mRNA_Ecto-sp13_S_contig679.17722.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig679.17722.1
Unique NamemRNA_Ecto-sp13_S_contig679.17722.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig679.17722.1 vs. uniprot
Match: D7G572_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G572_ECTSI)

HSP 1 Score: 436 bits (1120), Expect = 6.460e-153
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1 
Query:    1 KVYEANIHDMMKQMPAQRERRKKDFERVLTLFASDSLAKDRRNKVFEYFDKAVTKANCFQVKEVYSVSQDLLSVLDEARETLELLVNWCDLCLPANEQAFAEAHRIKIQHFQDYLSAGLSSVVSETADINTQLDKRAQTLRSLFSTKDVLPENQEGWYRLHREMLVHHEVNAYLSAATSWEKLLEDYLLYYNYYKMNLKDSTIVFQSEGKGGGNDYFG 654
            KVYEANIHDMMKQMPAQRERRKKDFERVLTLFASDSLAKDRRNKVFEYFDKAVTKANCFQVKEVYSVSQDLLSVLDEARETLELLVNWCDLCLPANEQAFAEAHRIKIQHFQDYLSAGLSSVVSETADINTQLDKRAQTLRSLFSTKDVLPENQEGWYRLHREMLVHHEVNAYLSAATSWEKLLEDYLLYYNYYKMNLKDSTIVFQSEGKGGGNDYFG
Sbjct:  103 KVYEANIHDMMKQMPAQRERRKKDFERVLTLFASDSLAKDRRNKVFEYFDKAVTKANCFQVKEVYSVSQDLLSVLDEARETLELLVNWCDLCLPANEQAFAEAHRIKIQHFQDYLSAGLSSVVSETADINTQLDKRAQTLRSLFSTKDVLPENQEGWYRLHREMLVHHEVNAYLSAATSWEKLLEDYLLYYNYYKMNLKDSTIVFQSEGKGGGNDYFG 320
[Close]
BLAST of mRNA_Ecto-sp13_S_contig679.17722.1 vs. uniprot
Match: A0A835YMR0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR0_9STRA)

HSP 1 Score: 278 bits (710), Expect = 1.530e-91
Identity = 131/219 (59.82%), Postives = 171/219 (78.08%), Query Frame = 1 
Query:    1 KVYEANIHDMMKQMPAQRERRKKDFERVLTLFASDSLAKDRRNKVFEYFDKAVTKANCFQVKEVYSVSQDLLSVLDEARETLELLVNWCDLCLPANEQAFAEAHRIKIQHFQDYLSAGLSSVVSETADINTQLDKRAQTLRSLFSTKDVLPENQEGWYRLHREMLVHHEVNAYLSAATSWEKLLEDYLLYYNYYKMNLKDSTIVFQSEGKGG-GNDYFG 654
            K+YE NIH+ MK  P  RE R++D+ R +TLFA    A+DRRNKVF +F+  V++ N FQ  EV+ VS+++LSVLDE+RE LEL+ NWCDLCLPANE AFAEAHR+K+Q FQDYLS G++ +V+   ++N+QL+KRAQTL+ LF+TKDVLPEN+ GW R HR++LVH E NAYL  A  WEK+LEDY+LYYNY+K N+KD  + F ++GK   G+DYFG
Sbjct:   35 KIYETNIHETMKTFPTLRECRRQDYNRCITLFALADHARDRRNKVFAFFNSHVSQPNSFQTDEVFRVSEEVLSVLDESREQLELVTNWCDLCLPANETAFAEAHRLKLQDFQDYLSGGVTGIVNSINEVNSQLEKRAQTLQLLFTTKDVLPENRTGWIRAHRDLLVHSETNAYLQVAKIWEKVLEDYVLYYNYWKTNIKDGDLAFGNQGKSERGSDYFG 253
[Close]
BLAST of mRNA_Ecto-sp13_S_contig679.17722.1 vs. uniprot
Match: A0A836C7X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7X8_9STRA)

HSP 1 Score: 265 bits (676), Expect = 1.650e-86
Identity = 126/219 (57.53%), Postives = 169/219 (77.17%), Query Frame = 1 
Query:    1 KVYEANIHDMMKQMPAQRERRKKDFERVLTLFASDSLAKDRRNKVFEYFDKAVTKANCFQVKEVYSVSQDLLSVLDEARETLELLVNWCDLCLPANEQAFAEAHRIKIQHFQDYLSAGLSSVVSETADINTQLDKRAQTLRSLFSTKDVLPENQEGWYRLHREMLVHHEVNAYLSAATSWEKLLEDYLLYYNYYKMNLKDSTIVFQSEGKGG-GNDYFG 654
            KVYE NIH+ M+++P  R+  ++D+ + +TLF++D  AKDRR KVF +FD  +T+A  +Q  +V+ +S+++LSVLDE RE LELL+NWCDLCLPANE AFAEA RIKIQ FQ+YLS G++ + + T ++N QL+KRA+TL+ LF+TKDVLPEN+ GW + HR++LVH E NAYL  A  WEK+LEDY+LY+NY+K NLKD  + F   GKG  G DYFG
Sbjct:   26 KVYERNIHETMQELPKLRDACEQDYTKCVTLFSTDDSAKDRRTKVFAFFDANITEATSYQTDQVFKLSEEVLSVLDECRELLELLMNWCDLCLPANETAFAEALRIKIQDFQEYLSGGVTGLANSTNEVNLQLEKRARTLQLLFTTKDVLPENRAGWIKAHRDLLVHCETNAYLRMAKIWEKVLEDYVLYFNYWKTNLKDGDLAFAHMGKGERGGDYFG 244
[Close]
BLAST of mRNA_Ecto-sp13_S_contig679.17722.1 vs. uniprot
Match: A0A836CFQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ5_9STRA)

HSP 1 Score: 205 bits (522), Expect = 6.050e-63
Identity = 103/217 (47.47%), Postives = 138/217 (63.59%), Query Frame = 1 
Query:    1 KVYEANIHDMMKQMPAQRERRKKDFERVLTLFASDSLAKDRRNKVFEYFDKAVTKANCFQVKEVYSVSQDLLSVLDEARETLELLVNWCDLCLPANEQAFAEAHRIKIQHFQDYLSAGLSSVVSETADINTQLDKRAQTLRSLFSTKDVLPENQEGWYRLHREMLVHHEVNAYLSAATSWEKLLEDYLLYYNYYKMNLKDSTIVFQSEGKGGGNDYF 651
            KVYE NIH  M +    R+ RK++  +V  L +    A++RR KVFE+F   +++ N FQ   VY V+ ++L  +DE RE L+ L +WCDLCLPANEQ+FAE+HR+KIQ FQ  +   +    S    +N  L +R +TLR LF+TK+V   N EGW + H E+L   E NAYL    SWE+LLE YLL YNY+ +NLK  +IVF   G+  GNDYF
Sbjct:   43 KVYEKNIHQTMTKFLDLRQSRKEEMYKVFKLISEKDHARERRQKVFEHFRDNISRVNSFQTGTVYEVTHEVLVFIDEFRELLDKLFSWCDLCLPANEQSFAESHRLKIQKFQMQIVNEMKRTNSARTQVNLHLTQRVETLRQLFTTKEVAAVNLEGWEKAHSELLTLQESNAYLVMGRSWEQLLESYLLLYNYWVLNLKHDSIVFGDAGRSSGNDYF 259
[Close]
BLAST of mRNA_Ecto-sp13_S_contig679.17722.1 vs. uniprot
Match: D8LE75_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE75_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 5.240e-58
Identity = 103/217 (47.47%), Postives = 135/217 (62.21%), Query Frame = 1 
Query:    1 KVYEANIHDMMKQMPAQRERRKKDFERVLTLFASDSLAKDRRNKVFEYFDKAVTKANCFQVKEVYSVSQDLLSVLDEARETLELLVNWCDLCLPANEQAFAEAHRIKIQHFQDYLSAGLSSVVSETADINTQLDKRAQTLRSLFSTKDVLPENQEGWYRLHREMLVHHEVNAYLSAATSWEKLLEDYLLYYNYYKMNLKDSTIVFQSEGKGGGNDYF 651
            KVYE N+HD M + P  R++RK D+ RV  L      A++RR KVFEYF+ A+++ N FQ  E+Y VS++LL ++DE RE L+ L +WCDLCLP N+QAFAE+HR KIQ FQ         +V E         KR+ + RS    ++V   N E W + H ++L   E NAYL    SWE++LE  LL YNY+K+NLKD  IVF   GK  GNDYF
Sbjct:   13 KVYEKNLHDTMAEFPELRKQRKIDYYRVFKLMDEKDNARERRRKVFEYFNGAISRQNNFQTGEIYEVSRELLMLVDEFRELLDRLFSWCDLCLPGNDQAFAESHRQKIQKFQ-------VQIVQEM--------KRSNSARS----QEVDGGNLEAWEKAHHDLLTSQEANAYLQMGRSWEQILESLLLLYNYWKVNLKDDNIVFGDAGKSTGNDYF 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig679.17722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G572_ECTSI6.460e-153100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YMR0_9STRA1.530e-9159.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C7X8_9STRA1.650e-8657.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFQ5_9STRA6.050e-6347.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LE75_ECTSI5.240e-5847.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig679contigEcto-sp13_S_contig679:18719..21806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size657
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006450.1
Cds size630
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig679.17722.1prot_Ecto-sp13_S_contig679.17722.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig679 18719..21779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463933.179132-CDS-Ecto-sp13_S_contig679:18718..188201681463933.179132-CDS-Ecto-sp13_S_contig679:18718..18820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig679 18719..18820 -
1681463933.1924882-CDS-Ecto-sp13_S_contig679:19351..194411681463933.1924882-CDS-Ecto-sp13_S_contig679:19351..19441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig679 19352..19441 -
1681463933.2059245-CDS-Ecto-sp13_S_contig679:19667..197961681463933.2059245-CDS-Ecto-sp13_S_contig679:19667..19796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig679 19668..19796 -
1681463933.2200253-CDS-Ecto-sp13_S_contig679:20113..201661681463933.2200253-CDS-Ecto-sp13_S_contig679:20113..20166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig679 20114..20166 -
1681463933.2324185-CDS-Ecto-sp13_S_contig679:20663..207171681463933.2324185-CDS-Ecto-sp13_S_contig679:20663..20717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig679 20664..20717 -
1681463933.245923-CDS-Ecto-sp13_S_contig679:21196..212931681463933.245923-CDS-Ecto-sp13_S_contig679:21196..21293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig679 21197..21293 -
1681463933.2617438-CDS-Ecto-sp13_S_contig679:21674..217791681463933.2617438-CDS-Ecto-sp13_S_contig679:21674..21779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig679 21675..21779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463933.2725616-UTR-Ecto-sp13_S_contig679:21779..218061681463933.2725616-UTR-Ecto-sp13_S_contig679:21779..21806Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig679 21780..21806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig679.17722.1

>prot_Ecto-sp13_S_contig679.17722.1 ID=prot_Ecto-sp13_S_contig679.17722.1|Name=mRNA_Ecto-sp13_S_contig679.17722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MMKQMPAQRERRKKDFERVLTLFASDSLAKDRRNKVFEYFDKAVTKANCF
QVKEVYSVSQDLLSVLDEARETLELLVNWCDLCLPANEQAFAEAHRIKIQ
HFQDYLSAGLSSVVSETADINTQLDKRAQTLRSLFSTKDVLPENQEGWYR
LHREMLVHHEVNAYLSAATSWEKLLEDYLLYYNYYKMNLKDSTIVFQSEG
KGGGNDYFG*
back to top

mRNA from alignment at Ecto-sp13_S_contig679:18719..21806-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig679.17722.1 ID=mRNA_Ecto-sp13_S_contig679.17722.1|Name=mRNA_Ecto-sp13_S_contig679.17722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3088bp|location=Sequence derived from alignment at Ecto-sp13_S_contig679:18719..21806- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGTACGAGGCCAACATTCATGACATGATGAAGCAAATGCCAGCGCA
GCGGGAGAGGCGGAAGAAAGATTTTGAGAGGGTGCTCACGCTGTTCGCCA
GTGACAGCCTTGCCAAGGACAGAAGAAACAAAGTGGGGTCGGCTAGCTCA
CGATCGTTTTGCCCCAAACACAAGCAGACTAACCCAATTTTATGGAAAAT
GGACATGCGAGTCCTGTGAGACGCCAAGTTATCACAACGTTCACGTTTTG
TATCTGACCATCCATATATACTATAGTCTTTGTCTGCAGCACTTGGAGGA
TTCGACCAAAGTGATTACCTGTCTGGAGGAAGGACCCTCCCCCCGACAGC
GGCAACGATTTAGGGTGGTTTTTCCCAAACCTGACGTGCGTCGTTCCGCG
TGCCCTGATTGCATTCGTGTGAAGCGGTACCTGTGAACCGTGTCTTTTTT
GGTTACCTTTGGCAAAACTACTCTCAGCATGGGGCGACGTAAACGCGTCC
TGTCGATCATCAGGTGTTCGAGTACTTCGACAAGGCAGTGACGAAGGCGA
ATTGTTTCCAGGTCAAGGAAGTCTACAGCGTCAGCCAGGACCTTCTGTCT
GTGCTGGACGGTAAGTCAGGATTGTTTGTGTCCGTGCAATCGAGAGAGAG
AGAGGAAGACGTGCAAGAAGAACAAGCAATGATAAGAGGAGACAGAGAGA
GACAAAGAGAGAAAGAGAGATGGTAAAAGAGAGCACACAGCGGAGGGCAC
ACACTACAGCGTCGCACTTGCTCGCAAAAACCACCTCTGGCGATACTAAG
TTGTTTGTTGAGGCAAACCATAGGAAGAACATCGCTTGGTCTTGTCTGGA
AACACTTCACCTCCATGGCCATACCGAGTAAGAGACCATGCTTTGGTGCT
GGTGGGTCCAGCACTCTTTTCACCATCGCTCATACCCTCTTGCCTTTTCG
GTGGGTGTTCAGTACCATACGCTGAAGTTGTCCTTGCACGTATGCATATT
GAATTTTGTGTTTCCAACTTTCTCGTGGCAAAGTCACACTGCTTGACCGT
GGCCTGTCTCCCGCATGTCGGTTGTACCGTACGCTGCAGAGGCGAGGGAG
ACCCTGGAGCTGCTGGTGAACTGGTGCGACTTGTGTTTACCAGGTGTGCA
TGACGTCACTGTGCCGATGCGAGTACAAGGCGTCGACGTCGGGGATGGGT
TGGTTCGTTGCTACGCTGTAACGTTGCCATCCATATATTATGTCCACCTG
TTTTAGTATCGCGCGAGTCCAAGATCAGCGGTACTCGAGCAAAAGGCGTC
ATAACTTGACAGCACCTGGTCCATCAACGTTTGGCTCAGTCAAGGGGCGA
CTAAGCGTGTCGGCTGTGCGACCGACGCCGAGCTCCTGAGAATCGGCAAA
GGTAGAAACGAACGAAATCACCTCGGGATGGCCCAAAGTGCGATAACTTT
GAGCAGATTTAACCCTCTACCTTGATTCCTCTCTTTTTTCTCTGAGAAGT
GTTGCATTTCTTGATATGATACTGTCGAAGTGCGCCAACCGAATCGGGAT
ATTGTTCGCGAAACGCAACCAAGCCTCAACCACCCTCCCCGCCTCCTCCG
CCGGTCACTGTTCCCCCCTTCTCTCGTATACCTCCACCAGCCAACGAGCA
AGCATTCGCAGAAGCACACCGCATCAAGATCCAGCACTTCCAGGTGACGA
TTCTGTCTTTATTTATCCTATAACAGTGGGGCACGTGGGTCAGACAGAGA
GCCAGGCACGTGTGCTTCATCTCGAACGTGGCTGGAACGCTCCCGTACGA
GACGCGTCCTCGGTTCCAAGAGCGACGAAACACGATGACGCTCGCCCAGT
ACAGTGGCTACGGGTGGTTGTGTCTTGGTTGCGATGCTGTGAACCTCACT
AGCAAAGACAATACCCGCGAGGACATGTAGCGTTTCCTTTGAACTCCCCC
CGCACGACATTTGCGCCGCTCACACTTCCCCGACATTGTTGTCCCGATCG
GCCTGTTCAGGATTACTTGAGCGCCGGGTTGTCCTCTGTGGTATCGGAAA
CTGCCGATATCAACACGCAGCTGGACAAGCGAGCACAGACGCTGCGGTCC
CTTTTCAGTACAAAAGACGTTCTTCCTGAGAACCAAGAGGTACGTACGAC
ACGAATTTCACGATTACTCCCGCACCCTGACAACTCCGGTTGTTATGCGG
AAGACCTCGGCACCTCTTGTCATTTCCCGCTCGCTTGGCAAGCCCGACCA
CTTTGCTCGCCGGTGTCTTGTGTTGCGTTCATTTTGGAGTCGCGCGGGTC
CTGTATCACCCATTACTGCTTCTGACACGACGTTGAACCGTTCCCGGCCC
CCTGTGATTTGACAGGGCTGGTATCGGTTGCACCGCGAGATGCTCGTTCA
CCACGAGGTTAACGCCTATTTGTCGGCCGCCACGAGCTGGGAAAAGCTGC
TGGAGGTGAGACTTGGCAATGGCTTTCATTTCTCTCTGAGGCACTTTCAA
ACCCCGCGCAGGTGCATGCATGGCAGCCCGGACGGATGCCACACGGTGCT
ACATGCGGTAGCTTAATTCTGGGCGTGAAGTGTTTGATTCGGACCACCGT
GCGTTGTGTAAGATATCACACCCCCTGGACCGATTTGCAACGCTCGATTA
CTCGTCAAGGAAAGAAGGGACAGTGCCCAAAATGGTGGAGTTGGAACTGT
CCCGCCGAACACGTATCGTTTGCCTTCGGCACCTCTTGGTCGTGGAGTAA
TCGAGATTTGAAAATCGGTCCAGGGGGTGTGATATCTTGCGCGGCCTACG
GCGCTGCTGCCACACTTGGCATCTGTCGTCCCGGCCCTGTTGCGTGGAGC
ATACACACATACCCTCCCCCGTTTCAACGTGTAGCTTACGGTGTCTGTCA
CCCCTCGGGTGCTGCCGTTGGTTGCCGACTGATGTAGTTGAATCGCCGCC
TCCATTCCCTCTGTACGGCCTTCTTCCGGATGCCAGGACTACTTGTTGTA
TTACAACTACTACAAGATGAACCTGAAGGATAGCACCATCGTCTTCCAGA
GTGAGGGAAAAGGAGGGGGTAACGACTACTTCGGCTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig679:18719..21806-

>mRNA_Ecto-sp13_S_contig679.17722.1 ID=mRNA_Ecto-sp13_S_contig679.17722.1|Name=mRNA_Ecto-sp13_S_contig679.17722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig679:18719..21806- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAAGCAAATGCCAGCGCAGCGGGAGAGGCGGAAGAAAGATTTTGA
GAGGGTGCTCACGCTGTTCGCCAGTGACAGCCTTGCCAAGGACAGAAGAA
ACAAAGTGTTCGAGTACTTCGACAAGGCAGTGACGAAGGCGAATTGTTTC
CAGGTCAAGGAAGTCTACAGCGTCAGCCAGGACCTTCTGTCTGTGCTGGA
CGAGGCGAGGGAGACCCTGGAGCTGCTGGTGAACTGGTGCGACTTGTGTT
TACCAGCCAACGAGCAAGCATTCGCAGAAGCACACCGCATCAAGATCCAG
CACTTCCAGGATTACTTGAGCGCCGGGTTGTCCTCTGTGGTATCGGAAAC
TGCCGATATCAACACGCAGCTGGACAAGCGAGCACAGACGCTGCGGTCCC
TTTTCAGTACAAAAGACGTTCTTCCTGAGAACCAAGAGGGCTGGTATCGG
TTGCACCGCGAGATGCTCGTTCACCACGAGGTTAACGCCTATTTGTCGGC
CGCCACGAGCTGGGAAAAGCTGCTGGAGGACTACTTGTTGTATTACAACT
ACTACAAGATGAACCTGAAGGATAGCACCATCGTCTTCCAGAGTGAGGGA
AAAGGAGGGGGTAACGACTACTTCGGCTAA
back to top