mRNA_Ecto-sp13_S_contig680.17741.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig680.17741.1
Unique NamemRNA_Ecto-sp13_S_contig680.17741.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig680.17741.1 vs. uniprot
Match: D8LKZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ0_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 3.460e-70
Identity = 115/127 (90.55%), Postives = 118/127 (92.91%), Query Frame = 1 
Query:  130 MPECYPWCSVAGCTERPLRQYTAATSRQIMFMCKTHFNTVPLSTREGWKQYRGTRTFPETRIAASCRPGPTRGYSAAXXXXXXXXXXXXXXXXXSEVDPGYTNHPDDEKGNRGPTKSALWPGKVYNV 510
            MPECYPWCSVAGCTERPLRQYTAA+S+QIMFMCKTHFNTVPLSTREGWKQYRGTRTFPE+RIAASCRPGPTRG  AAXXXXXXXXXX       SEVDPGYTNHPDDEKGNRGPTKSALWPGKVYNV
Sbjct:    1 MPECYPWCSVAGCTERPLRQYTAASSKQIMFMCKTHFNTVPLSTREGWKQYRGTRTFPESRIAASCRPGPTRGLGAAXXXXXXXXXX-------SEVDPGYTNHPDDEKGNRGPTKSALWPGKVYNV 120
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BLAST of mRNA_Ecto-sp13_S_contig680.17741.1 vs. uniprot
Match: A0A6H5L718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L718_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.210e-42
Identity = 82/98 (83.67%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:  217 MFMCKTHFNTVPLSTREGWKQYRGTRTFPETRIAASCRPGPTRGYSAAXXXXXXXXXXXXXXXXXSEVDPGYTNHPDDEKGNRGPTKSALWPGKVYNV 510
            MFMCKT FNTVPLSTREGWKQYRGTRTFPE+RIAASCRPGPTRG+ AAXXXXXXX          SEVDPG+TNHPDDEKGNRGPT SALWPGKVYNV
Sbjct:    1 MFMCKTRFNTVPLSTREGWKQYRGTRTFPESRIAASCRPGPTRGHGAAXXXXXXX----------SEVDPGHTNHPDDEKGNRGPTNSALWPGKVYNV 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig680.17741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKZ0_ECTSI3.460e-7090.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L718_9PHAE2.210e-4283.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig680contigEcto-sp13_S_contig680:1..1630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size510
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_006080.1
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463934.7436614-CDS-Ecto-sp13_S_contig680:0..2971681463934.7436614-CDS-Ecto-sp13_S_contig680:0..297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig680 1..297 -
1681463934.7555532-CDS-Ecto-sp13_S_contig680:1417..16271681463934.7555532-CDS-Ecto-sp13_S_contig680:1417..1627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig680 1418..1627 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463934.7663307-UTR-Ecto-sp13_S_contig680:1627..16301681463934.7663307-UTR-Ecto-sp13_S_contig680:1627..1630Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig680 1628..1630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig680.17741.1prot_Ecto-sp13_S_contig680.17741.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig680 1..1627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig680.17741.1

>prot_Ecto-sp13_S_contig680.17741.1 ID=prot_Ecto-sp13_S_contig680.17741.1|Name=mRNA_Ecto-sp13_S_contig680.17741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp
MAHQLGSPLPGASPQPPQQQYHSSSSSSVHDMHQHQQQHNASMPECYPWC
SVAGCTERPLRQYTAATSRQIMFMCKTHFNTVPLSTREGWKQYRGTRTFP
ETRIAASCRPGPTRGYSAAAAVAAAAAAAAAAAAAASEVDPGYTNHPDDE
KGNRGPTKSALWPGKVYNV
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mRNA from alignment at Ecto-sp13_S_contig680:1..1630-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig680.17741.1 ID=mRNA_Ecto-sp13_S_contig680.17741.1|Name=mRNA_Ecto-sp13_S_contig680.17741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig680:1..1630- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGATGGCCCACCAGCTGGGATCCCCGCTCCCTGGGGCCTCGCCTCAGCC
GCCACAGCAGCAGTATCACAGCAGCAGCAGCAGCAGCGTCCACGACATGC
ACCAACACCAACAACAACACAACGCTAGTATGCCAGAGTGCTACCCATGG
TGCTCTGTCGCGGGGTGCACAGAGCGTCCTCTGCGGCAATACACGGCAGC
TACGAGCCGGCAGGTGCGCCTTCGGCGAGGGTTAGATGACCTGTTGGTGT
AGGCGTAGAGACGAGGTGCTACCTGCCTTCTATTTCATTGTAGTTGGCGT
ACCGTTAGTCTACTGCTACCGCTGGCTCCACCAACCGTCGGCATTGTTTT
TCTCACTCGTGCAACATTAGTCATCCCCGCCCACGCAATCCGCCATTCCG
CCGTTAGACTATTATTTGATCTCTCCCCCGCCTGTTGTGTACCCTGTATC
GGGGTGGTGCGTAAACATACTTCAACACAACACTTCTTAAAGTCGACATC
TACGGTTTCTTGAAGCACTCTGAATGATACTGTAAGATTGAGAGATTTCT
CCTTCTTGTTCTCGTCCCGCCTGCTGTAGACCTCCCAAGCAGTAGACTAC
ATGCGTAGACAATCCTTAGGCGCTATTACACTTGTACCACCTTTTTGGCA
AACAGTTACTGGTATAGTTTGAAGCATCCATGCTTCATTGCAAGGGTTTG
GTTGACGCACTACTGCTATAGCCGGGGTCACACTCACGAGGAATGAGGAA
TGAAAACGCTCTTGCTCGTCCTCGCATCGATCATGTACTACTGCTGTTAT
CGTCGTCGTGGCCTCACAGTACGACTACTTTGTAATTCTTCATGCATCAT
GTGTTGTTGCATTCTCTCATGGGCAAACGCACATGATATCGTTGTATGTC
TAATAGGGATGAGAAACATTAGCTATGGGAATGGAGAGGCACTGCCCGAG
CCATTGGGTCCCGCTGCCGCGAAATATGCTGGTGCACTGTAACGCCATCG
ATTCCCTCGAATGTAGAGAGAGCTGCAGAGCAGTATCACTGTTGTATCAT
CAAAGACGGGGTCCAAAAACTACGGCCACATGTTTAGCCGGGTAAGGACA
AGTGGCTCAACAAAGATAAGTGTGCATACCCTTTATGCATGACATTAACT
TTCGTTCTGATGCTCTTGGTCCTCTCTTTCGGCTATTCTAACTGCTGCCT
ACAAAAATGTCAACCCCGTGATTTTCGTGTCTTGGTTATCTCTCTTTCCG
ATAATTATTACAACTGTTGTATGTAAAACCGCAACTCCACCGTGCAACTG
ACTAATTCATCCCCCGGGTGCATGTGAATACAGATCATGTTCATGTGCAA
GACGCACTTTAACACCGTGCCCCTCAGCACCCGCGAGGGCTGGAAGCAGT
ACCGGGGCACCCGCACCTTTCCGGAGACGAGGATTGCCGCCTCTTGCAGA
CCGGGCCCGACCAGGGGCTACAGCGCCGCGGCGGCAGTGGCAGCGGCGGC
GGCGGCGGCGGCGGCCGCGGCGGCGGCAGCGAGCGAGGTGGACCCGGGGT
ACACGAACCACCCCGACGATGAGAAAGGCAACAGAGGGCCGACCAAGAGC
GCGCTGTGGCCGGGGAAGGTCTACAACGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig680:1..1630-

>mRNA_Ecto-sp13_S_contig680.17741.1 ID=mRNA_Ecto-sp13_S_contig680.17741.1|Name=mRNA_Ecto-sp13_S_contig680.17741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig680:1..1630- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCACCAGCTGGGATCCCCGCTCCCTGGGGCCTCGCCTCAGCCGCC
ACAGCAGCAGTATCACAGCAGCAGCAGCAGCAGCGTCCACGACATGCACC
AACACCAACAACAACACAACGCTAGTATGCCAGAGTGCTACCCATGGTGC
TCTGTCGCGGGGTGCACAGAGCGTCCTCTGCGGCAATACACGGCAGCTAC
GAGCCGGCAGATCATGTTCATGTGCAAGACGCACTTTAACACCGTGCCCC
TCAGCACCCGCGAGGGCTGGAAGCAGTACCGGGGCACCCGCACCTTTCCG
GAGACGAGGATTGCCGCCTCTTGCAGACCGGGCCCGACCAGGGGCTACAG
CGCCGCGGCGGCAGTGGCAGCGGCGGCGGCGGCGGCGGCGGCCGCGGCGG
CGGCAGCGAGCGAGGTGGACCCGGGGTACACGAACCACCCCGACGATGAG
AAAGGCAACAGAGGGCCGACCAAGAGCGCGCTGTGGCCGGGGAAGGTCTA
CAACGTC
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