prot_Ecto-sp13_S_contig679.17720.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig679.17720.1
Unique Name	prot_Ecto-sp13_S_contig679.17720.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	418

Homology

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BLAST of mRNA_Ecto-sp13_S_contig679.17720.1 vs. uniprot
Match: A0A6H5KD69_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD69_9PHAE)

HSP 1 Score: 671 bits (1732), Expect = 3.010e-238
Identity = 397/429 (92.54%), Postives = 401/429 (93.47%), Query Frame = 0

Query:    1 MSLNFGDQTFGLREMDDMITQHHVGNGHQGLNGPAADGGVVAAGEPSGDEKALLNGVARAAAAEQQKHELLPPAPQAPSSWASKVRAGIGSESSPTLSGNGXXXXXXXXXXXXXX-----------DALGAILPGDLDPGVAEGIQGLPHGIGHLGPLASSLGGGAMGPVHGLDMEGGMPGRALMTPSAPARGSGVVQGLVGASLGNGGQAIGLEGGGGANGSGXXXXXXXXXXXXXXXXXXXXXXTGTGEAQKGFDASKDELLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGGEVGAITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAVIKRSAGGAAEVAPTTPAGVGEGGEQDGDPAVQGQNGTAVHQSDIALAMGSAKAPGPAAAAVRAPQQGAHLPEAAGGAAA 418
            MSLNFGDQTFGLREMDDMITQHHVGNGHQGL+GP ADGGVVAAGEP GDEKALLNGVAR AAAEQQKHELLPPAPQAPSSWASKVRAGIGSESSPTLSGNG     XXXXXXXXX           DALGAI+PGDLDPGV EGI+GLPHGIGHLGPLASSLGGGAMGPVHGLDMEGGMPGRALMTPSAPARGSGVVQGLVGASLGNGGQAIGLEGGGGANGSG    XXXXXXXXXXXXXXXXXXTGTGEAQKGFDASKDELLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAG EVGAITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAVIKRSA GAAEV+PTTPAGVG GGEQDGDPAVQGQNGTAVHQSDIALAMGSAKAPGPA AAVRAPQQGAHLPEAAGGAAA
Sbjct:    1 MSLNFGDQTFGLREMDDMITQHHVGNGHQGLDGPVADGGVVAAGEPLGDEKALLNGVARTAAAEQQKHELLPPAPQAPSSWASKVRAGIGSESSPTLSGNGGGSGGXXXXXXXXXXDGMGPSXXXXDALGAIVPGDLDPGVGEGIRGLPHGIGHLGPLASSLGGGAMGPVHGLDMEGGMPGRALMTPSAPARGSGVVQGLVGASLGNGGQAIGLEGGGGANGSGALTEXXXXXXXXXXXXXXXXXXTGTGEAQKGFDASKDELLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGEEVGAITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAVIKRSAEGAAEVSPTTPAGVGGGGEQDGDPAVQGQNGTAVHQSDIALAMGSAKAPGPATAAVRAPQQGAHLPEAAGGAAA 429

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BLAST of mRNA_Ecto-sp13_S_contig679.17720.1 vs. uniprot
Match: A0A835YKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKV5_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.600e-32
Identity = 69/107 (64.49%), Postives = 84/107 (78.50%), Query Frame = 0

Query:  244 GFDASKDELLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLE----GGAAGGE--VGAITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAVIKRSA 344
            GF+ SK+  LG FPCVRL GLAA TSV D++ FF GLGPVLDIVL+    GG  GGE  + A+ LFG +MDYHGALQRYSLQ+ GRY+EVAPA+R DYY+A+++R A
Sbjct:   37 GFENSKEYTLGLFPCVRLSGLAATTSVNDVMMFFTGLGPVLDIVLDPARSGGGDGGEQTLDAVVLFGNMMDYHGALQRYSLQLLGRYVEVAPALRGDYYAAIMQRDA 143

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BLAST of mRNA_Ecto-sp13_S_contig679.17720.1 vs. uniprot
Match: A0A836CJY6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJY6_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.230e-26
Identity = 62/112 (55.36%), Postives = 73/112 (65.18%), Query Frame = 0

Query:  252 LLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGG-------------------EVGAITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAVIKRSA 344
            +LG FPCVRL G+A DT VKD+L FF GLGPVLDIVL+   A G                    + A+ LFG LMDYHGALQRYSLQ+ GRY+ V PA+R DYY+AV +R A
Sbjct:    1 MLGVFPCVRLSGMAHDTCVKDVLAFFAGLGPVLDIVLDAEPADGGDAXXXXXXXXXXXXDVPPPLDAVVLFGNLMDYHGALQRYSLQLLGRYVAVQPALRGDYYAAVSRRRA 112

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BLAST of mRNA_Ecto-sp13_S_contig679.17720.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.300e-10
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 0

Query:  246 DASKDELLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGGEVG-AITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAVI 340
            D S +++LG FPCVRLRGL  + ++ D+L FF GL P LD+V+   A G   G AI +   LM+   AL R    +  RYIE+  + R DYYSAV+
Sbjct:   79 DYSLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVP-LDVVMVTRADGRGAGEAIVVLPNLMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVV 173

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BLAST of mRNA_Ecto-sp13_S_contig679.17720.1 vs. uniprot
Match: A0A7S4NBH0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NBH0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.090e-10
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 0

Query:  250 DELLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGGEVG---AITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAV 339
            +++LG FPCVRLRGL  + SV+D+L FF GL  VLDIV+   A     G   A  + G  MD+  ALQR    +  RYIEV    R+DYY+A+
Sbjct:  114 EQVLGVFPCVRLRGLPYNASVEDVLIFFQGL-VVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAI 205

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BLAST of mRNA_Ecto-sp13_S_contig679.17720.1 vs. uniprot
Match: A0A7R9WKK8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKK8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.010e-9
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 0

Query:  250 DELLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGGEVG---AITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAV 339
            +++LG FPCVRLRGL  + SV+D+L FF GL  VLDIV+   A     G   A  + G  MD+  ALQR    +  RYIEV    R+DYY+A+
Sbjct:   96 EQVLGVFPCVRLRGLPYNASVEDVLIFFQGL-VVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAI 187

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BLAST of mRNA_Ecto-sp13_S_contig679.17720.1 vs. uniprot
Match: A0A7S4NCM0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NCM0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.100e-9
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 0

Query:  250 DELLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGGEVG---AITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAV 339
            +++LG FPCVRLRGL  + SV+D+L FF GL  VLDIV+   A     G   A  + G  MD+  ALQR    +  RYIEV    R+DYY+A+
Sbjct:  114 EQVLGVFPCVRLRGLPYNASVEDVLIFFQGL-VVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAI 205

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BLAST of mRNA_Ecto-sp13_S_contig679.17720.1 vs. uniprot
Match: A0A7S2V6E5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E5_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.270e-9
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 0

Query:  250 DELLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLE---GGAAGGEVGAITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAV 339
            +++LG FPCVR+RGL  + +++D++ FF GL  VLD+VL     G   GE  A  +F   MD   ALQR    +  RYIEV  A R DYY A+
Sbjct:   95 EDILGPFPCVRIRGLPFEATMEDVIMFFQGL-VVLDVVLAVRGDGRGSGE--AFVVFSNPMDCQMALQRDRQNMGRRYIEVFQAKRGDYYQAI 184

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BLAST of mRNA_Ecto-sp13_S_contig679.17720.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-9
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 0

Query:  250 DELLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGGEVGAITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSA 338
            +E+LG FPCVRLRG+  + +V D+L FF GL  V  +++  G   G   A+ LF   MD + AL R    +  RYIE+  + RADYY A
Sbjct:   29 EEVLGPFPCVRLRGMPFEATVDDVLRFFQGLTVVDVVMILRGDGRGAGEALVLFANHMDLNMALSRDKQHMGRRYIEIFQSKRADYYHA 117

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig679.17720.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig679.17720.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9


Match Name	E-value	Identity	Description
A0A6H5KD69_9PHAE	3.010e-238	92.54	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A835YKV5_9STRA	1.600e-32	64.49	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A836CJY6_9STRA	2.230e-26	55.36	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
D8LML1_ECTSI	1.300e-10	45.83	Heterogeneous nuclear ribonucleoprotein, putative ...	[more]
A0A7S4NBH0_9STRA	2.090e-10	47.31	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7R9WKK8_9STRA	1.010e-9	47.31	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A7S4NCM0_9STRA	1.100e-9	47.31	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7S2V6E5_9STRA	1.270e-9	45.16	Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa...	[more]
A0A836CJZ5_9STRA	1.300e-9	43.82	RRM domain-containing protein (Fragment) n=1 Tax=T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 254..341 e-value: 1.0E-6 score: 30.5
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 193..338
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 254..336

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig679	contig	Ecto-sp13_S_contig679:6514..9680 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig679.17720.1	mRNA_Ecto-sp13_S_contig679.17720.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig679 6514..9680 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig679.17720.1 ID=prot_Ecto-sp13_S_contig679.17720.1|Name=mRNA_Ecto-sp13_S_contig679.17720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=418bp
MSLNFGDQTFGLREMDDMITQHHVGNGHQGLNGPAADGGVVAAGEPSGDE
KALLNGVARAAAAEQQKHELLPPAPQAPSSWASKVRAGIGSESSPTLSGN
GGGSGGVGGGGGGGGDALGAILPGDLDPGVAEGIQGLPHGIGHLGPLASS
LGGGAMGPVHGLDMEGGMPGRALMTPSAPARGSGVVQGLVGASLGNGGQA
IGLEGGGGANGSGALTEDFAGLEIGGGGAALGARGTGTGEAQKGFDASKD
ELLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGGEVGAI
TLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAVIKRSAGGAAEV
APTTPAGVGEGGEQDGDPAVQGQNGTAVHQSDIALAMGSAKAPGPAAAAV
RAPQQGAHLPEAAGGAAA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf