGAAGTGGCCGGTGTGACTTTCCTGGCCTTTGGAAA
CGGAGCTCCCGACGTGTTCTCCGCCTTCGTCGCCCTGACGTCAAACGCGG
ATAGAGAAGATGGCCTGTTGGTCGGTATGGGTTCGCTGCTAGGATCAAGT
GAGACTGAGTTGTTCTTATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68055:175..345-

>mRNA_Ecto-sp13_S_contig68055.17748.1 ID=mRNA_Ecto-sp13_S_contig68055.17748.1|Name=mRNA_Ecto-sp13_S_contig68055.17748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68055:175..345- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCCTGAAGTGGCCGGTGTGACTTTCCTGGCCTTTGGAAACGGAGC
TCCCGACGTGTTCTCCGCCTTCGTCGCCCTGACGTCAAACGCGGATAGAG
AAGATGGCCTGTTGGTCGGTATGGGTTCGCTGCTAGGATCAAGTGAGACT
GAGTTGTTCTTATAG
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