prot_Ecto-sp13_S_contig68.17740.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig68.17740.1
Unique Nameprot_Ecto-sp13_S_contig68.17740.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length308
Homology
BLAST of mRNA_Ecto-sp13_S_contig68.17740.1 vs. uniprot
Match: D8LBV1_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV1_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 6.810e-129
Identity = 266/300 (88.67%), Postives = 270/300 (90.00%), Query Frame = 0
Query:   16 LGSDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDIGGGKTARSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXX-----TFLNKTMHASXXXXXXXXXXXXXXXSPLAGRRIRPLFDAGGASYSSSASPSTSIPTATTTTGAGTAHLLRKSGVFSDKRRDGGGAXXXXXXXXA---RMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENREGGGGNXXXXXXXXKAGLFSF 307
            L SDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDD+GGGKTARSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXX      FLNKTMHAS        XXXXXX SPL G+RIRPLFDAGGASYSSSA+ STSIPTATT  GAGTAH LRKSGVF DK+RDGG  XXXXXXXX    RMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENR GGGG XXXXXXXXKAGLFSF
Sbjct:   20 LVSDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDVGGGKTARSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMSKRKAEGXXXXXXASPLPGQRIRPLFDAGGASYSSSAATSTSIPTATTAAGAGTAHALRKSGVFPDKKRDGGXXXXXXXXXXXXXXRMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRGGGGGKXXXXXXXXKAGLFSF 319          
BLAST of mRNA_Ecto-sp13_S_contig68.17740.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 1.050e-110
Identity = 251/295 (85.08%), Postives = 253/295 (85.76%), Query Frame = 0
Query:    1 AAGSGDAGXXXXXXXLGSDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDIGGGKTARSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXX-----TFLNKTMHASXXXXXXXXXXXXXXXSPLAGRRIRPLFDAGGASYSSSASPS-TSIPTATTTTGAGTAHLLRKSGVFSDKRRDGGGAXXXXXXXX---ARMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENR 286
            AAGSGD  XXXXXXXLGSDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDD+GGGK+ARSVGGDG XXXXXXXXXXXXXXXXXXXXXXXXX      FLNKTMHAS   XXXXXXXXXXXX        R LFDAGG SY S AS S TSIPTATT TGAGTAH LRKSGV SD  RDGGGA           ARMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENR
Sbjct:  340 AAGSGDXXXXXXXXXLGSDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDVGGGKSARSVGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMRKXXXXXXXXXXXXXXXXXXXXRLLFDAGGDSYPSCASSSSTSIPTATTATGAGTAHPLRKSGVLSDTNRDGGGAGVGRAGVGGAAARMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENR 634          
BLAST of mRNA_Ecto-sp13_S_contig68.17740.1 vs. uniprot
Match: A0A4P9VUV8_9FUNG (G-patch domain-containing protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9VUV8_9FUNG)

HSP 1 Score: 72.8 bits (177), Expect = 8.090e-11
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0
Query:   17 GSDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDH 73
            GSD   FGDWE HTKG GSR+M +MGYR G GLG+  +GI RPV +R+L   + L H
Sbjct:  145 GSDGTPFGDWEAHTKGIGSRLMLKMGYRMGSGLGRHAEGIVRPVEVRILSSGKGLGH 201          
BLAST of mRNA_Ecto-sp13_S_contig68.17740.1 vs. uniprot
Match: A0A0D9VM24_9ORYZ (G-patch domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VM24_9ORYZ)

HSP 1 Score: 72.8 bits (177), Expect = 1.180e-10
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 0
Query:   18 SDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRV-----DDIGGGKTARSVGGDGK 93
            SD  +F  WE HT+G  S+MM +MGYR G GLG   QG+  P+P++VLP +++LDH        D +G GK  RS GG  K
Sbjct:  288 SDTVIFAKWENHTRGVASKMMAKMGYREGMGLGVSGQGMVDPIPVKVLPPKQSLDHAVAASEVNDSVGSGKK-RSRGGKRK 367          
BLAST of mRNA_Ecto-sp13_S_contig68.17740.1 vs. uniprot
Match: UPI001F5D34AA (zinc finger CCCH domain-containing protein 18-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D34AA)

HSP 1 Score: 70.9 bits (172), Expect = 5.180e-10
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 0
Query:   18 SDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDIG--GGKTAR 86
            S+  +F  WEQHT+G  S+MM +MGYR G GLG   QG+  P+P++VLP +++LDH      G  GG  AR
Sbjct:  291 SETLIFAKWEQHTRGIASKMMAKMGYREGMGLGIYGQGMVDPIPVKVLPPKQSLDHALAPTAGEDGGSKAR 361          
BLAST of mRNA_Ecto-sp13_S_contig68.17740.1 vs. uniprot
Match: A0A3L6ETS4_MAIZE (Zinc finger CCCH domain-containing protein 18 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6ETS4_MAIZE)

HSP 1 Score: 70.1 bits (170), Expect = 5.200e-10
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 0
Query:   18 SDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVD---DIGGGKTARSVGGDGK 93
            +D  +F  WE HT+G  S+MM +MGYR G GLG   QG+  P+P++VLP +++LDH       D G GK  RS GG  K
Sbjct:  118 TDTMIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALASSEADGGSGKK-RSRGGKRK 195          
BLAST of mRNA_Ecto-sp13_S_contig68.17740.1 vs. uniprot
Match: I1IDD7_BRADI (Uncharacterized protein n=3 Tax=Brachypodium distachyon TaxID=15368 RepID=I1IDD7_BRADI)

HSP 1 Score: 70.5 bits (171), Expect = 6.960e-10
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0
Query:   18 SDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDH 73
            S+  +F  WEQHT+G  S+MM RMGYR G GLG   QG+  P+P++VLP +++LDH
Sbjct:  294 SETVIFAKWEQHTRGVASKMMARMGYREGMGLGVSGQGMVDPIPVKVLPPKQSLDH 349          
BLAST of mRNA_Ecto-sp13_S_contig68.17740.1 vs. uniprot
Match: J3LHX4_ORYBR (G-patch domain-containing protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LHX4_ORYBR)

HSP 1 Score: 69.3 bits (168), Expect = 8.800e-10
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 0
Query:   18 SDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRV-----DDIGGGKTARSVGGDGK 93
            ++  +F  WE HT+G  S+MM +MGYR G GLG   QG+  P+P++VLP +++LDH        D +G GK  RS GG  K
Sbjct:  102 TETAIFAKWEHHTRGVASKMMAKMGYREGMGLGASGQGMLDPIPVKVLPPKQSLDHAVAASEVNDSVGPGKK-RSRGGKRK 181          
BLAST of mRNA_Ecto-sp13_S_contig68.17740.1 vs. uniprot
Match: B4FAY0_MAIZE (Zinc finger CCCH domain-containing protein 22 n=7 Tax=Andropogoneae TaxID=147429 RepID=B4FAY0_MAIZE)

HSP 1 Score: 70.1 bits (170), Expect = 9.220e-10
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 0
Query:   18 SDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVD---DIGGGKTARSVGGDGK 93
            +D  +F  WE HT+G  S+MM +MGYR G GLG   QG+  P+P++VLP +++LDH       D G GK  RS GG  K
Sbjct:  292 TDTMIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALASSEADGGSGKK-RSRGGKRK 369          
BLAST of mRNA_Ecto-sp13_S_contig68.17740.1 vs. uniprot
Match: A0A3L6RNK1_PANMI (Zinc finger CCCH domain-containing protein 18 n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6RNK1_PANMI)

HSP 1 Score: 69.7 bits (169), Expect = 1.190e-9
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 0
Query:   18 SDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRV-----DDIGGGKTARSVGGDGK 93
            +D  +F  WE HT+G  S+MM +MGYR G GLG   QG+  P+P++VLP +++LDH          IG GK  RS GG  K
Sbjct:  293 TDTVIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALAASEAGGSIGSGKK-RSRGGKRK 372          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68.17740.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBV1_ECTSI6.810e-12988.67G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KPC0_9PHAE1.050e-11085.08Zinc finger CCCH-type with G patch domain-containi... [more]
A0A4P9VUV8_9FUNG8.090e-1157.89G-patch domain-containing protein (Fragment) n=1 T... [more]
A0A0D9VM24_9ORYZ1.180e-1046.91G-patch domain-containing protein n=1 Tax=Leersia ... [more]
UPI001F5D34AA5.180e-1047.89zinc finger CCCH domain-containing protein 18-like... [more]
A0A3L6ETS4_MAIZE5.200e-1046.84Zinc finger CCCH domain-containing protein 18 n=1 ... [more]
I1IDD7_BRADI6.960e-1053.57Uncharacterized protein n=3 Tax=Brachypodium dista... [more]
J3LHX4_ORYBR8.800e-1044.44G-patch domain-containing protein n=1 Tax=Oryza br... [more]
B4FAY0_MAIZE9.220e-1046.84Zinc finger CCCH domain-containing protein 22 n=7 ... [more]
A0A3L6RNK1_PANMI1.190e-945.68Zinc finger CCCH domain-containing protein 18 n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 255..275
NoneNo IPR availablePANTHERPTHR46297FAMILY NOT NAMEDcoord: 21..286
IPR000467G-patch domainSMARTSM00443G-patch_5coord: 28..74
e-value: 1.1E-9
score: 48.1
IPR000467G-patch domainPFAMPF01585G-patchcoord: 30..70
e-value: 2.8E-12
score: 46.3
IPR000467G-patch domainPROSITEPS50174G_PATCHcoord: 30..76
score: 13.16

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68contigEcto-sp13_S_contig68:33903..36595 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68.17740.1mRNA_Ecto-sp13_S_contig68.17740.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig68 33903..36595 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig68.17740.1 ID=prot_Ecto-sp13_S_contig68.17740.1|Name=mRNA_Ecto-sp13_S_contig68.17740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
AAGSGDAGGGNGGGGLGSDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLG
KEKQGISRPVPIRVLPERRTLDHLRVDDIGGGKTARSVGGDGKKKKKKKK
DNNNNKPGGSNGGGGGMFTFLNKTMHASMRKRRAEGGGAAAAASPLAGRR
IRPLFDAGGASYSSSASPSTSIPTATTTTGAGTAHLLRKSGVFSDKRRDG
GGAGAGGAGAAARMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEEL
DPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENREGGGGNGGGRKGGG
KAGLFSF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000467G_patch_dom