mRNA_Ecto-sp13_S_contig6792.17725.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6792.17725.1
Unique NamemRNA_Ecto-sp13_S_contig6792.17725.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6792.17725.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 2.410e-68
Identity = 179/191 (93.72%), Postives = 179/191 (93.72%), Query Frame = 1 
Query:   13 PPSFYPLGPPVMITWKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSPDXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXXXELIAAEEEGLPVSTPAYNAALKAFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSKAVGILRAMEGAG 585
            PP F P  PP  IT KADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSP XXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXX  ELIAAEE GLPVSTPAYNAALKAFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTS AVGILRAMEGAG
Sbjct:  617 PPPFPPRDPPSTITCKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSPXXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXVQELIAAEEGGLPVSTPAYNAALKAFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRAMEGAG 807
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BLAST of mRNA_Ecto-sp13_S_contig6792.17725.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.030e-57
Identity = 166/177 (93.79%), Postives = 167/177 (94.35%), Query Frame = 1 
Query:   58 KADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSPDXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXXX-ELIAAEEEGLPVSTPAYNAALKAFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSKAVGILRAMEGAG 585
            KADTYTYVTAMKAVGAAGQWEIAVSLLAELRELE     XXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXX  ELIAAEE GLPVSTPAYNAALKAFAIGKALQPGL+FFRRMQEEGRVPLDEQTHNIAIELCKECGDTS AVGILR MEGAG
Sbjct:  582 KADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXXQVELIAAEEGGLPVSTPAYNAALKAFAIGKALQPGLEFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRTMEGAG 758
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6792.17725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9B5_ECTSI2.410e-6893.72PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZI4_9PHAE1.030e-5793.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6792contigEcto-sp13_S_contig6792:5516..7490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score236.9
Seed ortholog evalue8e-60
Seed eggNOG ortholog2880.D7G9B5
Model size585
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size579
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463933.4568703-UTR-Ecto-sp13_S_contig6792:5515..55211681463933.4568703-UTR-Ecto-sp13_S_contig6792:5515..5521Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6792 5516..5521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463933.4698534-CDS-Ecto-sp13_S_contig6792:5521..57361681463933.4698534-CDS-Ecto-sp13_S_contig6792:5521..5736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6792 5522..5736 +
1681463933.4801795-CDS-Ecto-sp13_S_contig6792:6023..61471681463933.4801795-CDS-Ecto-sp13_S_contig6792:6023..6147Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6792 6024..6147 +
1681463933.4906964-CDS-Ecto-sp13_S_contig6792:6655..67811681463933.4906964-CDS-Ecto-sp13_S_contig6792:6655..6781Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6792 6656..6781 +
1681463933.5040715-CDS-Ecto-sp13_S_contig6792:7376..74901681463933.5040715-CDS-Ecto-sp13_S_contig6792:7376..7490Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6792 7377..7490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6792.17725.1prot_Ecto-sp13_S_contig6792.17725.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6792 5522..7490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6792.17725.1

>prot_Ecto-sp13_S_contig6792.17725.1 ID=prot_Ecto-sp13_S_contig6792.17725.1|Name=mRNA_Ecto-sp13_S_contig6792.17725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
MTPPSFYPLGPPVMITWKADTYTYVTAMKAVGAAGQWEIAVSLLAELREL
EGVSPDVYVYTAAISACSTAGRWEEALDLEGEMRRRGIKPNAYTVTSCIS
ALARGGEWQRAVQELIAAEEEGLPVSTPAYNAALKAFAIGKALQPGLDFF
RRMQEEGRVPLDEQTHNIAIELCKECGDTSKAVGILRAMEGAG
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mRNA from alignment at Ecto-sp13_S_contig6792:5516..7490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6792.17725.1 ID=mRNA_Ecto-sp13_S_contig6792.17725.1|Name=mRNA_Ecto-sp13_S_contig6792.17725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6792:5516..7490+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACAATGACCCCCCCCTCCTTTTACCCCCTGGGACCCCCCGTCATGAT
TACGTGGAAGGCGGACACGTATACGTACGTGACTGCGATGAAGGCAGTCG
GGGCGGCGGGGCAGTGGGAGATTGCTGTATCGCTGCTTGCCGAGCTGCGC
GAGTTGGAAGGGGTATCGCCGGACGTTTACGTTTACACGGCGGCTATCTC
TGCATGTTCTACCGCTGGAAGGTAGAGACAACTCGCCTTGCGGGCGGTGG
TGTTGTTTTCGTCGTCGTTGTTGATGATAATGTTGTTGGTGTTGTCGATA
TTGATGTGTATTGTTGCCATTGATGTTGGTGGTATTTCTGATGGTGTCTG
TTTTTTGGCTGTGGTAACGGGTGTTGTCGTCATGGTCAGCCCCGTTACCA
CGAACAACCTAGCATGATGCTGGTGCCAATCCTGGCAATAGAGGAGCGAT
AACGTTCTTCCTCCAATCCTCTGGCTCATGTTCCTACTCCTACGTGAACA
CCTCACAGGTGGGAAGAGGCGCTGGATTTGGAGGGAGAGATGCGTCGGCG
TGGGATAAAGCCCAATGCCTACACGGTTACTTCTTGCATCAGCGCTTTGG
CACGAGGAGGGGAGTGGCAACGGGCCGTCCAGGTGATTGGTTTTATCATT
TGTGTATGTTTAATTTGTGTGTAAAGGTGTTTGTGTTGTTGTAGTTGTTT
CCCCTTGTCCTGCTGTCATTGCTGTTGCTGCTAATGTCGTGGCTGCTGCT
GCTGCTACAGTTGTTGGTGGTGTTGCTCCTGCTGCTGCTGCTGCTGCTGC
TGTTTTATTTGGCGTCACAATGTGTGCTAGGGTGGTAGCCTTATTTGTTG
GCGCTAGTGCTGACGTTGGTGCTGGAGTGGCACTGATTCTACTCGTGTCC
CCAAGACGGAATGTTGCCGCATTCGTTCAGAGGTACTCTTCCCTTGTCCC
GTCTGCTCTGTCGCTCGGTGTTAGTGCCTCGCGAACGTTAACACTGACGT
TACCTATAGCAGCATGTTTTTTTTCCCTGTCTCTGTCTCTGTTTTCCTGT
CTTTCTCTCTCCCCCCCTCTGTGTGTGTGTGTCTCCCTCTCTGTCTCTCT
TGTGTTTTGCGTTTGCCTGTATCTCGGTCTCTGTCGTTAGGAGCTAATTG
CGGCGGAGGAAGAAGGCCTCCCGGTGTCCACCCCCGCCTACAACGCGGCA
CTGAAGGCATTCGCCATCGGGAAGGCGTTGCAGCCCGGCCTCGACTTCTT
CAGGCGCATGCAAGAGGTTTGTGAGTGATGTGCGTGTTTTTATTTTTTTG
GCATCGACCGCGCCAACCGGCTGGCCAATGAAAGTGCGTCAGTCTCACTG
CGGTTGGGGACACAAAAGGCTTCTAGAGGGCACGATCTGGCCCGCCGGTG
AGGGGGTTTCATGGAGGAGGCTAAGCTACTCTCCGGAAAAAAATCAGAAA
CTGTCCTGTGGCGGGAAAATCCGCACGCGTCGTGGGAAACCCGCGCGGCA
AAATGGATTGTCATCCAAGTATAATTTTTGGCCGGTATCAGCTTAACATT
GAGTCATCGGCGATATGGGATACACGCACACACGCGTTTACCCTCTCTAT
CATCTGCTGTTGTCTCTCTATCTCTTTCCTTCGTCCCCTCCCTCCTTCGC
CCTTGCCAACTGCCCTTGTCATTCCACCTGACGTCTTTTCACTGGCCAGC
TAGTTACAGTGTCGCGGTCGATGCTCGCAATAAAGAAACACACATACACA
TACCATCTGGTTTCCAGGATGGTCATGGACGGGGGCAACCCCCCCGAGTC
CTTCCGAGTGCTAATTCCCGTCGCCGTTCCCCCTGGGGCACCCTTGACCA
AACCTATATAGGAAGGACGAGTGCCCCTGGACGAGCAGACCCACAACATC
GCGATCGAGCTGTGCAAGGAGTGCGGTGACACTTCCAAGGCCGTGGGCAT
CCTGAGGGCCATGGAGGGTGCAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6792:5516..7490+

>mRNA_Ecto-sp13_S_contig6792.17725.1 ID=mRNA_Ecto-sp13_S_contig6792.17725.1|Name=mRNA_Ecto-sp13_S_contig6792.17725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6792:5516..7490+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCCCCCCTCCTTTTACCCCCTGGGACCCCCCGTCATGATTACGTG
GAAGGCGGACACGTATACGTACGTGACTGCGATGAAGGCAGTCGGGGCGG
CGGGGCAGTGGGAGATTGCTGTATCGCTGCTTGCCGAGCTGCGCGAGTTG
GAAGGGGTATCGCCGGACGTTTACGTTTACACGGCGGCTATCTCTGCATG
TTCTACCGCTGGAAGGTGGGAAGAGGCGCTGGATTTGGAGGGAGAGATGC
GTCGGCGTGGGATAAAGCCCAATGCCTACACGGTTACTTCTTGCATCAGC
GCTTTGGCACGAGGAGGGGAGTGGCAACGGGCCGTCCAGGAGCTAATTGC
GGCGGAGGAAGAAGGCCTCCCGGTGTCCACCCCCGCCTACAACGCGGCAC
TGAAGGCATTCGCCATCGGGAAGGCGTTGCAGCCCGGCCTCGACTTCTTC
AGGCGCATGCAAGAGGAAGGACGAGTGCCCCTGGACGAGCAGACCCACAA
CATCGCGATCGAGCTGTGCAAGGAGTGCGGTGACACTTCCAAGGCCGTGG
GCATCCTGAGGGCCATGGAGGGTGCAGGG
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