mRNA_Ecto-sp13_S_contig67976.17729.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67976.17729.1
Unique NamemRNA_Ecto-sp13_S_contig67976.17729.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67976.17729.1 vs. uniprot
Match: UPI0014240E84 (hypothetical protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014240E84)

HSP 1 Score: 250 bits (638), Expect = 3.870e-83
Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 1 
Query:    1 FKQPYPNGPLVGAPMSGYCGSNQGGGVAKSVVIAVKNNGNETAGHFMVKVDFLDYPGTSARAYGPINPGPSADLDSFVIPQQAWKNGVARFTVEIDSNKEIDEGLSGEANNYMEGYCVAPAG 366
            FKQPYPNGPLVGAPMSGYCGSNQGGGVAKSVVIAVKNNGNETAGHFMVKVDFLDYPGTSARAYGPINPGPSADLDSFVIPQQAWKNG+ARFTVEIDS  E+DEGLSGEANNYMEGYCVAPAG
Sbjct:   71 FKQPYPNGPLVGAPMSGYCGSNQGGGVAKSVVIAVKNNGNETAGHFMVKVDFLDYPGTSARAYGPINPGPSADLDSFVIPQQAWKNGMARFTVEIDSQNEVDEGLSGEANNYMEGYCVAPAG 192
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BLAST of mRNA_Ecto-sp13_S_contig67976.17729.1 vs. uniprot
Match: A0A812M342_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812M342_SYMMI)

HSP 1 Score: 127 bits (320), Expect = 3.130e-32
Identity = 65/120 (54.17%), Postives = 81/120 (67.50%), Query Frame = 1 
Query:    7 QPYPNGPLVGAPMSGYCGSNQGGGVAKSVVIAVKNNGNETAGHFMVKVDFLDYPGTSARAYGPINPGPSADLDSFVIPQQAWKNGVARFTVEIDSNKEIDEG-LSGEANNYMEGYCVAPA 363
            QPYP+G L GAP SG+CG N GGG AKSV+I V+N+G+  AG F VKV F     T   +YGP+ PGP+    SF IP  AW +GVA F ++IDS  E++EG   GE NN++ GYCVA A
Sbjct:   72 QPYPSGVLEGAPSSGHCGPNNGGGAAKSVLIRVRNDGSAEAGVFRVKVVFTVSGKTFETSYGPMAPGPATWWTSFPIPADAWSSGVAPFQLQIDSKDEVEEGGARGERNNFLSGYCVARA 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67976.17729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0014240E843.870e-8396.72hypothetical protein n=1 Tax=Pelagibius litoralis ... [more]
A0A812M342_SYMMI3.130e-3254.17Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67976contigEcto-sp13_S_contig67976:241..609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size369
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463933.760992-CDS-Ecto-sp13_S_contig67976:240..6091681463933.760992-CDS-Ecto-sp13_S_contig67976:240..609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67976 241..609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67976.17729.1prot_Ecto-sp13_S_contig67976.17729.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67976 241..609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67976.17729.1

>prot_Ecto-sp13_S_contig67976.17729.1 ID=prot_Ecto-sp13_S_contig67976.17729.1|Name=mRNA_Ecto-sp13_S_contig67976.17729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
FKQPYPNGPLVGAPMSGYCGSNQGGGVAKSVVIAVKNNGNETAGHFMVKV
DFLDYPGTSARAYGPINPGPSADLDSFVIPQQAWKNGVARFTVEIDSNKE
IDEGLSGEANNYMEGYCVAPAG*
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mRNA from alignment at Ecto-sp13_S_contig67976:241..609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67976.17729.1 ID=mRNA_Ecto-sp13_S_contig67976.17729.1|Name=mRNA_Ecto-sp13_S_contig67976.17729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67976:241..609+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCAAGCAGCCTTACCCCAACGGCCCGCTGGTCGGTGCGCCGATGTCCGG
TTACTGCGGCAGCAACCAGGGCGGCGGCGTGGCCAAGTCCGTAGTCATCG
CGGTGAAGAACAACGGTAACGAGACGGCCGGCCATTTTATGGTGAAGGTC
GATTTCCTGGATTACCCCGGAACCAGTGCCCGTGCCTACGGTCCCATCAA
TCCCGGCCCTTCTGCCGATCTGGATTCCTTTGTCATTCCGCAACAGGCTT
GGAAGAACGGCGTAGCGCGTTTCACCGTGGAGATCGATTCAAACAAAGAG
ATCGACGAAGGCCTCTCGGGTGAAGCGAACAACTATATGGAAGGCTACTG
CGTCGCCCCGGCCGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67976:241..609+

>mRNA_Ecto-sp13_S_contig67976.17729.1 ID=mRNA_Ecto-sp13_S_contig67976.17729.1|Name=mRNA_Ecto-sp13_S_contig67976.17729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67976:241..609+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCAAGCAGCCTTACCCCAACGGCCCGCTGGTCGGTGCGCCGATGTCCGG
TTACTGCGGCAGCAACCAGGGCGGCGGCGTGGCCAAGTCCGTAGTCATCG
CGGTGAAGAACAACGGTAACGAGACGGCCGGCCATTTTATGGTGAAGGTC
GATTTCCTGGATTACCCCGGAACCAGTGCCCGTGCCTACGGTCCCATCAA
TCCCGGCCCTTCTGCCGATCTGGATTCCTTTGTCATTCCGCAACAGGCTT
GGAAGAACGGCGTAGCGCGTTTCACCGTGGAGATCGATTCAAACAAAGAG
ATCGACGAAGGCCTCTCGGGTGAAGCGAACAACTATATGGAAGGCTACTG
CGTCGCCCCGGCCGGCTGA
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