mRNA_Ecto-sp13_S_contig6798.17730.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6798.17730.1
Unique NamemRNA_Ecto-sp13_S_contig6798.17730.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6798.17730.1 vs. uniprot
Match: A0A6H5KE00_9PHAE (YTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE00_9PHAE)

HSP 1 Score: 624 bits (1608), Expect = 2.180e-205
Identity = 574/666 (86.19%), Postives = 581/666 (87.24%), Query Frame = 1 
Query:   43 VVGPGMFGMMGPHGGIGNGAXXXXXXXXXXFMADPTAMGMMHQHMPPHMAVGGFQNGYGGXXXXXXXSAHRGGYGRRXXXXXXXXRGGYKXXXXXXXXXXXXXXXXXXMQAFGGNGGGMFNPYVAAQQQAMMQQAFMMPMPVQLPAHVSLINAPSFDPEAAAVEGTRFFVMKTFSEDDIHRSVKLSVWSGGEATNRRLDAAFKGIKSKDSGKGGDKSSKDSGDAASKDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGATTAAKDASDGDLEKPASEGVSVAGDGAPADAGKEQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGXXXXXXXXXXXPETTAVPAEXXXXXXXXXXXGKGGAASEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADASPSASAEKPAATSGDVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAPPVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPNNKPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYENRALQHQHRPKHQHQQYGNNHPANQFGNPYATHFTPQQ 2040
            VVGPGMFGMMGPH       XXXXXXXXXXFMADP AMGMMHQHMPPHMAVGGFQNG+GGXXXXXXXSA RGGYGRRXXXXXXXXRGGYKXXXXXXX  XXXXXXXXX QAF   GGGMFNPYVAAQQQAMM QAFMMPMPVQLPAHVSLINAPSFDPEAAAVEGTRFFVMKTFSEDDIHRSVKLSVWSGGEATNRRLDAAFKGIK KDSGKGGDKSSKDSGDAA KDT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        KDASDGD+EKPASEGVSVAGDGAP D GK+QA    XXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXX  PETTAVPA            GKGGAASEXXXX XXXXXXXXXXXXXXXXXXXXXXXX ADAS SA  EKPAATS DV+E   XXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 KAPPVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPNNKPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYENRA+QHQHRPKHQHQQ+GNNHPANQ+GNPYATHFTPQQ
Sbjct:  466 VVGPGMFGMMGPHXXXXXXXXXXXXXXXXXFMADPAAMGMMHQHMPPHMAVGGFQNGFGGXXXXXXXSAQRGGYGRRXXXXXXXXRGGYKXXXXXXXFVXXXXXXXXXXQAFXXXGGGMFNPYVAAQQQAMMHQAFMMPMPVQLPAHVSLINAPSFDPEAAAVEGTRFFVMKTFSEDDIHRSVKLSVWSGGEATNRRLDAAFKGIKPKDSGKGGDKSSKDSGDAAGKDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXKDASDGDVEKPASEGVSVAGDGAPEDVGKKQATSAAXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXAAPETTAVPAVDESSSSADAGAGKGGAASEXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXADASASARVEKPAATSVDVKEDSAXXXXXXXXXXXXXXXXXXXXXXXXKPEGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVATSGKGGKGAGRSNKKAPPVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPNNKPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYENRAMQHQHRPKHQHQQHGNNHPANQYGNPYATHFTPQQ 1124
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BLAST of mRNA_Ecto-sp13_S_contig6798.17730.1 vs. uniprot
Match: D7G0F3_ECTSI (Putative RNA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F3_ECTSI)

HSP 1 Score: 501 bits (1290), Expect = 1.030e-167
Identity = 485/630 (76.98%), Postives = 491/630 (77.94%), Query Frame = 1 
Query:  136 MADPTAMGMMHQHMPPHMAVGGFQNGYGGXXXXXXXSAHRGGYGRRXXXXXXXXRGGYKXXXXXXXXXXXXXXXXXXMQAFGGNGGGMFNPYVAAQQQAMMQQAFMMPMPVQLPAHVSLINAPSFDPEAAAVEGTRFFVMKTFSEDDIHRSVKLSVWSGGEATNRRLDAAFKGIKSKDSGKGGDKSSKDSGDAASKDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGATTAAKDASDGDLEKPASEGVSVAGD--GAPADAGKEQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGXXXXXXXXXXXPETTAVPAEXXXXXXXXXXXGKGGAASEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADASPSASAEKPAATSGDVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---KAPPVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPNNKPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYENRALQHQHRPKHQHQQYGN-NHPANQFG 2007
            MADP AMGMMHQHMPPHMAVGGFQNG+G XXXXXXXSA RGGYGRRXXXXXXXXRGGYKXXXXXXXXXXXXXXXXXXMQAFG  GGGMFNPYVAAQQQAMMQQAFMMPMPVQLPAHVSLINAPSFDPEAAAVEGTRFFVMKTFSEDDIHRSVKLSVWSGGEATNRRLDAAFKGIK KDSGKGGDKSSKDSGDAA KDT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         SEGAT AA                   GD   + ADAG                                                                    GK      XXXXXXXXXXXXXXXXXXXXXXXXXXXX AADAS SAS EKPAATSGDV+E      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            KAPPVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRS FPVKWVFAKDLPNQQLKHITLPNNKPVAAAKDSQEVPFEQGLQMLKAFHEH HVTSIVDDYAFYENRALQHQHRPKHQHQQ+G+ NHPANQ+G
Sbjct:    1 MADPAAMGMMHQHMPPHMAVGGFQNGFGXXXXXXXXSAQRGGYGRRXXXXXXXXRGGYKXXXXXXXXXXXXXXXXXXMQAFGXXGGGMFNPYVAAQQQAMMQQAFMMPMPVQLPAHVSLINAPSFDPEAAAVEGTRFFVMKTFSEDDIHRSVKLSVWSGGEATNRRLDAAFKGIKPKDSGKGGDKSSKDSGDAAGKDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEG-------SEGATXAA-----------------AVGDKSSSSADAGA-------------------------------------------------------------------GKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAADASASASVEKPAATSGDVKEDSAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGGKGAGRGNKKAPPVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSRFPVKWVFAKDLPNQQLKHITLPNNKPVAAAKDSQEVPFEQGLQMLKAFHEHTHVTSIVDDYAFYENRALQHQHRPKHQHQQHGSSNHPANQYG 539
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BLAST of mRNA_Ecto-sp13_S_contig6798.17730.1 vs. uniprot
Match: UPI00187CEE7C (YTH domain-containing protein ECT3-like n=1 Tax=Artibeus jamaicensis TaxID=9417 RepID=UPI00187CEE7C)

HSP 1 Score: 123 bits (308), Expect = 5.060e-29
Identity = 64/111 (57.66%), Postives = 75/111 (67.57%), Query Frame = 1 
Query: 1606 PVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPNN--KPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYENR 1932
            PVFLFFSV  S QF G A++ GP+D   K V     D+W   F +KW   KD+PN  LKHITL NN  KPV  ++D+QEV  EQGLQMLK F EH   TSI+DD+AFYENR
Sbjct:   23 PVFLFFSVNTSGQFVGVAEMVGPVDFD-KTVDYWQQDKWNGCFSIKWHIVKDIPNNILKHITLDNNDNKPVTNSRDTQEVKLEQGLQMLKIFKEHVSKTSILDDFAFYENR 132
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BLAST of mRNA_Ecto-sp13_S_contig6798.17730.1 vs. uniprot
Match: Q84LJ8_AVESA (Putative RNA-binding protein (Fragment) n=1 Tax=Avena sativa TaxID=4498 RepID=Q84LJ8_AVESA)

HSP 1 Score: 122 bits (307), Expect = 2.160e-28
Identity = 64/111 (57.66%), Postives = 75/111 (67.57%), Query Frame = 1 
Query: 1606 PVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPNN--KPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYENR 1932
            PVFLFFSV  S QF G A++ GP+D   K V     D+W   F +KW   KD+PN  LKHITL NN  KPV  ++D+QEV  EQGLQMLK F EH   TSI+DD+AFYENR
Sbjct:   27 PVFLFFSVNTSGQFVGIAEMIGPVDFD-KTVDYWQQDKWNGCFSIKWHIVKDIPNNILKHITLENNDNKPVTNSRDTQEVKLEQGLQMLKIFKEHVSKTSILDDFAFYENR 136
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BLAST of mRNA_Ecto-sp13_S_contig6798.17730.1 vs. uniprot
Match: R7U9W0_CAPTE (YTH domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U9W0_CAPTE)

HSP 1 Score: 118 bits (296), Expect = 4.740e-27
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1 
Query: 1606 PVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPNN--KPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYENR 1932
            PVFLFFSV  S  FCG AQ+   +D+        A D+W+  F VKW++ KD+PN QL+HI L NN  KPV  ++D+QEVP E+G Q+L+  H+++H TSI DD++ YE R
Sbjct:   50 PVFLFFSVNGSGHFCGMAQMMSAVDYNASSSVW-AQDKWKGQFEVKWIYVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKGKQVLRILHQYRHTTSIFDDFSHYEKR 159
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BLAST of mRNA_Ecto-sp13_S_contig6798.17730.1 vs. uniprot
Match: A0A7J7KVC4_9MAGN (YTH domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7KVC4_9MAGN)

HSP 1 Score: 127 bits (318), Expect = 1.120e-26
Identity = 65/111 (58.56%), Postives = 77/111 (69.37%), Query Frame = 1 
Query: 1606 PVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPNN--KPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYENR 1932
            PVFLFFSV  S QF G A++ GP+D   K V+    D+W  HFPVKW   KD+PN  LKHITL NN  KPV  ++D+QEV FEQGLQMLK F E    T I+DD+AFYE+R
Sbjct:  489 PVFLFFSVNASGQFVGLAEMVGPVDFN-KTVEYWQQDKWNGHFPVKWHIVKDVPNNLLKHITLENNDNKPVTNSRDTQEVKFEQGLQMLKIFKEFSSKTCILDDFAFYEDR 598
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BLAST of mRNA_Ecto-sp13_S_contig6798.17730.1 vs. uniprot
Match: T1EKP6_HELRO (YTH domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EKP6_HELRO)

HSP 1 Score: 115 bits (287), Expect = 3.950e-26
Identity = 52/108 (48.15%), Postives = 74/108 (68.52%), Query Frame = 1 
Query: 1609 VFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPNN--KPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYE 1926
            VFL+FSV  S  FCG AQ+  P+D+        A ++W+  F VKW++ KD+PN QL+HI L NN  KPV  ++D+QEVP+E+G Q+L+  H+++H TSI DD+  YE
Sbjct:   45 VFLYFSVNGSGHFCGVAQMTSPIDYSSSSEVW-AQNKWKGQFTVKWIYVKDVPNSQLRHIKLENNENKPVTNSRDTQEVPYEKGKQVLRIIHQYRHTTSIFDDFYHYE 151
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BLAST of mRNA_Ecto-sp13_S_contig6798.17730.1 vs. uniprot
Match: A0A8J5H147_ZINOF (YTH domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5H147_ZINOF)

HSP 1 Score: 124 bits (310), Expect = 8.270e-26
Identity = 64/124 (51.61%), Postives = 80/124 (64.52%), Query Frame = 1 
Query: 1606 PVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPNN--KPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYENRALQHQHRPKHQHQ 1971
            PVFLFFSV  SAQFCG A++ GP+D + K V     D+W   FPVKW   KD+PN   +HI L NN  KPV  ++D+QEV  EQGL+ML  F +H++  SI+DD+ FYE R    Q R   QHQ
Sbjct:  442 PVFLFFSVNASAQFCGVAEMIGPVDFE-KSVDYWQQDKWNGQFPVKWHIVKDVPNNLFRHIILENNDNKPVTNSRDTQEVKLEQGLEMLNIFRKHEYEVSILDDFEFYEEREKAMQERKAIQHQ 564
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BLAST of mRNA_Ecto-sp13_S_contig6798.17730.1 vs. uniprot
Match: A0A453LSB6_AEGTS (YTH domain-containing protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453LSB6_AEGTS)

HSP 1 Score: 123 bits (308), Expect = 8.320e-26
Identity = 64/111 (57.66%), Postives = 75/111 (67.57%), Query Frame = 1 
Query: 1606 PVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPNN--KPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYENR 1932
            PVFLFFSV  S QF G A++ GP+D   K V     D+W   F +KW   KD+PN  LKHITL NN  KPV  ++D+QEV  EQGLQMLK F EH   TSI+DD+AFYENR
Sbjct:  372 PVFLFFSVNTSGQFVGVAEMVGPVDFD-KTVDYWQQDKWNGCFSIKWHIVKDIPNNILKHITLDNNDNKPVTNSRDTQEVKLEQGLQMLKIFKEHVSKTSILDDFAFYENR 481
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BLAST of mRNA_Ecto-sp13_S_contig6798.17730.1 vs. uniprot
Match: A0A5A7Q911_STRAF (Evolutionarily conserved C-terminal region 5 n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7Q911_STRAF)

HSP 1 Score: 123 bits (309), Expect = 9.200e-26
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = 1 
Query: 1606 PVFLFFSVYQSAQFCGAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPNN--KPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYENR 1932
            PVFLFFSV  S QFCG A++ GP+D +      +  DRW   FPVKW   KD+PN + +HI L NN  KPV  ++DSQEV  EQG++MLK F EH   TS++DD+ FY+ R
Sbjct:  445 PVFLFFSVNASGQFCGVAEMIGPVDFENDADYWQQQDRWSGQFPVKWHIIKDVPNSRFRHIVLENNDNKPVTHSRDSQEVKLEQGIEMLKIFKEHDPETSLLDDFEFYDER 555
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6798.17730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE00_9PHAE2.180e-20586.19YTH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0F3_ECTSI1.030e-16776.98Putative RNA-binding protein n=1 Tax=Ectocarpus si... [more]
UPI00187CEE7C5.060e-2957.66YTH domain-containing protein ECT3-like n=1 Tax=Ar... [more]
Q84LJ8_AVESA2.160e-2857.66Putative RNA-binding protein (Fragment) n=1 Tax=Av... [more]
R7U9W0_CAPTE4.740e-2749.55YTH domain-containing protein n=1 Tax=Capitella te... [more]
A0A7J7KVC4_9MAGN1.120e-2658.56YTH domain-containing protein n=1 Tax=Kingdonia un... [more]
T1EKP6_HELRO3.950e-2648.15YTH domain-containing protein n=1 Tax=Helobdella r... [more]
A0A8J5H147_ZINOF8.270e-2651.61YTH domain-containing protein n=2 Tax=Zingiber off... [more]
A0A453LSB6_AEGTS8.320e-2657.66YTH domain-containing protein n=4 Tax=Triticinae T... [more]
A0A5A7Q911_STRAF9.200e-2652.25Evolutionarily conserved C-terminal region 5 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6798contigEcto-sp13_S_contig6798:1464..7359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score510.0
Seed ortholog evalue1.8e-141
Seed eggNOG ortholog2880.D7G0F3
Model size2103
KEGG koko:K20102
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000288,GO:0000289,GO:0000785,GO:0000790,GO:0000792,GO:0000956,GO:0001672,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0010847,GO:0016070,GO:0016071,GO:0016604,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031445,GO:0031554,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0032991,GO:0033043,GO:0033044,GO:0033620,GO:0033621,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043243,GO:0043244,GO:0043487,GO:0043488,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051252,GO:0051254,GO:0051445,GO:0051447,GO:0051726,GO:0060255,GO:0060566,GO:0060968,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071030,GO:0071031,GO:0071704,GO:0080090,GO:0090052,GO:0090053,GO:0090304,GO:0097157,GO:0097159,GO:0110064,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902275,GO:1902680,GO:1902801,GO:1903311,GO:1903506,GO:1903508,GO:1904594,GO:1904595,GO:1905269,GO:1905762,GO:1990251,GO:1990342,GO:1990904,GO:2000112,GO:2000241,GO:2000242,GO:2001141,GO:2001252
Exons8
EggNOG free text desc.N6-methyladenosine-containing RNA binding
EggNOG OGsKOG1901@1,KOG1901@2759
Cds size2103
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6798.17730.1prot_Ecto-sp13_S_contig6798.17730.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6798 1464..7359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463933.793308-CDS-Ecto-sp13_S_contig6798:1463..18351681463933.793308-CDS-Ecto-sp13_S_contig6798:1463..1835Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6798 1464..1835 +
1681463933.8098826-CDS-Ecto-sp13_S_contig6798:2653..27251681463933.8098826-CDS-Ecto-sp13_S_contig6798:2653..2725Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6798 2654..2725 +
1681463933.8291268-CDS-Ecto-sp13_S_contig6798:3435..35331681463933.8291268-CDS-Ecto-sp13_S_contig6798:3435..3533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6798 3436..3533 +
1681463933.846207-CDS-Ecto-sp13_S_contig6798:3948..40791681463933.846207-CDS-Ecto-sp13_S_contig6798:3948..4079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6798 3949..4079 +
1681463933.8570848-CDS-Ecto-sp13_S_contig6798:4350..53781681463933.8570848-CDS-Ecto-sp13_S_contig6798:4350..5378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6798 4351..5378 +
1681463933.8681333-CDS-Ecto-sp13_S_contig6798:5839..59711681463933.8681333-CDS-Ecto-sp13_S_contig6798:5839..5971Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6798 5840..5971 +
1681463933.8788726-CDS-Ecto-sp13_S_contig6798:6618..67901681463933.8788726-CDS-Ecto-sp13_S_contig6798:6618..6790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6798 6619..6790 +
1681463933.896937-CDS-Ecto-sp13_S_contig6798:7261..73591681463933.896937-CDS-Ecto-sp13_S_contig6798:7261..7359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6798 7262..7359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6798.17730.1

>prot_Ecto-sp13_S_contig6798.17730.1 ID=prot_Ecto-sp13_S_contig6798.17730.1|Name=mRNA_Ecto-sp13_S_contig6798.17730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=701bp
GSGVGTLGGVGGGGVVGPGMFGMMGPHGGIGNGAPHLGYVNGAPFMADPT
AMGMMHQHMPPHMAVGGFQNGYGGGGGGGGGSAHRGGYGRRGRGGGGGGR
GGYKGRGGNGRFAGNNAGRGGGMQAFGGNGGGMFNPYVAAQQQAMMQQAF
MMPMPVQLPAHVSLINAPSFDPEAAAVEGTRFFVMKTFSEDDIHRSVKLS
VWSGGEATNRRLDAAFKGIKSKDSGKGGDKSSKDSGDAASKDTTASSSKK
KGKKKGGGGKTAGEDKKADGGGGGGGGGGGSDKKAAAAAESEGATTAAKD
ASDGDLEKPASEGVSVAGDGAPADAGKEQAATATASATASEGDDKDKEEE
EEEEEEEGPAAGGETATAAGGDAAPETTAVPAEDESSSSADAGAGKGGAA
SESAAAGAGSESPVAEEGASDAGAKDDVADEAADASPSASAEKPAATSGD
VEEDSAAAAGGDEKKEDRVAAAAEGGESGGKPDGKWEASSTTTGKSSASK
EKDSSSGGGKKATGGTVATSGKGGKGGGRGSKKAPPVFLFFSVYQSAQFC
GAAQLCGPLDHQGKKVKGRAHDRWRSHFPVKWVFAKDLPNQQLKHITLPN
NKPVAAAKDSQEVPFEQGLQMLKAFHEHKHVTSIVDDYAFYENRALQHQH
RPKHQHQQYGNNHPANQFGNPYATHFTPQQQQQQHIVAQQQYQQYQNQQQ
F
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mRNA from alignment at Ecto-sp13_S_contig6798:1464..7359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6798.17730.1 ID=mRNA_Ecto-sp13_S_contig6798.17730.1|Name=mRNA_Ecto-sp13_S_contig6798.17730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5896bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6798:1464..7359+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAGCGGCGTTGGCACCCTCGGCGGCGTCGGCGGGGGGGGGGTCGTCGG
ACCGGGAATGTTCGGGATGATGGGTCCCCACGGGGGCATCGGGAACGGGG
CCCCGCACCTGGGATACGTGAACGGCGCGCCTTTCATGGCGGACCCTACC
GCCATGGGAATGATGCATCAGCATATGCCGCCGCACATGGCCGTCGGGGG
TTTCCAAAATGGCTACGGTGGCGGCGGTGGCGGCGGGGGGGGGTCCGCGC
ATCGCGGGGGGTACGGCAGGAGAGGCAGGGGTGGCGGTGGAGGGGGGCGT
GGGGGTTACAAGGGGCGAGGGGGCAACGGGAGGTTCGCGGGGAACAATGC
CGGGCGTGGTGGTGGGATGCAGGTGGGCAACGAGCGCGGTCTTTTGTTGT
GCTATGGGCTCGTTGCCGAGCGTGCGAGACCTCATCATCGCACAACGAGT
CGAGCATCTATGTTAGGTCGATGCATTTATGGGAAACACGTCGCGTTCGT
CAAGATAACAGCAGCAATTAGCATCAGCAAGTGAGGTCCGCTGTGTGGCG
GGACGCAATGCTGGGGACGGACTCCGAAGTAGGGAAGCAAACGGGCCGAG
TTGGTATGTGTGGTCAATGTTGGTGAGGGGGAGGGTGAGTCCGATCTCGC
TTGAAAGCCATCAGTAATAGCGGGGCCAATGTTGCCGGTGATGTGAGCAC
CCTTGGTACCGATGTTGAACGGTGGATTGCTCCACTCCCATGTGGGTGCC
ATCGCCGGAAAAAAAGTGCTGTGAAACTTCAAGTTCTCTGTGAGATCTTG
CCGACGCCTCCCTCAAGGCACAAGATCAATGCCTGTTTACGGTAGGGGTG
TTTCCCATTCTAGCTGTTTTTCTGGCATCGTTCAACCATATGCAGTCATG
CCCGCTTTGAAGACGCTCGGGTTAGGTCAACGATAAGAATTTTCTCAGAA
CCATGGTGCCTGTGTGTTCATAATGCAGGAGGGATGCAAACCTTCAAGGC
ACTTCCGCGCGTAGTGGACACGCTGTTCAGAAGATGAAGATGTGCGTGTT
TTACAGCGGGGGTGATTGCATCCCCAACGCTAGACCCCGCCCTTACGCAA
CGTTCAGCTTTGTCTCAGCCTTCCGATGCCGTTGTACCTGTGCCTCTCAA
CTTACAATATTGGCCTTTCCCCCCTCGCCTCATCGGACAGGCGTTCGGCG
GCAACGGGGGTGGCATGTTCAACCCTTACGTGGCGGCACAGCAGCAGGCA
ATGATGCAGCAGGTACGACGCTCAGAGGGCAGACGATAGGGTATGGCGGT
GGCCGACGTGCTCGCGTGGGTGTTGGTTCTCCTCTGCGTACTTGACTTGT
GCAACAACGTCCCTTCCGTAGTAGCAAGGGAGTGTTCGGGGGCATCGTGG
TGGTGGTGGTGGTGAGGTTGGGGTCCTGCTTACCGGGGCTTAGGGGGAAT
GGAAAAAACAAAGCGAAAGAAGGAACATCGGGTCGCCTGGTTTACAGTTT
AGAACCATTTGATATTGGTGCCGTTGGCAAAACCCAGTCGATTTCTTCTT
GCGCCCGCGCCCCCTCCTGACCACCCCAACCCAGGCCTAAACCTCGACGG
TTCCCCTGTTTCCGAGGGTGTAGTGGTCGTGCGTGTAGGTGATTCGGAAA
ACATGGAGTGCACGACCACCGTTGGAAATAATTATCACAAGGAACGTAAG
GGAAATTCTGTAGGCCAGCGGTGGTTTCAGATTGCTGTCTGCTGGGCTTT
GTTGCGCCTGTTTTTTGTCATCGCATGAAGAATCCACTAATGCGAGCCGG
AACCAGAACACCCAGCAAGATGTGTTTTAACTCTCTACGTCACCTCACCT
GCAAGTCGTTGCTGACGGTGTTTTGTTTGATCTTCCGTCCTCGACCTCCC
TTGTGCGTGTCCGCCGCCGCTCCCCAACAAACTTCGAAAATTTCCGTTGT
TCGACTTGCAAATCCCCTGAAGGCGTTCATGATGCCGATGCCCGTACAGC
TCCCGGCGCACGTCTCGCTCATCAATGCTCCGTCCTTTGATCCCGAAGCA
GCGGCGGTCGAGGGTACCCGGTGAGTGTACACGGCGTCCCTACTTAAAAG
CCTCACCAAGGCTCGTTTTTCTTGATTCCCCTGTAGAATGACCTCAGTAG
TTTTTTTCAGTGTAGGGTCCTAGTGGAAGCGCCGGTTTCGATTGTCGATT
CCTCTCGAATTTTTTTTTTTTGGGCCTGAAGTTCTGGACGCCAGGGGTGT
CACTGAAGCGGTCGTGCGTTCTGTAGAGAGCTGCCGGTGTCGTCATCGTC
ATGGTTGTTGCTCCTCACGACTACGACCATCGCACCGTAGTACGAGACAT
GCAGTGCTGTTACAATTTCCTGAAACACGCGGCTGTGGCAACACTGGTGT
AATTCCGTTTGTGTCCTCCCAAAACCAACTGAAGAAGCCCCCCCCCTCCC
CTCATTTCCTGTTCATGTTTTTTTTTTTTTGCCAGGTTTTTCGTGATGAA
AACCTTCTCGGAAGATGACATTCACCGCTCCGTTAAGCTCTCGGTGTGGT
CTGGCGGGGAAGCGACCAACAGGCGGCTCGACGCCGCGTTCAAGGGTATC
AAGTCCAAGGACAGCGGTGCGAAATTTTGCTTTGTACTGTTTTGATTTTC
CGTTCCGGGCCGCTGACTGGTTGATTGATTTGTCATGTTTTTTTTTCTTT
TTATCTCAGGGAATTTCTCTTGTTGACATTTACGGCATGGTGTTTCCAGG
AGTTGGTCCTCCGACAAAATGTCCTTTTCTTTTTTTTTTTGATTTTCGTT
GTCTGCGACAACACCGTGATTCTCTCCGATCTGACGTGGCACGCCGGCGT
GTCCTCCCTGTTGCTACTGGTATCCCGCCCTCTTCAGGCAAGGGAGGAGA
CAAGTCCTCCAAGGATTCCGGTGATGCCGCGAGCAAGGACACCACCGCCT
CGTCGTCCAAGAAAAAGGGCAAAAAGAAGGGGGGCGGGGGCAAGACGGCC
GGAGAGGACAAGAAGGCCGATGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
TGGCAGTGACAAGAAGGCGGCTGCAGCGGCGGAGAGCGAGGGCGCCACCA
CTGCCGCCAAGGACGCTAGCGATGGCGACCTCGAGAAACCCGCGTCGGAG
GGGGTAAGCGTAGCCGGCGACGGGGCCCCCGCAGATGCCGGGAAGGAACA
AGCCGCTACCGCCACCGCCTCCGCCACCGCCTCCGAAGGCGACGACAAGG
ACAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCCCCGCCGCTGGT
GGCGAGACCGCTACCGCTGCGGGCGGTGACGCTGCCCCGGAGACCACCGC
CGTTCCTGCCGAAGACGAATCCTCTTCGAGTGCCGACGCCGGGGCCGGCA
AGGGCGGGGCGGCGTCGGAGTCGGCTGCGGCGGGGGCCGGCAGTGAGTCT
CCCGTGGCGGAGGAGGGTGCCTCGGACGCCGGCGCTAAGGACGACGTGGC
CGACGAGGCCGCCGACGCTAGTCCTAGTGCTAGTGCGGAGAAGCCCGCTG
CTACGTCGGGTGATGTTGAGGAGGACAGCGCCGCTGCCGCCGGCGGGGAC
GAGAAGAAGGAAGATCGTGTAGCGGCAGCCGCGGAAGGTGGAGAGAGCGG
CGGCAAGCCCGACGGGAAGTGGGAGGCCTCCTCGACAACAACCGGGAAGT
CTTCTGCTTCCAAGGAGAAGGATAGCAGTAGCGGCGGCGGTAAGAAGGCG
ACCGGGGGCACCGTCGCGACAAGCGGCAAGGGCGGTAAGGGGGGCGGGCG
CGGCAGCAAGAAGGCCCCGCCGGTGTTCTTGTTCTTTTCGGTGTACCAGT
CAGCCCAGTTCTGCGGAGCCGCGCAGCTGTGCGGTCCTCTGGACCACCAG
GGCAAGAAGGTCAAGGTGAGAGCCCTAACGCCTTGTATTTATTTTTTTAT
TTATTTGCTGGTGGACATGTGTCATGTCGCACCTTCTGTCACAGTTTCTG
GATGTAGTGGCCGTGGTGGGTATAGAGTACCGCATCGGTTCCGTCATGCG
TGTGCTCACCCTGACATTGCCTAGGCATATTCTCCTCCTGTGCACGGTGT
AGAGCGATATCTCTTGCTGGCATGATGCCCACCAATGTTACAATATAGGC
CCCTCATCCTGTAGTGACTTGCCCCGTTCTTTCGTGGTATAGGTGATGAA
CACTATTCCTACTACTGTAACTGAGTGTCGCTGACGGGTGCGTCTGTAGT
TTGGTGTTTACACAGAGCTGACCCTCCTTTTTTGTCCTACCGTGGTGACC
GACTCGGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCTTCTGCCTTGCCC
TGGGCCGTGGTTCCAATGGCCTTCAGGGCCGCGCACACGACCGCTGGCGG
TCACACTTCCCCGTCAAGTGGGTATTCGCCAAGGACCTCCCCAACCAGCA
GCTGAAGCACATCACGCTCCCGAACAACAAGCCAGTCGCAGCGGCGAAGG
ATTCCCAGGTATGTGGTTTTTGGACAATATACATGCATTCAAAGAAAGAG
TGCCCGTGTTTTAAAAATATACATGCATTCAAAGAAAGAGTACCCGTGTT
TTGGAAAATATACGTGCATGCAAAGAATTAGTACCCGTGAGAGATGATAC
CGTGGGTGTTGTTGGTGTTGACTGGAGGCGATTTGTGGGCTGATCGTGAC
CTGGCGTGTTGGCAGCGTTGCATGACTACGGAATGTCAATGGGCTGAGTG
TCCCCCTGCATGCTTGCAACCGTTAGTTGCTAGAGAGTTTCGTGTCACTG
CATGTTGTCAACGATTCCCAGCTACGGAGTATTTAATGGGCTGATTACGG
CCCTCCATGTTTGCAACGATTTTTTCTTGCGGAGTATGTGTGGGCTGATC
ACGTCCCTCCATGTTTGCACCGCTTCGCAACTAGCGAGTTTATTGCGTCA
CGAGCGCCAAAGAGGGGGCGTATTTGGGCTTTGACTCCGTATAGTGATTG
CCACCGTGTTTATGGTTTTGCCTTCACAGGAGGTGCCGCCTGAGCAGGGT
TTGCAGATGATGCCTAAGGGAGCGCCCTAGGACGTTGTGCTTGGGCTAAT
TGGTCTCGTGCCCTCTATGTAATGTGCCCTGTTGTCATGTGATTGTGTTT
TACAGGAGGTGCCGTTTGAGCAGGGTTTGCAGATGCTGAAGGCGTTCCAC
GAACACAAGCACGTAACGTCGATCGTAGACGACTACGCCTTCTACGAGAA
CAGGGCTCTGCAGCACCAGCACCGGCCGAAGCACCAGCACCAGCAGTACG
GCAACAACCACCCTGCCAACCAGTTCGGTAAGATAGATGCTGTAGACCGA
TCTCGAGAGACGACGGCTTGTACATACAAGGCGCCAGCTTTTGAGGAGCC
CTTTGTTGGCCACGAGGCTAGTTTTTTTTCTTTCTCCGGCGTACCACAGC
ATCGACTGACTCTAAATGTGTTTTTGTAGGGTTCGCTCCTGAACACCTGT
TGTTGTGCTCAATTTCTTACACATTTCATTTCCTTTCTATTTCCGCGTGA
GTTTGTTGTCTCATGGTTCTTGAGCGACTTAGCGCGTACTTCTCTGTTGT
TGTTCTTGTTTTCTTCTCCTGCAGCAGCCGTCTAGTGTGTTTACGATCTC
GCTAAAAAAAGCATGATGATCAGGTACTGGCTTGCCAGCCCCTTTTGCCT
CTGTAAACATAGTTTTTAATTCAATACGTTTCCGCGCGGCTCTACAAGTT
TTAACGCCCCTACTCCGCTACTGCTTTTATTCCCCTCGCCTTTTCCAGGA
AACCCCTACGCAACTCACTTCACCCCGCAGCAACAGCAGCAGCAGCACAT
AGTGGCCCAGCAGCAGTATCAGCAGTACCAAAACCAGCAACAATTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6798:1464..7359+

>mRNA_Ecto-sp13_S_contig6798.17730.1 ID=mRNA_Ecto-sp13_S_contig6798.17730.1|Name=mRNA_Ecto-sp13_S_contig6798.17730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2103bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6798:1464..7359+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAGCGGCGTTGGCACCCTCGGCGGCGTCGGCGGGGGGGGGGTCGTCGG
ACCGGGAATGTTCGGGATGATGGGTCCCCACGGGGGCATCGGGAACGGGG
CCCCGCACCTGGGATACGTGAACGGCGCGCCTTTCATGGCGGACCCTACC
GCCATGGGAATGATGCATCAGCATATGCCGCCGCACATGGCCGTCGGGGG
TTTCCAAAATGGCTACGGTGGCGGCGGTGGCGGCGGGGGGGGGTCCGCGC
ATCGCGGGGGGTACGGCAGGAGAGGCAGGGGTGGCGGTGGAGGGGGGCGT
GGGGGTTACAAGGGGCGAGGGGGCAACGGGAGGTTCGCGGGGAACAATGC
CGGGCGTGGTGGTGGGATGCAGGCGTTCGGCGGCAACGGGGGTGGCATGT
TCAACCCTTACGTGGCGGCACAGCAGCAGGCAATGATGCAGCAGGCGTTC
ATGATGCCGATGCCCGTACAGCTCCCGGCGCACGTCTCGCTCATCAATGC
TCCGTCCTTTGATCCCGAAGCAGCGGCGGTCGAGGGTACCCGGTTTTTCG
TGATGAAAACCTTCTCGGAAGATGACATTCACCGCTCCGTTAAGCTCTCG
GTGTGGTCTGGCGGGGAAGCGACCAACAGGCGGCTCGACGCCGCGTTCAA
GGGTATCAAGTCCAAGGACAGCGGCAAGGGAGGAGACAAGTCCTCCAAGG
ATTCCGGTGATGCCGCGAGCAAGGACACCACCGCCTCGTCGTCCAAGAAA
AAGGGCAAAAAGAAGGGGGGCGGGGGCAAGACGGCCGGAGAGGACAAGAA
GGCCGATGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCAGTGACAAGA
AGGCGGCTGCAGCGGCGGAGAGCGAGGGCGCCACCACTGCCGCCAAGGAC
GCTAGCGATGGCGACCTCGAGAAACCCGCGTCGGAGGGGGTAAGCGTAGC
CGGCGACGGGGCCCCCGCAGATGCCGGGAAGGAACAAGCCGCTACCGCCA
CCGCCTCCGCCACCGCCTCCGAAGGCGACGACAAGGACAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGCCCCGCCGCTGGTGGCGAGACCGCTAC
CGCTGCGGGCGGTGACGCTGCCCCGGAGACCACCGCCGTTCCTGCCGAAG
ACGAATCCTCTTCGAGTGCCGACGCCGGGGCCGGCAAGGGCGGGGCGGCG
TCGGAGTCGGCTGCGGCGGGGGCCGGCAGTGAGTCTCCCGTGGCGGAGGA
GGGTGCCTCGGACGCCGGCGCTAAGGACGACGTGGCCGACGAGGCCGCCG
ACGCTAGTCCTAGTGCTAGTGCGGAGAAGCCCGCTGCTACGTCGGGTGAT
GTTGAGGAGGACAGCGCCGCTGCCGCCGGCGGGGACGAGAAGAAGGAAGA
TCGTGTAGCGGCAGCCGCGGAAGGTGGAGAGAGCGGCGGCAAGCCCGACG
GGAAGTGGGAGGCCTCCTCGACAACAACCGGGAAGTCTTCTGCTTCCAAG
GAGAAGGATAGCAGTAGCGGCGGCGGTAAGAAGGCGACCGGGGGCACCGT
CGCGACAAGCGGCAAGGGCGGTAAGGGGGGCGGGCGCGGCAGCAAGAAGG
CCCCGCCGGTGTTCTTGTTCTTTTCGGTGTACCAGTCAGCCCAGTTCTGC
GGAGCCGCGCAGCTGTGCGGTCCTCTGGACCACCAGGGCAAGAAGGTCAA
GGGCCGCGCACACGACCGCTGGCGGTCACACTTCCCCGTCAAGTGGGTAT
TCGCCAAGGACCTCCCCAACCAGCAGCTGAAGCACATCACGCTCCCGAAC
AACAAGCCAGTCGCAGCGGCGAAGGATTCCCAGGAGGTGCCGTTTGAGCA
GGGTTTGCAGATGCTGAAGGCGTTCCACGAACACAAGCACGTAACGTCGA
TCGTAGACGACTACGCCTTCTACGAGAACAGGGCTCTGCAGCACCAGCAC
CGGCCGAAGCACCAGCACCAGCAGTACGGCAACAACCACCCTGCCAACCA
GTTCGGAAACCCCTACGCAACTCACTTCACCCCGCAGCAACAGCAGCAGC
AGCACATAGTGGCCCAGCAGCAGTATCAGCAGTACCAAAACCAGCAACAA
TTC
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