mRNA_Ecto-sp13_S_contig6796.17727.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6796.17727.1
Unique NamemRNA_Ecto-sp13_S_contig6796.17727.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6796.17727.1 vs. uniprot
Match: D7FGZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGZ8_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 6.740e-101
Identity = 156/165 (94.55%), Postives = 161/165 (97.58%), Query Frame = 3 
Query:  639 MRWRCSNGDESPTSDNTSPDGIISFTDGAITAIEATAHTNTTTLEFLGLMYIGGFYFSEESISTEGPFGDGGNYSTVSTSTSCEDGAYATGVRQWYTESAVYGIMLQCAELSETCSPGVAAADALADALGNSDGGFFSEFSEWSIVGGAALGVWVFTFFAALVWC 1133
            MRWRCSNGDESPTSDNTSPDGIISFTDGAITAIEATAHTNTTTLEFLGLMYIGGFYFSE++ISTEGPFGDGGNYS+VSTSTSCEDGAYATGVRQWYTESAVYGIMLQCAELSETCSPGVAAADAL DAL NSDGG F EF++WSIVGGAALGVWVFTFFAALVWC
Sbjct:    1 MRWRCSNGDESPTSDNTSPDGIISFTDGAITAIEATAHTNTTTLEFLGLMYIGGFYFSEDTISTEGPFGDGGNYSSVSTSTSCEDGAYATGVRQWYTESAVYGIMLQCAELSETCSPGVAAADAL-DALANSDGGGFFEFTDWSIVGGAALGVWVFTFFAALVWC 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6796.17727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGZ8_ECTSI6.740e-10194.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6796contigEcto-sp13_S_contig6796:1020..7047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1283
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002920.1
Cds size924
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6796.17727.1prot_Ecto-sp13_S_contig6796.17727.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6796 1020..5952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463933.6147723-CDS-Ecto-sp13_S_contig6796:1019..12881681463933.6147723-CDS-Ecto-sp13_S_contig6796:1019..1288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6796 1020..1288 -
1681463933.6266463-CDS-Ecto-sp13_S_contig6796:1746..19161681463933.6266463-CDS-Ecto-sp13_S_contig6796:1746..1916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6796 1747..1916 -
1681463933.644684-CDS-Ecto-sp13_S_contig6796:5013..52081681463933.644684-CDS-Ecto-sp13_S_contig6796:5013..5208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6796 5014..5208 -
1681463933.6592798-CDS-Ecto-sp13_S_contig6796:5662..59521681463933.6592798-CDS-Ecto-sp13_S_contig6796:5662..5952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6796 5663..5952 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463933.671057-UTR-Ecto-sp13_S_contig6796:5952..59691681463933.671057-UTR-Ecto-sp13_S_contig6796:5952..5969Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6796 5953..5969 -
1681463933.6859856-UTR-Ecto-sp13_S_contig6796:6705..70471681463933.6859856-UTR-Ecto-sp13_S_contig6796:6705..7047Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6796 6706..7047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6796.17727.1

>prot_Ecto-sp13_S_contig6796.17727.1 ID=prot_Ecto-sp13_S_contig6796.17727.1|Name=mRNA_Ecto-sp13_S_contig6796.17727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
MRRRTTITTTNRSRGGSVVAVLGALVLLSWTGGGSLKILPAVKGENYCDA
GPASSTAGNPDLASDFTIEHDFACEDGYFLVGVEVWAGAFVESMRWRCSN
GDESPTSDNTSPDGIISFTDGAITAIEATAHTNTTTLEFLGLMYIGGFYF
SEESISTEGPFGDGGNYSTVSTSTSCEDGAYATGVRQWYTESAVYGIMLQ
CAELSETCSPGVAAADALADALGNSDGGFFSEFSEWSIVGGAALGVWVFT
FFAALVWCCFFRAKKSSTAATAGEEEQKEGEAGGGRASSTAATAGGEEEG
GPGRGGG*
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mRNA from alignment at Ecto-sp13_S_contig6796:1020..7047-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6796.17727.1 ID=mRNA_Ecto-sp13_S_contig6796.17727.1|Name=mRNA_Ecto-sp13_S_contig6796.17727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6028bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6796:1020..7047- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAGACGAGAGAGTCGCAAACCTTTTGAGAGATGAAAAAAGCACCAAAT
GAACAAGACAGCCGGCTGTGCAAATAGGAATACAACGCAGAAGGGGTATT
ACAGCGTGAGCCATCGGAAAATTCTTCTCATTTTCTCTCTCAAGCCACGG
AACCGGAAACACTCTTTGTTGGCCTGTTGGGACGTTCGCATTCCCCTCCA
TGAGTGAGAGGACGAGAGGACGAGAGGACGAGCGGACGCCGATCAACTGA
GACCTGAAAGCCCATCAATCGTCCAGTTTTCTGCGAGATCCCAGCTATTA
TCGACGTCTACCCCGCGAGAGGAGGGAGACGACAGGTAGGGTTGCTTATT
AGGAGTGGGAGATACGCTATAGGACGACTGGACCCTTGGTCGCAGTTACT
TGTGACGCGGCGGGTTGTGGTCCGTCGTTACTCTAGGAGTGCCCGAGACA
GAACAACTTCAGTAGCTACAGCAGCAGTACAGAGGCTGCTGACATGAGAT
GCCTGGCGGTACAATGGATGCCTGAATCTACAGTGCGAAAAGATGTTTGC
AGCAGATTCAGTGACGCGCAGCGAACCTGGTCTCCACTCTGTGTAAAGAC
CCATATGGTATTCATGTGTTGACGGCAGCGCTTCTTCACTGACACATGCA
CACGTAGTCTACTCTACACGCACCTTGTCGCTTTGAATGAGTATAGTGTT
GCTGCTTAGAGGGATGCGTGGTAGTAAACAGCTGGGACTGCTACAATCAA
TGCCGGTCGGCAGTCACACAGCACCGCGCTCTACATGACGATACATGCAT
ATGCTGATATTCTACCATGCACTATTGTATCACCAATTGTGATCATGTCT
AATTGTTCTACCAACTGCACTGGGGGCTTTGCTGTATTCGCACCAGCTTC
GCCACTTTTCATGCAGAAAGCAAACATCTGTAGTCGCGGTAGACAACAAT
CGCATGCGCATGGATATGCCGCCAAGAAAAGCAGCTCCTCCAACTAAAAC
TGCGAGGCTCTCCTTCACAACACTCACGTATCTCAACGGTCATTTTTTTT
TCGTCTTCTGTCATTCATCACACGACGCGACGAAGATTTGGAACCATGCG
ACGGCGTACCACCATCACCACCACCAACAGGAGCCGAGGCGGCAGCGTAG
TCGCTGTGCTCGGAGCCCTGGTTCTCCTCTCCTGGACTGGCGGCGGTTCG
TTGAAAATCCTGCCTGCTGTTAAGGGCGAGAACTACTGCGATGCCGGTCC
GGCCTCTTCCACGGCGGGAAATCCCGACCTGGCCTCCGACTTCACCATCG
AGCACGACTTTGCCTGCGAGGACGGCTACTTTCTCGTGGGCGTTGAGGTG
TGGGCGGGCGCCTTCGTGGAGTCGATGAGGTGGAGGTAAGAAAGCTGCCA
CGGCAGCCAATACGTTGCAATAGTACGACCAGTCAGTGGGTTTTCGAAGC
GAGAGAGAGGAGGATGCACTTGTAGGTTCCACTTCATTTTGTGCGTGCGT
GAAAAGTGTGACGATGGTGGTTGGGGCTGGGATATCAGGCCGTGGATTCC
CTCCTTGACGCACCAACGTGTGGTCAGTGCTGATTGTCGATCGCAGTACA
TACTCCTGTAGTGCGGTGAAACGGCCTTGCGACGGGCCGACCGATCGGAA
CGTAGACCACTCAATCTCGACGCGAAAGTCTCGTCCACGGACCTTGAAGA
AGGTAAACACAACATGACGCGCAAAAGCACCACCAGAAGCAACAACAACA
TCAACAACACCACCAACACCAACACCAACAACAACAACAACAACAACAAC
GACAGCGACATCGACAATTTGTAAACCGTATGCAAATAGGTGCTCGAACG
GCGACGAGTCACCTACTAGCGACAACACAAGCCCCGACGGAATCATCTCC
TTCACGGACGGCGCCATCACCGCCATCGAGGCCACGGCCCACACCAACAC
CACCACCCTGGAGTTCCTTGGGCTCATGTACATCGGGGGCTTCTACTTCT
CCGAAGAAAGCATTTCAACGGAAGGCCCGTTCGGGTATGACCACTGTCTG
TCCGCGTAGCGTGCACGCAACTCCCCAGAAGGTTCCTCGGGGGCAATTGT
AGACAGTAACATTGGCCCCCCCTTACTTGCTGGAGGGGGGGGGGGCAGAC
GAAGAAGAGGACACGTCGGTGTATCAGTAGTGCGGTTAATGTGCAACCTT
TCTTATACACACAATCTTTCTGATACACACCACTGTAGAAGGCAGGACAT
AACTATCTCCCTAGCCCACATCCGGAGACTGGCCTGGCAGATAACCCCCT
TTGGTCCTTAAGAGATTCTGTCGAGGAAGATTCGCGGAACGCTGCGAACA
TTCGGATAGATAGATGAGTCTTGAATATCGTGGAAAGTGCATCCAAGAAT
GAGGGAATGCACTCTCTCACGTTTCCCTTTGGCGGAGCTTATCCCAGTAA
CCTCAGTAACGATTGGCACTCCTCGCCACATGCCCCCTCTCTCCGATAAT
AACGGTTGCACCGCATCTTGTTCAAGGACTCTCGGTTTAGCTCCGTGCGT
GTAGAGCTAACCTTGCCCCCACTCCTCCGCTCACCGCAAGATCACTTCGA
CGCGACATCACAGACCACCCCCCGCTCGTCGGTCTGTCTTGCCAATTGTC
GGGGATCGTACCCCATCGTGGAGATGATGACGTTGTTTTCGTGTGTACGA
GGAGCGTATGTTGGGTGTGTTGGGTGCTCGTCCCTTCCATCTAATCTAGC
GCCAATCTACACGACTTGCGGGTGTGTAGTTTCACGTATCAGCCGGGGTT
GCAAAGACGGGAGGAAGGCCGTGCAGGAGCTTCGCTTTCTCTTTTTTCAC
AGCTTTCTATGGCACGAGAATTCTGCAAAAAATATTGCAAACTTTTGCAA
ACTTTTCCTGCAACTTTGCTCGGGAACTTTCGTCAGTGACACTTTTGATG
CAGGCCCATTATGAGACGAACATAGTTTTGTGCACGGGACTGGCGGAATG
CGGGGGCGTGATGTTTATAGCGCATATTTTTTTAGCAACGGCGAAAAGAA
GTCAAACGCCTTTCGTATCTCACCACGAGTAACTTTTTTTTCTCCACACT
CGCGATACCCCAAGGCATCTAACCTGGGTTCAGAAAGATTCTGGGCAGAG
TTGGCTTCCTCGCGGTGTTATTGCTGTTACCGTTACCTCCTCAGAAAAGT
TGTCGCTGGAAAACCAAACCACGCGCAAATACCTCCGAACTTGAACCATC
CGCTCTCTGGCGTAGGTATTTAAGGGTCAATCAAAGCTGTTTTCCCGACG
CGCACGATACCCCACGGCACCAAACCTTGTGCATAAAAGATGGAGCAGAG
AGCTACCTCCCCGCCGAGTGGCCTTGCCGTTGCTGTTGCTTCCTCCTCCG
GAAATTTATCGGTTGATAACCACACCCGTGGCGGTCAAAAACATCGAACT
TGAACAAACCGCTCGCGGCCCTCAAAAAGTCGTGCACAGCACAAACTGTT
TTTCCTCGCGCATTCGGCACCTCACGGCCCCAAACCTTGGCATTGCCCAA
CAGCCTATGGCCTCACCTCCTTCCAGATACCATTTATAGGGCAACTCGTC
AAGTATTCGTCGAGATATCGGTGATCACGGCCTTCCCACAATCGAAGCTG
GCGATGGGGTCCACGTGTGTGGTAGAGGTAGCAGCTTGACGTGGATTGGC
GGAAGTTGCGCCGCGCAACTTTTGTTCGACACCTTCGCCGCGAAAGAAGT
TGCAGAACGTTTCCTCCAGATTGCAACTTTTTGCTATCGAGAACAAGTTG
CAAAACTGTTTGCGCAACTTTTTGCTCCCATATTGAGCGTACAATGGGAA
AGCTGCGAGAAAAGTTGCAAAACTTCAACTTTTCTTGCAACATTCTGCAG
CCGTAAAAAGCGGTGTAATGAGCTGCGGAGCACGAAGCTCGACCGTTATT
TTCCCTCCGTCCTAGGTAGGGACGAACAGGCTATACATCCCAACCCACCT
TTGGGGCCCGAAGGAGATCTATAGGGCACCGATTTACGATCGGTTGGAAT
CTAAAAGAGGGAGAAAAATAGTGCGCTCCTCGTCACACCGATTATGAACC
TGCTTCGGCGAGAGATGGCGGTGCTACTCAGGTGCTCGTGCCCAAAATCC
ATCGAAAACCGCTAACCCTGTCCCTGGGAGTTCAGGAAGAAAAGCGGCAT
TCGAAAAGCGCAGATATCAACCACGCGCGATTCAAACCAGGAGAAGAAAT
AGAGGTAGTATACCCCAGAATCACACCCACCCGCCGTGGTCCAACCCCTC
CCATAGGTAGAGACACAGCAGTAACAGCAGACCCGGTGCCCTTTCTCTGG
CTACAACACGTAGAGTTTTGCAGTTCTATTGGCCTTTGCAAGAATCGATT
GGTGAAATAGGATAGACTGAGGTCTCGCTTACAGCAGCAACAAACAGCAG
CGGAGAGCGGAATTGCGGCGGTTGGTGCCGTTGACGCCGTCGCCACGGGG
GACTCAGAACGATATAGGGATGACGTCTTAGGCTGGACAACAATAGGGCG
GGGGATAAGGGAAGCAAACAAACGACGCCGCCTCCACAAGCAAGCGAATC
ATGAGAGAGGCTGATGTGTTGACGAACGGTCGATGCGAGAGAACGAGCTG
GCTCTGTTGGAAATTCTGCTCTCGTGCCACTTTTCCACCGGTTTTCCACA
CCGCGCTACCCGATAGGTTCCATCTAATGTTTTCGTGCTGCCACACATCG
TTCATTTTTGGCCGGCGGCAGGGCTGTTGCCGATCGTTTGGCGGTACTGC
TGTAGCATCGCGTGGGCTGCGGCATGTGCGTGTGTTCCTCGGCCGTTCGT
CGGTGTAGCCATTGCCACCGGCGGGAGGGGATGCGCAGCCTTGAAATCCG
CACAAAATATTCCGGATACGCATGTATGAAGTACGGAGGAAGTCTCCAGC
ATCGCAGGTAGGGGGCAGGTTTTGAGCCGACCACACGGCTCATGACTCCT
CCCTGTCTACTGAAGTAGTTTCGATGCCCCAGCTTTCCCGGAATTTCAGC
CGAGCATGGTAGTGATAAGGAAACGAATGATCACACACCCCGCTTCCCTC
CCTCGTCTGTTTCGTTTTTTTGTTCATGCAGAGACGGCGGCAACTACTCG
ACCGTCAGCACCTCCACCAGCTGCGAAGACGGGGCCTACGCAACCGGAGT
CCGCCAGTGGTACACGGAATCGGCGGTTTACGGGATCATGCTGCAGTGCG
CCGAGCTCTCGGAGACATGCTCACCCGGCGTCGCCGCTGCCGACGCACTA
GGTACGTGGGAGGGAGAGGGGGCGTTCTTGATTGGTCACTATTAAAAAAT
AGATTCAACGACATGGCTGACATCTGCGTGGCGTGGAAGTTCAACTGGGG
AGGGTAAGTGTTTGGGTTGTTCATGCGAAAAGGTACAGTAGTCCCCCTTG
ACAACAGACATCGGTCCGGGTAGTTCACAGAGAGTTGGATTCGTTGTGTC
AATTCTGGGTCTGCCTCGTGTACGATAAGGAGAGCCTAGAAATGCCTAGT
AAGCCCCCAAGAAGAAATGTTTGGACACGTTGCTTGTGTGTTCCGATCAT
GAATCGCGAAATGAGATCAGCCTTTTGCCAAGTCTACAACTGTGAACCTT
GGACAACCCCCTTGCCCCAGCCCACATTCTTGCCGCAATCACTAACAACA
TCATTGCTACGTGTGCCATGCATCTTGAACATCAAACACGACGGTGATGG
CGGTCGAAGCAGACGCTCTTGGTAATAGCGACGGAGGGTTTTTCTCCGAG
TTTTCGGAATGGTCTATCGTAGGGGGTGCAGCGCTAGGGGTGTGGGTGTT
TACCTTCTTCGCGGCATTGGTGTGGTGTTGCTTCTTCCGGGCGAAGAAAT
CTTCCACGGCAGCGACCGCAGGGGAAGAGGAGCAGAAGGAAGGGGAGGCA
GGAGGAGGACGAGCGTCGTCCACCGCAGCGACCGCAGGGGGGGAAGAGGA
AGGAGGACCGGGACGAGGAGGAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6796:1020..7047-

>mRNA_Ecto-sp13_S_contig6796.17727.1 ID=mRNA_Ecto-sp13_S_contig6796.17727.1|Name=mRNA_Ecto-sp13_S_contig6796.17727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6796:1020..7047- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACGGCGTACCACCATCACCACCACCAACAGGAGCCGAGGCGGCAG
CGTAGTCGCTGTGCTCGGAGCCCTGGTTCTCCTCTCCTGGACTGGCGGCG
GTTCGTTGAAAATCCTGCCTGCTGTTAAGGGCGAGAACTACTGCGATGCC
GGTCCGGCCTCTTCCACGGCGGGAAATCCCGACCTGGCCTCCGACTTCAC
CATCGAGCACGACTTTGCCTGCGAGGACGGCTACTTTCTCGTGGGCGTTG
AGGTGTGGGCGGGCGCCTTCGTGGAGTCGATGAGGTGGAGGTGCTCGAAC
GGCGACGAGTCACCTACTAGCGACAACACAAGCCCCGACGGAATCATCTC
CTTCACGGACGGCGCCATCACCGCCATCGAGGCCACGGCCCACACCAACA
CCACCACCCTGGAGTTCCTTGGGCTCATGTACATCGGGGGCTTCTACTTC
TCCGAAGAAAGCATTTCAACGGAAGGCCCGTTCGGAGACGGCGGCAACTA
CTCGACCGTCAGCACCTCCACCAGCTGCGAAGACGGGGCCTACGCAACCG
GAGTCCGCCAGTGGTACACGGAATCGGCGGTTTACGGGATCATGCTGCAG
TGCGCCGAGCTCTCGGAGACATGCTCACCCGGCGTCGCCGCTGCCGACGC
ACTAGCAGACGCTCTTGGTAATAGCGACGGAGGGTTTTTCTCCGAGTTTT
CGGAATGGTCTATCGTAGGGGGTGCAGCGCTAGGGGTGTGGGTGTTTACC
TTCTTCGCGGCATTGGTGTGGTGTTGCTTCTTCCGGGCGAAGAAATCTTC
CACGGCAGCGACCGCAGGGGAAGAGGAGCAGAAGGAAGGGGAGGCAGGAG
GAGGACGAGCGTCGTCCACCGCAGCGACCGCAGGGGGGGAAGAGGAAGGA
GGACCGGGACGAGGAGGAGGGTGA
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