mRNA_Ecto-sp13_S_contig6792.17724.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6792.17724.1
Unique NamemRNA_Ecto-sp13_S_contig6792.17724.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6792.17724.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 5.870e-81
Identity = 143/164 (87.20%), Postives = 147/164 (89.63%), Query Frame = 1 
Query:    1 QVLDAAAKAGWEKIRFSALRMGKIAAGAAVAGRWETHGRPLVLRMGLLGVSERDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTATATATPGVHHSGRRNGSAAPAGGEKHALGAAPLDGEGRRPGERSMDFFHDLDRRDELLTVAHNHCMFAFIKAGR 492
            +VLDAAAKAGWEKIRFSALRMGK++ GAAVAGRWETHGRPLVLRMG LGVSE DVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTA ATATPGV  SGRRNGSAAP GGEKHALGAA LDG         MDFFHDLDRR+ELLTVAHNHCMFAFIKAGR
Sbjct:  336 KVLDAAAKAGWEKIRFSALRMGKVS-GAAVAGRWETHGRPLVLRMGSLGVSEGDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTAAATATPGVPRSGRRNGSAAPTGGEKHALGAALLDG---------MDFFHDLDRRNELLTVAHNHCMFAFIKAGR 489
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BLAST of mRNA_Ecto-sp13_S_contig6792.17724.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 3.670e-80
Identity = 140/164 (85.37%), Postives = 143/164 (87.20%), Query Frame = 1 
Query:    1 QVLDAAAKAGWEKIRFSALRMGKIAAGAAVAGRWETHGRPLVLRMGLLGVSERDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTATATATPGVHHSGRRNGSAAPAGGEKHALGAAPLDGEGRRPGERSMDFFHDLDRRDELLTVAHNHCMFAFIKAGR 492
            +VLDAAAKAGWEKIRFSALRMGK+AAGAAVAGRWETHGRPLVLRMG LGV E DVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTATA ATPGV HSG RNGSAAP G EKHALG AP         E  MDFFH LDRR+ELLTVAHNHCMFAFIKAGR
Sbjct:  456 KVLDAAAKAGWEKIRFSALRMGKVAAGAAVAGRWETHGRPLVLRMGSLGVPEGDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTATAAATPGVPHSGGRNGSAAPTGEEKHALGVAPR--------EHGMDFFHGLDRRNELLTVAHNHCMFAFIKAGR 611
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6792.17724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZI4_9PHAE5.870e-8187.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9B5_ECTSI3.670e-8085.37PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6792contigEcto-sp13_S_contig6792:1103..3745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score270.8
Seed ortholog evalue4.3e-70
Seed eggNOG ortholog2880.D7G9B5
Model size495
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size495
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463933.3981998-CDS-Ecto-sp13_S_contig6792:1102..11711681463933.3981998-CDS-Ecto-sp13_S_contig6792:1102..1171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6792 1103..1171 +
1681463933.4094303-CDS-Ecto-sp13_S_contig6792:1818..19771681463933.4094303-CDS-Ecto-sp13_S_contig6792:1818..1977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6792 1819..1977 +
1681463933.4190369-CDS-Ecto-sp13_S_contig6792:2819..29911681463933.4190369-CDS-Ecto-sp13_S_contig6792:2819..2991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6792 2820..2991 +
1681463933.4304247-CDS-Ecto-sp13_S_contig6792:3650..37451681463933.4304247-CDS-Ecto-sp13_S_contig6792:3650..3745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6792 3651..3745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6792.17724.1prot_Ecto-sp13_S_contig6792.17724.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6792 1103..3745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6792.17724.1

>prot_Ecto-sp13_S_contig6792.17724.1 ID=prot_Ecto-sp13_S_contig6792.17724.1|Name=mRNA_Ecto-sp13_S_contig6792.17724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
QVLDAAAKAGWEKIRFSALRMGKIAAGAAVAGRWETHGRPLVLRMGLLGV
SERDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTATATATPGVHH
SGRRNGSAAPAGGEKHALGAAPLDGEGRRPGERSMDFFHDLDRRDELLTV
AHNHCMFAFIKAGR*
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mRNA from alignment at Ecto-sp13_S_contig6792:1103..3745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6792.17724.1 ID=mRNA_Ecto-sp13_S_contig6792.17724.1|Name=mRNA_Ecto-sp13_S_contig6792.17724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2643bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6792:1103..3745+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTATTGGACGCAGCTGCCAAAGCTGGATGGGAAAAGATAAGGTTCTC
CGCACTACGAATGGGCAAGGTAAAGTAAAGTTTGCTTTCGTAGACTCTCA
TCGCTTGATAAAGATGCAGGCGAACTTTATCCCTCTCGTTGAGAAGAAGA
TGTCGCCGGGCTGTGTTTGTTGGCCGCACTTTTGTGCGGCAGCGGAGAAT
GTTAGAATGGTCCGACCCCCACCCTTATGTTGCCAACAGCAACGGACGGG
GTTCCCTTCCGAAGGAGTAGGTCAGCGGTAAAAAGGCAGGCGAGCACCAA
ATACCCGCAGTCATAGAGAGAAGATCGAGGCATGTAACAGCCGGGAGAAG
CCGAAGCTATATTGGGGTATTGTGTGATGTGGGCTGAAAGGCGATAGATG
ATACAAAGGGAATTCGAGCCAACTTTGGCAACGTAGGGTAGGAAGGAACG
AATGGCCATCGGTCCCGTGGGAACAATACTCCGTCCTCTCGAGGACGCGT
GGTCAATGGTCTAACAACTTAGGCACGTAAAACATGGCCACAAACACACA
CCCCGAGAGTAACTCACGGCGCTTCGCCCTCGGTGATGTGCTACTATAGT
CCGGCAATTACCCGGCCTTCTTCGTTCCGGCTTTGCAGAGATGCGTCGTC
TAACGACTACGGCATGCATGGCTATGAGTACCCCCTCCCAACCCCTCCGC
TGCTCCCCACGTGAAGATTGCGGCAGGAGCTGCCGTCGCCGGGCGGTGGG
AGACACACGGGCGTCCGCTCGTGCTCCGGATGGGTTTGTTAGGGGTGTCC
GAGAGGGACGTGAGCTCCTGGACTGCGGTGCTGCTGCCGTTGAGCCGGTT
GGGCTGCGCCGACGAGTGTCTCGAGGTGAAGGGTCGTGTTGATTCTGGCT
GTTGATGTTGCTGCTGCTGTAAGTGCTGCAACGGGTGCGGATGCTGCTTG
GGTGTGGAGGTCTGGTATTCTGTCGAGTAGATGGTCGAGAAAAGTGTTTT
TGTTTGTCGTACCCATGGGATGAAGCGACGAGTTTTTTTTTTTTTTCGTC
GGTGCTCTGATGAAATTGGGTGGATACGAAGGATCATTGGCTAGATGGTC
GTTTTTCGTCATGCCGTTTCATGGAAAAAGCTTCTTGAGTCGTGATTTCG
AGCTCTTGAGAAGCGTAACACCGAAAAATTCCAAGATCGGAACGACTCTC
TGTGTTCTACAGATGGCCACCAATTTTTTGCGCTAGCGATCCCCATGTAA
GGCCACATCACACTGTGTACAGGCTTTACATAATGTTTTGGTTCGTTTAC
GTTCCCTGGGCTCTTGGGAGGCAAAAACACATCAGTTTGTGCGAGCTTTT
GAGCATTGGAAAAGTCGCACTGCAGGGTGACAGCCATCGTGGGTTGGTTT
GTTGCTGTTTCCATATTGCGTTACTCCTCGATGACACTGCTGTTCTCTCA
TGAGTCCACTTGAGCAGGGATCACTTGTTGTGACGAGTGATGAGGTCCGC
CTTCTGCCGACGATTCAGATTACAGTATAGAGACAACAGCGGATGGAGCG
TACATTAATACCGTATCCCGTTCGCTTTTTAACCAGGCATCCAACAAACT
CGCTCAGGCATGGCTTGGGAAAACGCACGCGTTTTTCTGTATCACGATGC
AATTGTTTCTTTTTCACGTACTGTGTTTTTCACTTTTTTTTTGTTCCTTC
TTCCCCACTGCCGGAAGGTGTTGGAGATCATGGAGGGTGCGGTCGGCCTG
ACCACCGCCACCGCTACTGCTACTCCTGGCGTACATCACAGCGGCAGGAG
AAACGGAAGCGCCGCTCCCGCCGGTGGAGAAAAACACGCCCTCGGTGCGG
CCCCGCTCGACGGTGAGGGGCGAAGACCAGGGGAGAGGAGTGCGTGCGGT
GGTTGTAGTGTGTGATGATGCGTCGTGTGTTTGTGTGTGTCTTTATATCG
ACCGCGCTAACCGGCTGACCAATGAAAAGACGTCAGTCTCAGTGCGGTTG
AAAACACAAAACGCTTCGTGTGTGAGTGTTTGATTGTTGGCATGCCGCGC
TGACCAATGAAGAAACGTCAGTCTCAGTGCGGTAGAACGTGCTTTGAAGG
GCCATGGTCTGGGAACCCGCAAGGGGGCGTCTTGCGTCTTGGGGGAGGCT
ACGCCACTCTCCGGACTCGAGGGCAGAAACGGTAGCAACGAGTGTTGTGG
AAGGCTCTTCAGTGGCAAATGTATGTCGATAAATCGTCGTTCCCGCGTCT
TTTTCTTTTCTTTTCTTATCTTCTTGTACCGGGCGTTCGCTCCTTTGCCT
AAAAGTCGGGGAGGGAAGAGAATTTCGTTCGTTTTCCTTTGCATGCTTTC
ATACAAACGGCTGTACTGTGTAATGGTTTGAGTTGATGCGACGTGTACCC
CCACCCCCTCCCTCGGACTCCTGTTTCTCCTCATCGGAGTGCTCCTTTAC
TTTCATCGTTTTGTCGAAAACCTGATGGCGTTTAACTATCCCGGTGATTC
TTGTTCGTTTTTCTGCATGCTGTTGTGCCCGTTTTCATGTTTTGGCAGGC
ATGGATTTTTTCCACGACCTTGACCGGAGGGATGAGCTGCTGACAGTGGC
ACACAACCACTGCATGTTCGCCTTCATCAAGGCCGGCAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6792:1103..3745+

>mRNA_Ecto-sp13_S_contig6792.17724.1 ID=mRNA_Ecto-sp13_S_contig6792.17724.1|Name=mRNA_Ecto-sp13_S_contig6792.17724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6792:1103..3745+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTATTGGACGCAGCTGCCAAAGCTGGATGGGAAAAGATAAGGTTCTC
CGCACTACGAATGGGCAAGATTGCGGCAGGAGCTGCCGTCGCCGGGCGGT
GGGAGACACACGGGCGTCCGCTCGTGCTCCGGATGGGTTTGTTAGGGGTG
TCCGAGAGGGACGTGAGCTCCTGGACTGCGGTGCTGCTGCCGTTGAGCCG
GTTGGGCTGCGCCGACGAGTGTCTCGAGGTGTTGGAGATCATGGAGGGTG
CGGTCGGCCTGACCACCGCCACCGCTACTGCTACTCCTGGCGTACATCAC
AGCGGCAGGAGAAACGGAAGCGCCGCTCCCGCCGGTGGAGAAAAACACGC
CCTCGGTGCGGCCCCGCTCGACGGTGAGGGGCGAAGACCAGGGGAGAGGA
GCATGGATTTTTTCCACGACCTTGACCGGAGGGATGAGCTGCTGACAGTG
GCACACAACCACTGCATGTTCGCCTTCATCAAGGCCGGCAGGTAA
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