mRNA_Ecto-sp13_S_contig67999.17732.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67999.17732.1
Unique NamemRNA_Ecto-sp13_S_contig67999.17732.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67999.17732.1 vs. uniprot
Match: D7FTF0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF0_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.900e-29
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 ISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTYSAAVAACRDGGEWRQALALME 174
            ISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVT+SAAVAACRDGGEWRQALALME
Sbjct:  109 ISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALME 166
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BLAST of mRNA_Ecto-sp13_S_contig67999.17732.1 vs. uniprot
Match: A0A6H5J994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J994_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.490e-29
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 ISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTYSAAVAACRDGGEWRQALALME 174
            ISLCGRQG WEDA+FLLRDAQR+SSPGQ RGVDVVTYSAAVAACRDGG+WRQALALME
Sbjct:   11 ISLCGRQGGWEDAIFLLRDAQRLSSPGQLRGVDVVTYSAAVAACRDGGQWRQALALME 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67999.17732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTF0_ECTSI1.900e-2998.28PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J994_9PHAE2.490e-2991.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67999contigEcto-sp13_S_contig67999:503..676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score118.2
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog2880.D7FTF0
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size174
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463934.0163913-CDS-Ecto-sp13_S_contig67999:502..6761681463934.0163913-CDS-Ecto-sp13_S_contig67999:502..676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67999 503..676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67999.17732.1prot_Ecto-sp13_S_contig67999.17732.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67999 503..676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67999.17732.1

>prot_Ecto-sp13_S_contig67999.17732.1 ID=prot_Ecto-sp13_S_contig67999.17732.1|Name=mRNA_Ecto-sp13_S_contig67999.17732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
ISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTYSAAVAACRDGGEW
RQALALME
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mRNA from alignment at Ecto-sp13_S_contig67999:503..676+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67999.17732.1 ID=mRNA_Ecto-sp13_S_contig67999.17732.1|Name=mRNA_Ecto-sp13_S_contig67999.17732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67999:503..676+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAGCCTCTGTGGGAGACAGGGGGCGTGGGAGGACGCCGTGTTTCTGTT
GCGGGACGCCCAGAGGGTTTCGTCCCCGGGGCAGCGGCGGGGGGTGGATG
TGGTGACGTATAGCGCGGCGGTGGCGGCTTGCCGGGACGGAGGGGAGTGG
CGGCAGGCGCTAGCGCTGATGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67999:503..676+

>mRNA_Ecto-sp13_S_contig67999.17732.1 ID=mRNA_Ecto-sp13_S_contig67999.17732.1|Name=mRNA_Ecto-sp13_S_contig67999.17732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67999:503..676+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAGCCTCTGTGGGAGACAGGGGGCGTGGGAGGACGCCGTGTTTCTGTT
GCGGGACGCCCAGAGGGTTTCGTCCCCGGGGCAGCGGCGGGGGGTGGATG
TGGTGACGTATAGCGCGGCGGTGGCGGCTTGCCGGGACGGAGGGGAGTGG
CGGCAGGCGCTAGCGCTGATGGAG
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