prot_Ecto-sp13_S_contig67999.17732.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig67999.17732.1
Unique Nameprot_Ecto-sp13_S_contig67999.17732.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length58
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67999.17732.1 vs. uniprot
Match: D7FTF0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF0_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.900e-29
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0 
Query:    1 ISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTYSAAVAACRDGGEWRQALALME 58
            ISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVT+SAAVAACRDGGEWRQALALME
Sbjct:  109 ISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALME 166
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BLAST of mRNA_Ecto-sp13_S_contig67999.17732.1 vs. uniprot
Match: A0A6H5J994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J994_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.490e-29
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0 
Query:    1 ISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTYSAAVAACRDGGEWRQALALME 58
            ISLCGRQG WEDA+FLLRDAQR+SSPGQ RGVDVVTYSAAVAACRDGG+WRQALALME
Sbjct:   11 ISLCGRQGGWEDAIFLLRDAQRLSSPGQLRGVDVVTYSAAVAACRDGGQWRQALALME 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67999.17732.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTF0_ECTSI1.900e-2998.28PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J994_9PHAE2.490e-2991.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..58
e-value: 3.5E-6
score: 28.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67999contigEcto-sp13_S_contig67999:503..676 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67999.17732.1mRNA_Ecto-sp13_S_contig67999.17732.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig67999 503..676 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig67999.17732.1 ID=prot_Ecto-sp13_S_contig67999.17732.1|Name=mRNA_Ecto-sp13_S_contig67999.17732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
ISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTYSAAVAACRDGGEW
RQALALME
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf