prot_Ecto-sp13_S_contig68.17739.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig68.17739.1
Unique Nameprot_Ecto-sp13_S_contig68.17739.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length334
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68.17739.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE)

HSP 1 Score: 414 bits (1063), Expect = 8.670e-138
Identity = 261/312 (83.65%), Postives = 270/312 (86.54%), Query Frame = 0 
Query:   23 MTDQGALESQLAGLQAQREKLVALVGDDPHSPLIPLQEELAVAIDGIIERLSLLREQTGENNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSFPVVVGTLCLAPRVFDRRRARAVVEEVENFKGTCLVTWVHPRKHGEIVCRSWKKGRSCKFSGPDCRFSHGVEVPLSGLLPDDGGGDSSWLASLRSGSQVLACYLDRVWYEATAEGPATPAAAAXXXXXASSMLLAVRFKGFEDDGPLSVPADSSHLAPLEAAVTEPEMDGVGGGXXXXXXXXXXXXXXXXXXSDLEDAWAADAAAAGRRGERDANM 334
            MTDQGALE QLA L+AQRE+LVALVGDD HSPLIPLQEELAVAIDGIIERLSLLREQ GEN  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX EPSFP+VVG LCLAPRVFDRRRARAVVEEVE+ KGTCLVTWVHPRKHGEIVCR WK+GRSCKFSGPDC FSHGVEVPL GLLPDDGGG SSWLASLRSGS+VLA Y DRVWYEATAEGPA PA A      ASSMLLAVRFKGFE DGP+SVPADSSHLAPLEAAVT PE+ GVGGG           XXXXX  SDLEDAWAADA AAGR GERD +M
Sbjct:    1 MTDQGALERQLADLRAQREQLVALVGDDSHSPLIPLQEELAVAIDGIIERLSLLREQAGENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EPSFPIVVGALCLAPRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCRFWKEGRSCKFSGPDCPFSHGVEVPLLGLLPDDGGGGSSWLASLRSGSRVLAFYHDRVWYEATAEGPARPAGAGAGAA-ASSMLLAVRFKGFEADGPVSVPADSSHLAPLEAAVTAPEIHGVGGGNGGASDDAEHEXXXXXE-SDLEDAWAADAVAAGRGGERDGSM 309
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68.17739.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPC0_9PHAE8.670e-13883.65Zinc finger CCCH-type with G patch domain-containi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.1190coord: 124..199
e-value: 6.7E-6
score: 28.1
NoneNo IPR availablePANTHERPTHR46297FAMILY NOT NAMEDcoord: 38..234
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..334
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 166..190
score: 12.249

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68contigEcto-sp13_S_contig68:30086..33806 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68.17739.1mRNA_Ecto-sp13_S_contig68.17739.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig68 29949..33806 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig68.17739.1 ID=prot_Ecto-sp13_S_contig68.17739.1|Name=mRNA_Ecto-sp13_S_contig68.17739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=334bp
MCRRLLLTPVASQPRRAQRERLMTDQGALESQLAGLQAQREKLVALVGDD
PHSPLIPLQEELAVAIDGIIERLSLLREQTGENNEREEEGGQQATTGASN
LPPHPPTQEQEQQQQEPSFPVVVGTLCLAPRVFDRRRARAVVEEVENFKG
TCLVTWVHPRKHGEIVCRSWKKGRSCKFSGPDCRFSHGVEVPLSGLLPDD
GGGDSSWLASLRSGSQVLACYLDRVWYEATAEGPATPAAAAGAGASASSM
LLAVRFKGFEDDGPLSVPADSSHLAPLEAAVTEPEMDGVGGGNGGSSDGG
EPEEEEEEEESDLEDAWAADAAAAGRRGERDANM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH