mRNA_Ecto-sp13_S_contig6788.17717.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6788.17717.1
Unique NamemRNA_Ecto-sp13_S_contig6788.17717.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6788.17717.1 vs. uniprot
Match: D7FWR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR5_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 5.320e-67
Identity = 116/128 (90.62%), Postives = 118/128 (92.19%), Query Frame = 3 
Query:    3 IREAQGAPAGQRGSGGGGG-FVPEAEMSAVEARTSQLKAFMINADTSRSVLDVSKLWISRRMLVAEATLLRAYGGVGPTARAQDAIRQGRRVRLRRIFRAFETAWRENLMSRPPEETLETIESSDCIG 383
            IREAQG PAGQRG       FVPEAE+SAVEARTSQL+AFMINADTSRSVLDVSKLWISRRMLVAE TLLRAYGGVGPTARAQDAIRQGRRVRLRRIFRAFETAWRENLMSRPPEETLE IESSDCIG
Sbjct:  147 IREAQGTPAGQRGXXXXXXXFVPEAEISAVEARTSQLRAFMINADTSRSVLDVSKLWISRRMLVAETTLLRAYGGVGPTARAQDAIRQGRRVRLRRIFRAFETAWRENLMSRPPEETLERIESSDCIG 274
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6788.17717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWR5_ECTSI5.320e-6790.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6788contigEcto-sp13_S_contig6788:351..1966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size631
Hectar predicted targeting categoryother localisation
Exons3
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.7377365-UTR-Ecto-sp13_S_contig6788:350..4271681463932.7377365-UTR-Ecto-sp13_S_contig6788:350..427Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6788 351..427 +
1681463932.785144-UTR-Ecto-sp13_S_contig6788:1721..19661681463932.785144-UTR-Ecto-sp13_S_contig6788:1721..1966Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6788 1722..1966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.750197-CDS-Ecto-sp13_S_contig6788:427..4921681463932.750197-CDS-Ecto-sp13_S_contig6788:427..492Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6788 428..492 +
1681463932.7591522-CDS-Ecto-sp13_S_contig6788:939..10801681463932.7591522-CDS-Ecto-sp13_S_contig6788:939..1080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6788 940..1080 +
1681463932.7684546-CDS-Ecto-sp13_S_contig6788:1618..17211681463932.7684546-CDS-Ecto-sp13_S_contig6788:1618..1721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6788 1619..1721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6788.17717.1prot_Ecto-sp13_S_contig6788.17717.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6788 428..1721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6788.17717.1

>prot_Ecto-sp13_S_contig6788.17717.1 ID=prot_Ecto-sp13_S_contig6788.17717.1|Name=mRNA_Ecto-sp13_S_contig6788.17717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MSAVEARTSQLKAFMINADTSRSVLDVSKLWISRRMLVAEATLLRAYGGV
GPTARAQDAIRQGRRVRLRRIFRAFETAWRENLMSRPPEETLETIESSDC
IG*
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mRNA from alignment at Ecto-sp13_S_contig6788:351..1966+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6788.17717.1 ID=mRNA_Ecto-sp13_S_contig6788.17717.1|Name=mRNA_Ecto-sp13_S_contig6788.17717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1616bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6788:351..1966+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTATTAGAGAGGCTCAGGGCGCACCTGCAGGCCAGAGAGGCAGCGGCGGC
GGCGGCGGTTTCGTCCCAGAGGCCGAGATGTCGGCAGTGGAGGCGAGGAC
AAGTCAGCTCAAGGCTTTCATGATCAATGCCGATACATCGCGGTGAGAAA
TTAGAAACCGATTGCGAGCAAGCGGAACAAAGTCGAACGGCAGCAACGGG
GGAAGGTGTACAGCATGAAAAGTATATGGGAGGCAGAGGTACGGCGCATC
CAGGTTTGTTTAAGCTTCGGCGTTTGAGCTAGAAGGCAATGCATCTCACT
CCAAACCAAGACAGATTCGTCACCTGATGTTCAGAACGAAACTGCTGTGT
CTGGATCCCCGTCGTCTTGCGTTTTACTCCGTAGATGCGGCTGTGCCTGG
GTGGTAGGTGTCACCCGATTTTTCACCTCTTCCATTTGTCACCCCTTCCT
ACCCAGACGTATCCTCCTACACATTGTACCACATGCACTGCATGTACGGC
AAACGAAGCTTGAGGGCAAACATAGCCATCCCTTAGGTGGACGTAAAACG
AGCAGTCGTTCGTGTTGCCGACCAAACTCCCTCGCCCAGGAGCGTGCTCG
ACGTGTCCAAGCTATGGATTAGCCGCAGGATGCTGGTCGCAGAGGCCACT
CTTCTGAGGGCCTACGGAGGAGTGGGGCCAACGGCGAGGGCCCAGGACGC
GATAAGGCAGGGACGACGAGTGCGGCTGAGGTGAGATAGAACGCGGAAGG
GATGCACCACCGTACTCAATGGCGAATGTGAGACAGACCCCCACCCCTGA
TGAACTCAAGCCCAAGGAAACGGTGGTATTCTACAGTAGTGTTGTGGTGA
AGGACCCGGAAGATATGGTGAAGGACCCGGAAACATGACCAACAAGCTCC
CCTTGAAAAAATCTGGCAGAATCTTGAAGGCGGGCCAAACGAACTTTACA
CGGGAACGGATCCTGCCGCTTGAAATCATGGATACTTCGACTTCCTTGTA
TGTGTGCTACGCGTGGCGGACCAATCGGACTGGGAAGCAACCAAATTCGA
TGTTTCTGATACAATCGGGCGAACGTGAAAAACGTGATGAGGCACACCAA
AACTCGACAAAATATCTTGGCTTTCACATGCATGCTCCCAAGTCATGCAA
CGTTTAAGCACTTGGAGACAGATGATATCTTTTCATCGGTCAGAAGGATA
CATTGACGCACGCTCGCTGCTGCTTAAGTCGTTGCTGTGTGCTGTCGATG
CTTGTCATTGTCGGTCAGGCGGATTTTCCGGGCGTTCGAGACGGCGTGGC
GAGAGAATCTCATGTCGCGGCCTCCTGAGGAAACCCTCGAGACGATCGAA
TCGAGCGACTGCATAGGATAGAGCATTGGTGAAGGGGGTGCAAATGTGAA
AGAATACCCCAAACTGCCAAATGTTGTGTGTACCCTGTTTTCAACCTTGG
CCAGTCAGGTTCACGTGGTACCGCTGTAACAGTAGCCATCTATACAATGA
GTAAAATGAGGTAAATCTTCGAGCAAGGTCATGGACCGATCAGGAGCTGG
ATCAGGAGCTTAATGCAAGATAATCGATAGAGATAGATAGCCCTCGCCGG
AAGAGAAGCAGGTGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6788:351..1966+

>mRNA_Ecto-sp13_S_contig6788.17717.1 ID=mRNA_Ecto-sp13_S_contig6788.17717.1|Name=mRNA_Ecto-sp13_S_contig6788.17717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6788:351..1966+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGCAGTGGAGGCGAGGACAAGTCAGCTCAAGGCTTTCATGATCAA
TGCCGATACATCGCGGAGCGTGCTCGACGTGTCCAAGCTATGGATTAGCC
GCAGGATGCTGGTCGCAGAGGCCACTCTTCTGAGGGCCTACGGAGGAGTG
GGGCCAACGGCGAGGGCCCAGGACGCGATAAGGCAGGGACGACGAGTGCG
GCTGAGGCGGATTTTCCGGGCGTTCGAGACGGCGTGGCGAGAGAATCTCA
TGTCGCGGCCTCCTGAGGAAACCCTCGAGACGATCGAATCGAGCGACTGC
ATAGGATAG
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