mRNA_Ecto-sp13_S_contig68.17734.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68.17734.1
Unique NamemRNA_Ecto-sp13_S_contig68.17734.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68.17734.1 vs. uniprot
Match: A0A6H5KQ50_9PHAE (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ50_9PHAE)

HSP 1 Score: 608 bits (1567), Expect = 4.310e-218
Identity = 294/301 (97.67%), Postives = 297/301 (98.67%), Query Frame = 3 
Query:  162 EQKSSHASRSHARFEVKAAGWDDKPIVKGTTETIRAWIVNQPWWTPPLDGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVTTAAVELTGPGQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGMLEDLSVDRIGFSKGEGEDGAFGTGREFTLLAATCVRKAEGAEQREARRNSIAGDLRDGCLACNRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFVDLKRLR 1064
            E++SS  SRSHARFEVKAAGWDDKPIVKGTTETIRAWIVNQPWWTPPLDGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVTT AVELTGPGQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGMLEDLSVDRIGFSKGEGEDGAFGTGREFTLLAATCVRKAEGAEQREARR+SIAGDL DGCLACNRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFVDLKRLR
Sbjct:    5 EKESSPTSRSHARFEVKAAGWDDKPIVKGTTETIRAWIVNQPWWTPPLDGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVTTVAVELTGPGQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGMLEDLSVDRIGFSKGEGEDGAFGTGREFTLLAATCVRKAEGAEQREARRSSIAGDLSDGCLACNRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFVDLKRLR 305
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BLAST of mRNA_Ecto-sp13_S_contig68.17734.1 vs. uniprot
Match: A0A812PF38_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812PF38_9DINO)

HSP 1 Score: 115 bits (287), Expect = 4.110e-26
Identity = 77/207 (37.20%), Postives = 107/207 (51.69%), Query Frame = 3 
Query:  201 FEVKAAGWDDKPIVKGTTETIR--AWIVNQ----PWWTPPLD--GPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVTTAAVELTGP-GQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGMLEDLSVDRIGFSKGEGE 794
            F+ +A  WD       T E ++  AW+ +Q    PW+    +  G  LDFGCGTG L+  L+D     VTG+D S  ML+    K E  G+++  V   GP   LG     SF    S L +HHIRDC+  +S LA +L P +GR+V+ D EAT++A  FH      G+  EH G+    L  W  S+G L+ + V R+ F K   E
Sbjct:   32 FDARATSWD-------TPEKLQRVAWVGDQIRGRPWFRHGSEAMGRCLDFGCGTGLLSFELKDSCSH-VTGLDASSGMLKVMQEKIETAGLSSKMVATQGPLNVLG-----SFDTIVSLLCIHHIRDCKAQLSELATHLSP-TGRIVVIDFEATQNARLFHKKSETRGDHYEHDGLEADALHGWLTSAG-LQSVEVHRVPFEKARAE 223
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BLAST of mRNA_Ecto-sp13_S_contig68.17734.1 vs. uniprot
Match: UPI001FAE929D (class I SAM-dependent methyltransferase n=2 Tax=unclassified Geothrix TaxID=2647902 RepID=UPI001FAE929D)

HSP 1 Score: 97.8 bits (242), Expect = 3.460e-20
Identity = 73/194 (37.63%), Postives = 99/194 (51.03%), Query Frame = 3 
Query:  198 RFEVKAAGWD--DKPIV--KGTTETIRAWIVNQPWWTPPLDGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVTTAAVELTGPGQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGMLEDLSVDR 767
            RF+  AA WD  D+ +V  +  T  I   +  +P W        LDFG GTG +T+AL   +G  +TG DTS  ML Q   KA   G+      L G G LG   D    L  SS+TLHH+ D    +  LA +L PG GR+ L DLE  + +  FH  D    + + H G   +D+ AW E++G L D++V R
Sbjct:    6 RFDAAAATWDQEDRRVVLAREVTAAILDRVRPEPSWR------ALDFGAGTGLVTLALAPHVGR-MTGADTSEGMLAQLAAKAGALGLPVEVRRLDGAGDLGGPYD----LIVSSMTLHHVVDVPALLVQLARHLAPG-GRIALADLEPEDGS--FHGED---ASDVHHLGFEPADIAAWLEAAG-LRDVAVAR 181
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BLAST of mRNA_Ecto-sp13_S_contig68.17734.1 vs. uniprot
Match: A0A1V4ZHF4_9EURY (Methyltransf_25 domain-containing protein n=2 Tax=unclassified Methanoregula TaxID=2649730 RepID=A0A1V4ZHF4_9EURY)

HSP 1 Score: 98.2 bits (243), Expect = 5.590e-20
Identity = 65/182 (35.71%), Postives = 95/182 (52.20%), Query Frame = 3 
Query:  201 FEVKAAGWDDKPIVKGTTETIRAWIVNQPWWTPPLDGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVTTAAVELTGPGQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGML 746
            F+ +AA WD +P      + +   I      TP +D   LDFGCGTG LT+ L+  L  S+TGVD+S+ ML  FD K   +G+T A        + G+  D  + L  SS+T HHIRD    +  +AG LRP SG++ + DL+   D  KFH ++  +     H G   S ++   E+ G +
Sbjct:   36 FDAEAATWDSEPGRVKLADDVAQAIRGMVSLTPEMD--VLDFGCGTGLLTLHLQP-LVRSITGVDSSQGMLAVFDGKIRKQGITNARTRFADLNK-GDMPDGRYDLVISSMTFHHIRDIPHLLKMMAGVLRP-SGQIAVIDLDP--DGGKFHSSNAGVF----HFGFERSVMKDLLEAEGFV 206
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BLAST of mRNA_Ecto-sp13_S_contig68.17734.1 vs. uniprot
Match: A0A261XYZ4_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XYZ4_9FUNG)

HSP 1 Score: 94.7 bits (234), Expect = 9.510e-19
Identity = 69/200 (34.50%), Postives = 95/200 (47.50%), Query Frame = 3 
Query:  198 RFEVKAAGWDDKPIVKGTTETIRAWIVNQPWWTPPLDGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVTTAAVELTG-------------PGQL-GEGADDS---FALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGML 746
            RF+  A  WDD+P V+ TT      I+   +   P     ++FGCGTG L+M L   + +SV GVD S  M++ F RK     + T A EL               PGQL G G  D    F +  + L  HHI D +     L  YLRP  GRL++ D E T  +  FHP+     + +EHHGI ++ L      +G+ 
Sbjct:   13 RFDDMAESWDDRPDVRETTHHAYEAILKSGYPFDPNATSVMEFGCGTGMLSMKLAPHI-KSVLGVDASEGMIKVFSRKIAN--LPTTAPELVSKFPYKPQSIFLERPGQLAGLGGTDGSGLFDIIVTHLAYHHIEDLQSMTDLLVQYLRP-HGRLLISDFEQTFTSKYFHPSSH--WHDVEHHGIDKNALHTILTRAGLF 206
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BLAST of mRNA_Ecto-sp13_S_contig68.17734.1 vs. uniprot
Match: A7I702_METB6 (Methyltransferase type 11 n=1 Tax=Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8) TaxID=456442 RepID=A7I702_METB6)

HSP 1 Score: 91.3 bits (225), Expect = 9.430e-18
Identity = 75/222 (33.78%), Postives = 110/222 (49.55%), Query Frame = 3 
Query:  201 FEVKAAGWDDKP-IVKGTTETIRAWIVNQPWWTPPLDGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRK--AEGRGVTTAAVELTGPGQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGMLEDLSVDRIGFSKGEGEDGAFGTGREFTLLAATCVRKA 857
            F+  AA WD+ P  VK   +  RA    +    P  +   LDFGCGTG L++AL   +  SVT VD+SR ML+  D+K  A+G  + TA V+L    + G+       L  SS+T HH+RD    +  +A  LRPG GR+ + DL++ E   KFH +       + H+G     ++ + E++G     +       K     GA G  R FT+   T  +KA
Sbjct:    8 FDAAAATWDENPGRVKMAQDVARAI---RETTKPGPETEVLDFGCGTGLLSLALLPGV-RSVTAVDSSRGMLDVLDKKIAAQGLAMRTALVDL----EKGDKLPGPVDLVTSSMTFHHLRDPVPVLVEMARILRPG-GRIAIADLDSDEG--KFHDSS----EGVFHNGFDRCTMQKYFEAAGFTAVQNRTAAVMHK----TGADGKTRTFTIFLMTAQKKA 210
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BLAST of mRNA_Ecto-sp13_S_contig68.17734.1 vs. uniprot
Match: A0A3A2IYZ4_9GAMM (Class I SAM-dependent methyltransferase n=1 Tax=Methylococcales bacterium TaxID=2304002 RepID=A0A3A2IYZ4_9GAMM)

HSP 1 Score: 90.9 bits (224), Expect = 1.110e-17
Identity = 68/190 (35.79%), Postives = 93/190 (48.95%), Query Frame = 3 
Query:  198 RFEVKAAGWD--DKPIV--KGTTETI--RAWIVNQPWWTPPLDGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVTTAAVELTGPGQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGMLE 749
            RF+  A  WD  D+ ++  +G TE I  RA + N        D   LDFGCGTG +T+AL   +G S+TG DTS  MLE    KA  +G+      L   G    G    + L  SS+TLHH+ D        A +LRPG GR+ L DL+A +    FH    E    + H+G     ++ W E +G  +
Sbjct:    6 RFDKAAPTWDLVDRRVLLARGVTEAIIARASLSN--------DQEVLDFGCGTGLVTLALGPVVG-SITGADTSTGMLETIAEKARSQGIAVPLRHLGADGSADLGGP--YDLIVSSMTLHHVADVPALFRRFAQHLRPG-GRVALADLDAEDGT--FH----EDATGVHHNGFSRDQVKDWLEVAGFAK 177
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BLAST of mRNA_Ecto-sp13_S_contig68.17734.1 vs. uniprot
Match: A0A2N2GHF4_9DELT (SAM-dependent methyltransferase n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6 TaxID=2013756 RepID=A0A2N2GHF4_9DELT)

HSP 1 Score: 90.9 bits (224), Expect = 1.270e-17
Identity = 72/214 (33.64%), Postives = 105/214 (49.07%), Query Frame = 3 
Query:  201 FEVKAAGWDDKPIVKGTTETIRAWIVNQPWWTPPLDGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVTTAAVELTGPGQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGMLEDLSVDRIGFSKGEGEDGAFGTGREFTLLAAT 842
            F+  AA WD  P        I   I+        +D   LDFGCGTG L +AL+  L  ++TGVD+SR ML+ F RK   RG+T  + +     Q G+    S+ L  SS+TLHHI++ +  +      LRP SG L + DL+A  +  +FHP +    + + H G    ++R     +G   D+ V +    +   EDGA    R FT+   T
Sbjct:    8 FDQDAALWDQNPGRVKVAADIAQTIIRAVHPDSTMD--VLDFGCGTGLLALALQP-LVHAITGVDSSRGMLDVFHRKISDRGLTNVSAQYLDLDQ-GDVLTGSYHLVVSSMTLHHIKNVDSLLRQFHQILRP-SGMLCIADLDA--EGGRFHPDN----DGVFHFGFDREEMRRLFAQAGF-HDIRVTQAAQVEKPVEDGAM---RLFTIFLIT 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig68.17734.1 vs. uniprot
Match: A0A7C8EZ75_DESBX (Class I SAM-dependent methyltransferase n=1 Tax=Desulfuromonadales bacterium TaxID=2099678 RepID=A0A7C8EZ75_DESBX)

HSP 1 Score: 90.5 bits (223), Expect = 1.530e-17
Identity = 75/186 (40.32%), Postives = 100/186 (53.76%), Query Frame = 3 
Query:  201 FEVKAAGWDDKPI-VKGTTETIRAWIVNQPWWTPPLDGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVT---TAAVELTGPGQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGML 746
            F+  A  WD++P  VK  TE   A I N    +   D   +D GCGTG +T+ L   +G S+TG+D+S AMLEQ   K +  G T   TA  +L+  GQL EG    F L  S++TLHHI+D E  +S+L   L PG G + L DLEA + +  FH    E    + HHG   + L    ESSG +
Sbjct:    7 FDKVAGSWDEEPRRVKVATEIATA-IKNTLSLSTGWDA--MDIGCGTGLVTVELAPYVG-SITGIDSSCAMLEQLGEKVKASGNTNIKTALCDLSA-GQLPEG---KFHLIVSAMTLHHIKDPETLLSSLISRLYPG-GWIALADLEAEDGS--FH----EDPTGVFHHGFSRTALTTLLESSGYV 177
[Close]
BLAST of mRNA_Ecto-sp13_S_contig68.17734.1 vs. uniprot
Match: A0A7Y7TGF5_DESBX (Class I SAM-dependent methyltransferase n=1 Tax=Desulfuromonadales bacterium TaxID=2099678 RepID=A0A7Y7TGF5_DESBX)

HSP 1 Score: 87.4 bits (215), Expect = 1.990e-16
Identity = 67/194 (34.54%), Postives = 96/194 (49.48%), Query Frame = 3 
Query:  201 FEVKAAGWDDKP----IVKGTTETIRAWIVNQPWWTPPLDGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVTTAAVELTGPGQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGMLEDLSVDRI 770
            F+  AA WD+KP    + +   + I   +     W        +DFGCGTG +T++L   LG S+ G+D+S  M+E+ + KA  +G T A  E     + GE  D  + L  SS+T+HHI D    +SAL   L+PG GR+ L DLE TED   FH    E    + HHG            +G   D+S+  +
Sbjct:    7 FDCAAAEWDEKPRRVKLAQDIADAISVALPLSRTWN------AMDFGCGTGLVTLSLAPHLG-SILGIDSSGKMVERLNAKAVEQGCTNARGERLDL-ERGELPDGRYHLITSSMTMHHIPDIVPLLSALRSLLQPG-GRVALADLE-TEDG-SFH----EDLTGVFHHGFNREQFTDLLSRAGF-SDISISTV 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68.17734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ50_9PHAE4.310e-21897.67Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A812PF38_9DINO4.110e-2637.20Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
UPI001FAE929D3.460e-2037.63class I SAM-dependent methyltransferase n=2 Tax=un... [more]
A0A1V4ZHF4_9EURY5.590e-2035.71Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A261XYZ4_9FUNG9.510e-1934.50Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
A7I702_METB69.430e-1833.78Methyltransferase type 11 n=1 Tax=Methanoregula bo... [more]
A0A3A2IYZ4_9GAMM1.110e-1735.79Class I SAM-dependent methyltransferase n=1 Tax=Me... [more]
A0A2N2GHF4_9DELT1.270e-1733.64SAM-dependent methyltransferase n=1 Tax=Deltaprote... [more]
A0A7C8EZ75_DESBX1.530e-1740.32Class I SAM-dependent methyltransferase n=1 Tax=De... [more]
A0A7Y7TGF5_DESBX1.990e-1634.54Class I SAM-dependent methyltransferase n=1 Tax=De... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68contigEcto-sp13_S_contig68:11823..17136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score94.4
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog554065.XP_005846984.1
Model size1206
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004395,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009058,GO:0009108,GO:0009987,GO:0010420,GO:0016020,GO:0016740,GO:0016741,GO:0019866,GO:0019898,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032259,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663
Exons7
EggNOG free text desc.hexaprenyldihydroxybenzoate methyltransferase activity
EggNOG OGsCOG2227@1,KOG1270@2759
Cds size1062
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68.17734.1prot_Ecto-sp13_S_contig68.17734.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68 11828..16997 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463934.3567355-UTR-Ecto-sp13_S_contig68:11822..118271681463934.3567355-UTR-Ecto-sp13_S_contig68:11822..11827Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig68 11823..11827 +
1681463934.4536955-UTR-Ecto-sp13_S_contig68:16997..171361681463934.4536955-UTR-Ecto-sp13_S_contig68:16997..17136Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig68 16998..17136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463934.3697982-CDS-Ecto-sp13_S_contig68:11827..121061681463934.3697982-CDS-Ecto-sp13_S_contig68:11827..12106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 11828..12106 +
1681463934.3862166-CDS-Ecto-sp13_S_contig68:13309..133521681463934.3862166-CDS-Ecto-sp13_S_contig68:13309..13352Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 13310..13352 +
1681463934.398985-CDS-Ecto-sp13_S_contig68:13920..140601681463934.398985-CDS-Ecto-sp13_S_contig68:13920..14060Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 13921..14060 +
1681463934.4102533-CDS-Ecto-sp13_S_contig68:14480..146841681463934.4102533-CDS-Ecto-sp13_S_contig68:14480..14684Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 14481..14684 +
1681463934.4220967-CDS-Ecto-sp13_S_contig68:15276..155051681463934.4220967-CDS-Ecto-sp13_S_contig68:15276..15505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 15277..15505 +
1681463934.4348533-CDS-Ecto-sp13_S_contig68:16026..161441681463934.4348533-CDS-Ecto-sp13_S_contig68:16026..16144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 16027..16144 +
1681463934.4447532-CDS-Ecto-sp13_S_contig68:16948..169971681463934.4447532-CDS-Ecto-sp13_S_contig68:16948..16997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 16949..16997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68.17734.1

>prot_Ecto-sp13_S_contig68.17734.1 ID=prot_Ecto-sp13_S_contig68.17734.1|Name=mRNA_Ecto-sp13_S_contig68.17734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=354bp
MQKKENRRLPQQFPEIKQFRRRITDCSICLSPLRPTPSDSMSATALTRDR
TNEQKSSHASRSHARFEVKAAGWDDKPIVKGTTETIRAWIVNQPWWTPPL
DGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVTT
AAVELTGPGQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSG
RLVLFDLEATEDAHKFHPADFELGNQLEHHGIRESDLRAWCESSGMLEDL
SVDRIGFSKGEGEDGAFGTGREFTLLAATCVRKAEGAEQREARRNSIAGD
LRDGCLACNRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFVDLK
RLR*
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mRNA from alignment at Ecto-sp13_S_contig68:11823..17136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68.17734.1 ID=mRNA_Ecto-sp13_S_contig68.17734.1|Name=mRNA_Ecto-sp13_S_contig68.17734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5314bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68:11823..17136+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGTATGCAGAAAAAAGAAAACCGGCGCCTACCACAGCAGTTTCCAGAG
ATAAAACAGTTCCGGCGGCGCATAACCGACTGTTCCATTTGTCTGTCTCC
CCTCCGCCCCACTCCCTCCGACTCCATGTCGGCTACTGCTTTAACCCGTG
ATCGCACGAACGAACAGAAATCGTCTCATGCCAGCAGGAGCCATGCGCGG
TTCGAGGTGAAGGCGGCCGGCTGGGACGACAAGCCTATCGTCAAAGGAAC
CACGGAGACGATCAGGGCCTGGATCGTTAATCAGGTACAACAATCATGAT
ACACAAGTATGTTAACCGTTATTTTATCATCTGGACGGCGCCTCTTGGTC
CCCCACGGAAAACCGTACGCGAGCAAGGCGTGCCCCCGCCTGATGTGGTT
GCAGAGGACGAACGGTGGGTAGGGGGTCTGTCCGCCATCGATATTGTGTG
TGTGTGTGTTGTCCCCCCATGGTCTGGACGTCAGGTCTGACGCGTTTCGG
TATGTTTTCTGGACCCATTGGCCAGGGTCTCAGCGGAAAGGAATGCATGG
GGTATACAGTATGTTGCAAGAGGGCTTTGAGGGTCTCGCGAGCGAGGGGC
ACGGAACACGAAATCAACAAGATACAGGAAAGAACGAACCCGGATATCTC
GCACACCGCGGCCACGGTGGCTTGGTGCACCTTGGGGTTGCGTCAACAAG
GAAGGATGTGATTTTTTTCTGGTTGTGCGAACCTTCCTTTCAAGAGTATC
CGGTAGTTGGCGTGCTGGTAGCTTGAAGAACTTGGGAGGCAGTGTAGCGC
AGGCTATGTGGTGTGTGCGGCAAGCGACAACGAACGAATCTTTGCAGCGG
CAGTAGGCGCATGCCGCCGACCGCATGGACACGAGCGGAGACAAGACGAT
GCGGCAACCCTGCGGTAAAGGATCGACGTGAGATCTATCTCCGGTCTTGC
CTCTGAGACAGACCTCATCTTTCTGTGGTGCTTTCCTACGTACGTATTGA
CGTGGAAGAGAGATGGTGTCGGCGGCTTTGGTGCCCAGTTGAACGTTTTC
GTCTATTATACGTGCACATAACCAGCCAGCAACTCTCGTTTTTTACAAGA
TGATGTTGGTCGCAACAAAAATCGCGCCCGCTTCCCGTCCGTCAAGTCAA
TTTCCGACTGCTTACCTTACCTCACCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCTTCTTTGGCTCACC
CCCGCCAACATACAACCTACCAACTACGAACTACCCCCCCGCGCGCACAC
NNNNNNNNNNTTTTTTTTATTTTGATGTTGTAGACGAAAAAAATCTCCCC
CCCCCCCCCCCCCGCTCCCCATCTCCCACTTCCTTCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCGCCGGCCCGCCCGCCCCCTCATGCCTCTCGT
AAATGTGTTGGACACATCGACGGAACTATAAACCAAGCCTTGGTGGACGC
CACCCCTGGACGGACCCACACTAGACTTCGGTGAGTCAGCCGTCGATCGC
ACCGGAAGTGTGGGGGGTGGAGGGGTATGGCTGTTGTTGTACTTGTTTTG
CATGGAGTCGCGTTGATGACGTCGTACGGGACAGGGTACACGAGGTCAAA
CGTGATGGTAATGGTGATCAATGGGGTGTGAGGCGGTGGTTCTCCGGACG
TGCCGCGTTTGCTAGTGTCAGGCAGGGGTAAGAGTGTGACACACTGGTGC
ATGGTGAATGCTGCCGATGCCCTCTGTCAAAAGGGGGTGGACAACAACGT
TGAGTGCTTGGCTTGACCCCTTTGCCTACAGTACTCGAACACTAGGTTTT
TGAGAGAGAGAGGGATGACGTGTCGTGGTTGTGTACTAACGCATTCGATA
TTTCACAAGAGGATAATTAATTATTTCTATGCCCCCCCCGTCCCATCTAT
CTCCAACGAGCCCGGCCCAAAAAGTGCCGGCATTGTGGTACTATGATTCT
TACCTCCCGCCCCCGCTCTCCCTTCCGCATCTACCCCCAACCCCCGCCCA
AAAAATGCCGGCACTATGACACTATGATACTTGTCATCTGTCTGTCAGGC
TGCGGCACGGGGTGCCTGACGATGGCTCTTAGGGACGACCTTGGCGAGTC
TGTGACCGGGGTGGATACGAGCAGGGCAATGCTGGAGCAGTTCGACCGGA
AGGCGGAGGGTCGGGGCGTCACCACCGCCGCCGTTGAGGTCAGGCCTGAT
TCTTATGGAAGAACACTTTTTTTTTTTTTCGTGTTTGGGGTTGTTTGCCG
TCGTTTTGCAGAGCAAGGTGTCTCCGTCTGCGCGAGCCCAACCCACCCTT
CAGCGTTTGTCGTCATCGAAAATCATGCCTGGTATATATGTGCTTTATAA
ATTACGGTGTGCGTTCAACGGTTAAGAGAGGTACGACGACGTAGGGTGGT
CGTGCTATTGTTGGAGACGGGTGCGACTGGACGAAAGCCGGGGGGTGGGA
GACGGCTCCCTCTTCCCCCCTGGTCTTCGGCCTCCTCCTCACCTGTGCAT
GATGGAGGCGTAAAAGGTACCCAGATGTAGTAGCAACAACCAGTTCTAGC
GACAGCATTTGCAACAACAGCAACAACAACATACGCTTCCAATGATAAAT
CCCAACAGCTGACGGGGCCGGGGCAGCTGGGGGAGGGCGCGGACGACTCC
TTCGCCCTGGCCTACAGCAGCCTCACCTTGCACCACATCAGAGATTGCGA
GCGTACCGTTTCGGCGCTGGCGGGATACCTCCGCCCTGGGTCCGGTCGTC
TGGTGCTGTTCGACCTGGAGGCTACAGAGGACGCCCACAAGTTTCACCCG
GCAGACTTCGAGGTGGGTGTCTTGGGGGGGGGGGGGGGGGGGGGGGGGTC
GTCCTCTAATGTATTGCATGCCTTTGCGGGTAGACCATTGACCACGCGTC
CTCGAGAGGACGGACCATTGTTCCCACGGGACCAATCACCCACTCAAGAA
TGTTTTCTCTAGTCTATCTATCCTACCGATATCACTTCCCGCCTTTTCAG
CCCACTTTCTGTGTGGGTGGGGGCGGGCATGCCGTACCTGTTCGATCATT
GACCTCGCACCCCTACAACGCCAGGACGGAGCGAGAGAGGGGGGGGGGGC
GTACTCATGTAAACGCATGCCGTAGCTGTTAGACCATTGACCTCGTGTCC
CTACGAAGCTAGGGGGGTGAGGAAATGCCACTTGTACTAGAAAGAAAGGC
GGACGGTTAGGCAGGCGAGCCGATGGCTGTGACCAAGGGGCTGTAGATGA
ATATGGATACCGTTCTGCTCCATATCCACTAAACCAAACATATCCTGTTA
CTCTCCCGCCCCCCTCGGTGTGTTAACGTTAACTCTAATCCCCCGACCAA
CGAATAACCGAAAAAACAAAAAATCGAACGACGACGACGGCACCGAGAGA
GCAGCTGGGCAATCAGCTTGAACACCACGGCATCCGCGAGTCGGACCTGA
GGGCGTGGTGCGAGAGCAGCGGGATGCTCGAGGACCTGAGCGTGGACCGC
ATCGGCTTCAGCAAGGGGGAAGGGGAGGACGGCGCCTTCGGGACCGGCCG
CGAGTTCACGCTGCTGGCCGCGACGTGCGTCAGGAAGGCGGAGGGCGCGG
AGCAGAGAGAGGCGAGAAGAAACAGCATTGCTGGTGAGTGGGTGGGTGCG
GCCGTTTTTCCTCCGGGCTGGCAGAAGTTTGCATGGCGCCACCCGAGCGA
GCAGGCTCGGTTCGTTGTTTTTGTGTTGAGTGGCTACAGGTGTAGGGTGG
TGCGATTGAGTCAGCCGAGGTTGTTGGTGAGAGCGTTGGTCGTCGTTTGT
CTTGGTATTTAGTAGGTGGGAATCCCTCTTCTTCTTCCTTCCTCCTCCTT
CTCCTCTGGATGCCTTGGCGGTTTCAGCGGAGGCGGCGTCGGCAGTAGAA
GGAGTTGCACTGCCTGTGCCCTACGTTTCGACCTCTCACTTCACATCGGG
CATTTTCCCGGCGCCTCGGGCTGACAGCCCTGGATATGGTATGGTCAACC
AATCTTCTTTCTTGTCATCAACCCATCTGCACATATCATTCCACTTTCTC
ATGCCTTTCTTCCGTTGGCATTTTTTGTTGTGAATGACCACGGATGACGT
ATCATCCATGGGCCCATCTGTTCTCACTTACCGTCATCTACCTCTCGGCA
GCAGGGGACTTGAGAGACGGGTGCCTGGCGTGCAACCGGCGGGAGGCTGA
GTACGAGTGCGTCCCGTGCGGATGCCATGCCTTCTGCAGGGGCTGCGCGA
TGAAGGTCGCCACCGGCGGGAGGTGAGAGTCGGGGAACGACGTTATGTTT
GGGGAAGGGGGTTGGGGGGGGTACTCATGTTAACGCACGCCGTAGTAGGT
ACCATAGACCTCAGTGTCGGAACGGAGCAAAATGCCTGATTTTCGCCGGC
CGAGGCTATAAGTTTCACAAGGAGGAACCGAAAGCTGGTCATCGGGGAGC
AGGGGGTTGACATATTTTGGGGTTGGTTGGTTGTTGTCGTTCTCGTTTCG
TTGTCCACGTTCAACCCCGCTCCACCTTTACTCAATGCAGCATTTGTCGT
GGTCACAGGCCTTACCACAAGAGTTATAGAATAGAGAAGTAATCCAAGGA
AGCATTCGCTAAGAAAGCATCGGAACGAACGAACGCGATGACCTCTTAAT
GCGAAAAGGTTATTTTAATTTTGTTTGACACTACGATCGCTGTTGTTGGT
TCTGGATCGAACCGCACCAAGCCCCCGATATGTACCGGGATATACTTTGG
GGAAAAGAAAAAGAAGTACAAGTGACTTACGTAGAACGTCACTGTTGGCC
ATGATGAGGCGACGGTGATGAGGGACAATTGATTCGTTTGTCTTCACCCC
GCCACCCTGTGTGATGTGCGAGCCTGGTCCGGTGAGAACCCGGCGTGCTC
CGTCCCGGCTTTGTAGGGACGCGAAGTCAATGGTCTAACGACTACGGCAT
GGACCACTATGAGTACACCTCTCCTTGACGGGTCAGTCTTGAAAGTGGGT
GGGTGGACGGAAGTGAACCCCCCCTCCCCCCCCTTCCACCTCGGGTACCC
CCCCTGCCACTTCGACCACACGCCAGGTGCAAGAGATGCAAGAACATGTT
CGTGGACCTGAAGCGGCTGAGGTGACGGAGGGGCTGGATAAAAAGCCCCT
TTTGCCTGCCTAAAAGCTGAAGCAGATTGACTTGTTTGTCCAAGTAGAAA
AAAACCATGTATTTTGATCGTCTTGCAAGACATACAGAGGGCACAGGAAA
CTTCTGCATGCCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68:11823..17136+

>mRNA_Ecto-sp13_S_contig68.17734.1 ID=mRNA_Ecto-sp13_S_contig68.17734.1|Name=mRNA_Ecto-sp13_S_contig68.17734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1062bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68:11823..17136+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAAAAAAGAAAACCGGCGCCTACCACAGCAGTTTCCAGAGATAAA
ACAGTTCCGGCGGCGCATAACCGACTGTTCCATTTGTCTGTCTCCCCTCC
GCCCCACTCCCTCCGACTCCATGTCGGCTACTGCTTTAACCCGTGATCGC
ACGAACGAACAGAAATCGTCTCATGCCAGCAGGAGCCATGCGCGGTTCGA
GGTGAAGGCGGCCGGCTGGGACGACAAGCCTATCGTCAAAGGAACCACGG
AGACGATCAGGGCCTGGATCGTTAATCAGCCTTGGTGGACGCCACCCCTG
GACGGACCCACACTAGACTTCGGCTGCGGCACGGGGTGCCTGACGATGGC
TCTTAGGGACGACCTTGGCGAGTCTGTGACCGGGGTGGATACGAGCAGGG
CAATGCTGGAGCAGTTCGACCGGAAGGCGGAGGGTCGGGGCGTCACCACC
GCCGCCGTTGAGCTGACGGGGCCGGGGCAGCTGGGGGAGGGCGCGGACGA
CTCCTTCGCCCTGGCCTACAGCAGCCTCACCTTGCACCACATCAGAGATT
GCGAGCGTACCGTTTCGGCGCTGGCGGGATACCTCCGCCCTGGGTCCGGT
CGTCTGGTGCTGTTCGACCTGGAGGCTACAGAGGACGCCCACAAGTTTCA
CCCGGCAGACTTCGAGCTGGGCAATCAGCTTGAACACCACGGCATCCGCG
AGTCGGACCTGAGGGCGTGGTGCGAGAGCAGCGGGATGCTCGAGGACCTG
AGCGTGGACCGCATCGGCTTCAGCAAGGGGGAAGGGGAGGACGGCGCCTT
CGGGACCGGCCGCGAGTTCACGCTGCTGGCCGCGACGTGCGTCAGGAAGG
CGGAGGGCGCGGAGCAGAGAGAGGCGAGAAGAAACAGCATTGCTGGGGAC
TTGAGAGACGGGTGCCTGGCGTGCAACCGGCGGGAGGCTGAGTACGAGTG
CGTCCCGTGCGGATGCCATGCCTTCTGCAGGGGCTGCGCGATGAAGGTCG
CCACCGGCGGGAGGTGCAAGAGATGCAAGAACATGTTCGTGGACCTGAAG
CGGCTGAGGTGA
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