prot_Ecto-sp13_S_contig6796.17727.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6796.17727.1
Unique Nameprot_Ecto-sp13_S_contig6796.17727.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length308
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6796.17727.1 vs. uniprot
Match: D7FGZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGZ8_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 1.090e-102
Identity = 156/165 (94.55%), Postives = 161/165 (97.58%), Query Frame = 0 
Query:   94 MRWRCSNGDESPTSDNTSPDGIISFTDGAITAIEATAHTNTTTLEFLGLMYIGGFYFSEESISTEGPFGDGGNYSTVSTSTSCEDGAYATGVRQWYTESAVYGIMLQCAELSETCSPGVAAADALADALGNSDGGFFSEFSEWSIVGGAALGVWVFTFFAALVWC 258
            MRWRCSNGDESPTSDNTSPDGIISFTDGAITAIEATAHTNTTTLEFLGLMYIGGFYFSE++ISTEGPFGDGGNYS+VSTSTSCEDGAYATGVRQWYTESAVYGIMLQCAELSETCSPGVAAADAL DAL NSDGG F EF++WSIVGGAALGVWVFTFFAALVWC
Sbjct:    1 MRWRCSNGDESPTSDNTSPDGIISFTDGAITAIEATAHTNTTTLEFLGLMYIGGFYFSEDTISTEGPFGDGGNYSSVSTSTSCEDGAYATGVRQWYTESAVYGIMLQCAELSETCSPGVAAADAL-DALANSDGGGFFEFTDWSIVGGAALGVWVFTFFAALVWC 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6796.17727.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGZ8_ECTSI1.090e-10294.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..235
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..16
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 261..307
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 17..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 236..260
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..33
NoneNo IPR availableTMHMMTMhelixcoord: 13..32
NoneNo IPR availableTMHMMTMhelixcoord: 239..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6796contigEcto-sp13_S_contig6796:1020..5952 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6796.17727.1mRNA_Ecto-sp13_S_contig6796.17727.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6796 1020..7047 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6796.17727.1 ID=prot_Ecto-sp13_S_contig6796.17727.1|Name=mRNA_Ecto-sp13_S_contig6796.17727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
MRRRTTITTTNRSRGGSVVAVLGALVLLSWTGGGSLKILPAVKGENYCDA
GPASSTAGNPDLASDFTIEHDFACEDGYFLVGVEVWAGAFVESMRWRCSN
GDESPTSDNTSPDGIISFTDGAITAIEATAHTNTTTLEFLGLMYIGGFYF
SEESISTEGPFGDGGNYSTVSTSTSCEDGAYATGVRQWYTESAVYGIMLQ
CAELSETCSPGVAAADALADALGNSDGGFFSEFSEWSIVGGAALGVWVFT
FFAALVWCCFFRAKKSSTAATAGEEEQKEGEAGGGRASSTAATAGGEEEG
GPGRGGG*
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