mRNA_Ecto-sp13_S_contig68.17736.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68.17736.1
Unique NamemRNA_Ecto-sp13_S_contig68.17736.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68.17736.1 vs. uniprot
Match: A0A6H5KWL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL3_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 3.810e-60
Identity = 121/124 (97.58%), Postives = 121/124 (97.58%), Query Frame = -1 
Query:    1 RDPGMLRMASSVSTEAPSSKSISVVAPSPDGSGAYLFSRGESRAFGSRRQQSSSLSSYPSFGLSSSGVESSVEAGETGDGGGAGAGMFFGGQHSGRSSAFSDNASSGNVSSLSPPEDQLDEDSV 372
            RDPGMLRMASSVSTEAPSSKSISVVAPSPDGSGAYLFSRGESRAFGSRRQQSSSLSSYPSFGLSSSGVESSVEAGETGDGGGAG  MFFGGQHSGRSSAFSDNASSGNVSSLSPPED LDEDSV
Sbjct: 1755 RDPGMLRMASSVSTEAPSSKSISVVAPSPDGSGAYLFSRGESRAFGSRRQQSSSLSSYPSFGLSSSGVESSVEAGETGDGGGAG--MFFGGQHSGRSSAFSDNASSGNVSSLSPPEDHLDEDSV 1876
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68.17736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWL3_9PHAE3.810e-6097.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68contigEcto-sp13_S_contig68:21402..21843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size442
Hectar predicted targeting categoryother localisation
Exons1
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463934.1347387-CDS-Ecto-sp13_S_contig68:21401..218421681463934.1347387-CDS-Ecto-sp13_S_contig68:21401..21842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 21402..21842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68.17736.1prot_Ecto-sp13_S_contig68.17736.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68 21402..21842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68.17736.1

>prot_Ecto-sp13_S_contig68.17736.1 ID=prot_Ecto-sp13_S_contig68.17736.1|Name=mRNA_Ecto-sp13_S_contig68.17736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
DRIFVQLVFRRAEGGHVAATRVVAERAAPARVLPAEEHAGAGAAAVPCLS
RLDAALDAAAAEAEARVAAEAGRLLPARAERPALSAAEQVRPAPVRGRRH
DGDGLGAGRLGGHGRGHAEHARVAHTQRALRLCPLLALSFRVLLALG
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mRNA from alignment at Ecto-sp13_S_contig68:21402..21843+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68.17736.1 ID=mRNA_Ecto-sp13_S_contig68.17736.1|Name=mRNA_Ecto-sp13_S_contig68.17736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=442bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68:21402..21843+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCGAATCTTCGTCCAGCTGGTCTTCCGGCGGGCTGAGGGAGGACACGT
TGCCGCTACTCGCGTTGTCGCTGAACGCGCTGCTCCTGCCCGAGTGCTGC
CCGCCGAAGAACATGCCGGCGCCGGCGCCGCCGCCGTCCCCTGTCTCTCC
CGCCTCGACGCTGCTCTCGACGCCGCTGCTGCTGAGGCCGAAGCTCGGGT
AGCTGCTGAGGCTGGAAGACTGCTGCCGGCGAGAGCCGAACGCCCTGCTC
TCTCCGCGGCTGAACAGGTACGCCCCGCTCCCGTCCGGGGACGGCGCCAC
GACGGAGATGGACTTGGAGCTGGGCGCCTCGGTGGACACGGACGAGGCCA
TGCGGAGCATGCCCGGGTCGCGCACACGCAGCGAGCTCTTCGCCTCTGCC
CTCTGCTGGCCCTTAGCTTCCGGGTTCTGCTGGCCCTTGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68:21402..21843+

>mRNA_Ecto-sp13_S_contig68.17736.1 ID=mRNA_Ecto-sp13_S_contig68.17736.1|Name=mRNA_Ecto-sp13_S_contig68.17736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68:21402..21843+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCGAATCTTCGTCCAGCTGGTCTTCCGGCGGGCTGAGGGAGGACACGT
TGCCGCTACTCGCGTTGTCGCTGAACGCGCTGCTCCTGCCCGAGTGCTGC
CCGCCGAAGAACATGCCGGCGCCGGCGCCGCCGCCGTCCCCTGTCTCTCC
CGCCTCGACGCTGCTCTCGACGCCGCTGCTGCTGAGGCCGAAGCTCGGGT
AGCTGCTGAGGCTGGAAGACTGCTGCCGGCGAGAGCCGAACGCCCTGCTC
TCTCCGCGGCTGAACAGGTACGCCCCGCTCCCGTCCGGGGACGGCGCCAC
GACGGAGATGGACTTGGAGCTGGGCGCCTCGGTGGACACGGACGAGGCCA
TGCGGAGCATGCCCGGGTCGCGCACACGCAGCGAGCTCTTCGCCTCTGCC
CTCTGCTGGCCCTTAGCTTCCGGGTTCTGCTGGCCCTTGGC
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