mRNA_Ecto-sp13_S_contig67871.17716.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67871.17716.1
Unique NamemRNA_Ecto-sp13_S_contig67871.17716.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67871.17716.1 vs. uniprot
Match: D7FX60_ECTSI (WD40 repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.940e-27
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM 150
            GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM
Sbjct:  214 GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM 263
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BLAST of mRNA_Ecto-sp13_S_contig67871.17716.1 vs. uniprot
Match: A0A7S3Y2P2_HETAK (WD40 repeat-containing protein SMU1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2P2_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 8.160e-21
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM 150
            G KSHPEVARF+PDG+ L +GSVDGFVEVWD D CRLRKDL YQA+DEFM
Sbjct:   37 GAKSHPEVARFAPDGRALVTGSVDGFVEVWDPDGCRLRKDLEYQARDEFM 86
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BLAST of mRNA_Ecto-sp13_S_contig67871.17716.1 vs. uniprot
Match: A0A7R8XD53_9CRUS (WD40 repeat-containing protein SMU1 n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8XD53_9CRUS)

HSP 1 Score: 90.1 bits (222), Expect = 7.890e-20
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM 150
            GTKSHPEVARFSPDGQYL +GSVDGF+EVW+F T ++RKDL YQA+D FM
Sbjct:  283 GTKSHPEVARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM 332
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BLAST of mRNA_Ecto-sp13_S_contig67871.17716.1 vs. uniprot
Match: A0A8K0K9C4_LADFU (Uncharacterized protein (Fragment) n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0K9C4_LADFU)

HSP 1 Score: 87.0 bits (214), Expect = 9.620e-20
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM 150
            G KSH E ARFSPDGQYL +GSVDGFVEVW+F T ++RKDL YQAKDEFM
Sbjct:   16 GAKSHVECARFSPDGQYLVTGSVDGFVEVWNFTTGKIRKDLKYQAKDEFM 65
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BLAST of mRNA_Ecto-sp13_S_contig67871.17716.1 vs. uniprot
Match: UPI000C6DAE8E (WD40 repeat-containing protein SMU1-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DAE8E)

HSP 1 Score: 82.8 bits (203), Expect = 6.440e-19
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM 150
            G KSH E ARFSPDGQYL +GSVDGF+EVW+F T ++RKDL YQA+D FM
Sbjct:   48 GQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM 97
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BLAST of mRNA_Ecto-sp13_S_contig67871.17716.1 vs. uniprot
Match: UPI0006D73149 (WD40 repeat-containing protein SMU1-like n=1 Tax=Myotis lucifugus TaxID=59463 RepID=UPI0006D73149)

HSP 1 Score: 82.8 bits (203), Expect = 1.910e-18
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM 150
            G KSH E ARFSPDGQYL +GSVDGF+EVW+F T ++RKDL YQA+D FM
Sbjct:    2 GQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM 51
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BLAST of mRNA_Ecto-sp13_S_contig67871.17716.1 vs. uniprot
Match: G1QBV3_MYOLU (WD40 repeat-containing protein SMU1 n=3 Tax=Boreoeutheria TaxID=1437010 RepID=G1QBV3_MYOLU)

HSP 1 Score: 84.7 bits (208), Expect = 2.550e-18
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM 150
            G KSH E ARFSPDGQYL +GSVDGF+EVWDF T ++RKDL YQA+D FM
Sbjct:   24 GQKSHVECARFSPDGQYLVTGSVDGFIEVWDFTTGKIRKDLKYQAQDNFM 73
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BLAST of mRNA_Ecto-sp13_S_contig67871.17716.1 vs. uniprot
Match: UPI0009E248D2 (WD40 repeat-containing protein SMU1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E248D2)

HSP 1 Score: 84.3 bits (207), Expect = 3.120e-18
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM 150
            G+KSHPE  +FSPDGQYL +GSVDGF+EVW+F T ++RKDL YQA+D FM
Sbjct:   11 GSKSHPECVKFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM 60
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BLAST of mRNA_Ecto-sp13_S_contig67871.17716.1 vs. uniprot
Match: A0A183BLH0_GLOPA (WD40 repeat-containing protein SMU1 n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183BLH0_GLOPA)

HSP 1 Score: 85.5 bits (210), Expect = 3.360e-18
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM 150
            G KSHPE A+FSPDGQYL +GSVDGF+EVW+F T +LRKDL YQA+D FM
Sbjct:  213 GAKSHPESAQFSPDGQYLVTGSVDGFIEVWNFTTGKLRKDLKYQAQDNFM 262
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BLAST of mRNA_Ecto-sp13_S_contig67871.17716.1 vs. uniprot
Match: A0A7M7G2J5_NASVI (WD repeat-containing protein 55 homolog n=39 Tax=Apocrita TaxID=7400 RepID=A0A7M7G2J5_NASVI)

HSP 1 Score: 85.1 bits (209), Expect = 4.420e-18
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM 150
            GTKSH E ARFSPDGQYL +GSVDGF+EVW+F T ++RKDL YQA+D FM
Sbjct:  212 GTKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM 261
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67871.17716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX60_ECTSI4.940e-27100.00WD40 repeat-containing protein SMU1 n=2 Tax=Ectoca... [more]
A0A7S3Y2P2_HETAK8.160e-2180.00WD40 repeat-containing protein SMU1 (Fragment) n=1... [more]
A0A7R8XD53_9CRUS7.890e-2078.00WD40 repeat-containing protein SMU1 n=1 Tax=Darwin... [more]
A0A8K0K9C4_LADFU9.620e-2078.00Uncharacterized protein (Fragment) n=1 Tax=Ladona ... [more]
UPI000C6DAE8E6.440e-1972.00WD40 repeat-containing protein SMU1-like n=1 Tax=C... [more]
UPI0006D731491.910e-1872.00WD40 repeat-containing protein SMU1-like n=1 Tax=M... [more]
G1QBV3_MYOLU2.550e-1874.00WD40 repeat-containing protein SMU1 n=3 Tax=Boreoe... [more]
UPI0009E248D23.120e-1870.00WD40 repeat-containing protein SMU1-like n=1 Tax=O... [more]
A0A183BLH0_GLOPA3.360e-1874.00WD40 repeat-containing protein SMU1 n=1 Tax=Globod... [more]
A0A7M7G2J5_NASVI4.420e-1874.00WD repeat-containing protein 55 homolog n=39 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67871contigEcto-sp13_S_contig67871:3..671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score109.8
Seed ortholog evalue3.8e-22
Seed eggNOG ortholog2880.D7FX60
Preferred nameSMU1
Model size150
KEGG koko:K13111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007517,GO:0007528,GO:0007610,GO:0007638,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0023052,GO:0030154,GO:0030182,GO:0031323,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046983,GO:0048024,GO:0048468,GO:0048513,GO:0048644,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0061061,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071840,GO:0072553,GO:0080008,GO:0080090,GO:0090304,GO:0098916,GO:0099172,GO:0099536,GO:0099537,GO:1901360,GO:1902494,GO:1903311,GO:1990234,GO:1990904
Exons2
EggNOG free text desc.regulation of alternative mRNA splicing, via spliceosome
EggNOG OGsKOG0275@1,KOG0275@2759
Cds size150
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.6922-CDS-Ecto-sp13_S_contig67871:2..681681463932.6922-CDS-Ecto-sp13_S_contig67871:2..68Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67871 3..68 -
1681463932.7076488-CDS-Ecto-sp13_S_contig67871:587..6711681463932.7076488-CDS-Ecto-sp13_S_contig67871:587..671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67871 588..671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67871.17716.1prot_Ecto-sp13_S_contig67871.17716.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67871 3..671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67871.17716.1

>prot_Ecto-sp13_S_contig67871.17716.1 ID=prot_Ecto-sp13_S_contig67871.17716.1|Name=mRNA_Ecto-sp13_S_contig67871.17716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
GTKSHPEVARFSPDGQYLASGSVDGFVEVWDFDTCRLRKDLAYQAKDEFM
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mRNA from alignment at Ecto-sp13_S_contig67871:3..671-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67871.17716.1 ID=mRNA_Ecto-sp13_S_contig67871.17716.1|Name=mRNA_Ecto-sp13_S_contig67871.17716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67871:3..671- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCACGAAGAGTCACCCCGAGGTGGCTCGGTTTAGCCCGGACGGGCAGTA
CCTGGCTTCCGGCAGCGTTGACGGCTTCGTTGAGGTGACGTTGCGCTCCT
GAAATCTTGATTCCTGTTTGCCGTTCGTGGGTAGACCATGGCCTGTTTTA
TGATCGAATGTTGGCCAGACGTCCTGCCATCCCCCGAGTTTGTCGTTTGT
TTCCGCGACCAGGTACTTTTTTTACCTCGATGGGGTGTGCGTCAATGTGA
CAGCCTATCACGACGGAATGTGTGAGATGGGAAACGTTGATGCTTCCAGC
TTGCGCGAGCAGCGGGGGGTTGGCGTTGCCCCGGACGCAACTCGGGTATT
TCTGTGCTGCTGCTGAACCGGAACTTGAAAAAAGCGAAACGGAAGGACTC
AAAGCGCAACCAACAAACCATTCAACAAACACCACACATATGTTCCAAAC
CGCAACAGCTTGAGAGGACAAGGCAAGACGACCAAAAACTGGCACCACAC
ACAAGTTAGGCGCTACAGAACGTCCACGCCAAGAACACAACCACAAACTG
AAACAGAAACAAGAGGAGAGAAATGAAACAACACGCCCGACGGCCGACCA
CAGGTGTGGGATTTCGACACGTGCAGGCTGCGCAAGGACCTGGCGTACCA
GGCCAAGGACGAGTTTATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67871:3..671-

>mRNA_Ecto-sp13_S_contig67871.17716.1 ID=mRNA_Ecto-sp13_S_contig67871.17716.1|Name=mRNA_Ecto-sp13_S_contig67871.17716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67871:3..671- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCACGAAGAGTCACCCCGAGGTGGCTCGGTTTAGCCCGGACGGGCAGTA
CCTGGCTTCCGGCAGCGTTGACGGCTTCGTTGAGGTGTGGGATTTCGACA
CGTGCAGGCTGCGCAAGGACCTGGCGTACCAGGCCAAGGACGAGTTTATG
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