mRNA_Ecto-sp13_S_contig6786.17715.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6786.17715.1
Unique NamemRNA_Ecto-sp13_S_contig6786.17715.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6786.17715.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 3.740e-86
Identity = 145/152 (95.39%), Postives = 147/152 (96.71%), Query Frame = 1 
Query:    1 GLPEGAAMRLFFKYHGVYHRVPDTAECFPWEAGSTSVLEAGFDDIIGEAGSVHVSRTGDETATSAYGYTYGIDFAGTAVRGDMDLRLLIAQETLDGEDYASDVSAVVFDGLGESSNIEVTLNDDLDNAGFADAIIGLTYTGLDVNSSHTYSY 456
            GLPEGAAMRLFFKYHGVYHRVPDTAECFPWEAGSTSVLEAGFDDIIGEAGSV VSR GDETATSAYGYTYGIDFAGTAVRGDMDLRLLIAQETLDGE  AS VSAV+FDGLGESS+IEVTLNDDLDNAGFADAIIGLTYTGLDVNSSHTYSY
Sbjct: 14861 GLPEGAAMRLFFKYHGVYHRVPDTAECFPWEAGSTSVLEAGFDDIIGEAGSVLVSRIGDETATSAYGYTYGIDFAGTAVRGDMDLRLLIAQETLDGE--ASGVSAVIFDGLGESSSIEVTLNDDLDNAGFADAIIGLTYTGLDVNSSHTYSY 15010
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BLAST of mRNA_Ecto-sp13_S_contig6786.17715.1 vs. uniprot
Match: A0A6H5JYH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH1_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 4.840e-81
Identity = 139/152 (91.45%), Postives = 142/152 (93.42%), Query Frame = 1 
Query:    1 GLPEGAAMRLFFKYHGVYHRVPDTAECFPWEAGSTSVLEAGFDDIIGEAGSVHVSRTGDETATSAYGYTYGIDFAGTAVRGDMDLRLLIAQETLDGEDYASDVSAVVFDGLGESSNIEVTLNDDLDNAGFADAIIGLTYTGLDVNSSHTYSY 456
            GLPEGAAMRLFFK       VPDTAECFPWEAGSTSVLEAGFDDIIGEAGSVHVSRTGDETATSAYGYTYGIDFAGTAVRGDMDLRLLIAQETLDGEDYAS VSAV+FDGLGESS+IEVTLND LD+AGFADAIIGLTYTG DVNSSHTYSY
Sbjct: 7378 GLPEGAAMRLFFK-------VPDTAECFPWEAGSTSVLEAGFDDIIGEAGSVHVSRTGDETATSAYGYTYGIDFAGTAVRGDMDLRLLIAQETLDGEDYASGVSAVIFDGLGESSSIEVTLNDGLDDAGFADAIIGLTYTGSDVNSSHTYSY 7522
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6786.17715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNA6_ECTSI3.740e-8695.39Similar to titin isoform N2-B n=1 Tax=Ectocarpus s... [more]
A0A6H5JYH1_9PHAE4.840e-8191.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6786contigEcto-sp13_S_contig6786:5971..7590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score272.3
Seed ortholog evalue1.3e-70
Seed eggNOG ortholog2880.D7FNA6
Model size456
KEGG koko:K12567
KEGG Pathwayko05410,ko05414,map05410,map05414
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
EC2.7.11.1
Cds size435
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.5855505-CDS-Ecto-sp13_S_contig6786:5970..60131681463932.5855505-CDS-Ecto-sp13_S_contig6786:5970..6013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6786 5971..6013 -
1681463932.598462-CDS-Ecto-sp13_S_contig6786:6445..66011681463932.598462-CDS-Ecto-sp13_S_contig6786:6445..6601Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6786 6446..6601 -
1681463932.6162615-CDS-Ecto-sp13_S_contig6786:6988..71861681463932.6162615-CDS-Ecto-sp13_S_contig6786:6988..7186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6786 6989..7186 -
1681463932.6289854-CDS-Ecto-sp13_S_contig6786:7531..75691681463932.6289854-CDS-Ecto-sp13_S_contig6786:7531..7569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6786 7532..7569 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.6416173-UTR-Ecto-sp13_S_contig6786:7569..75901681463932.6416173-UTR-Ecto-sp13_S_contig6786:7569..7590Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6786 7570..7590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6786.17715.1prot_Ecto-sp13_S_contig6786.17715.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6786 5971..7569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6786.17715.1

>prot_Ecto-sp13_S_contig6786.17715.1 ID=prot_Ecto-sp13_S_contig6786.17715.1|Name=mRNA_Ecto-sp13_S_contig6786.17715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MRLFFKYHGVYHRVPDTAECFPWEAGSTSVLEAGFDDIIGEAGSVHVSRT
GDETATSAYGYTYGIDFAGTAVRGDMDLRLLIAQETLDGEDYASDVSAVV
FDGLGESSNIEVTLNDDLDNAGFADAIIGLTYTGLDVNSSHTYSY
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mRNA from alignment at Ecto-sp13_S_contig6786:5971..7590-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6786.17715.1 ID=mRNA_Ecto-sp13_S_contig6786.17715.1|Name=mRNA_Ecto-sp13_S_contig6786.17715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1620bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6786:5971..7590- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCTACCCGAAGGGGCCGCGATGCGACTGTTCTTCAAGTACCACGGGGT
ATATCACAGGTAGGCGGTCGATTTGGAACTGCCGCAGTACGCCGCCGTGC
AAGGTACTCATTCGTACAGCGCGATAATTCAGGCTTACGGGAGAGTCGAT
GTCACCGGTTCGAGTAAAGTACAGATCAAACAATATCGTGCAGTAGTACC
AAACCGGTACGTTCTACGACAGCATTGGCTACTTCCGTTCTAAAAAGAAG
AGTATTGTAGGGTGAACGTCAAAAGTAGGGTTCTCAAAATGTCAAGCTGC
GTGCGTAACTACTGCATGTGAGAGTGCATTGCCCCCAACATCCATCTCCC
CTGCACGGAACCGACGTTCGTATGACATTGTAACGACAACATTAATGAAC
ACAGGGTTCCTGACACGGCCGAGTGCTTCCCGTGGGAGGCTGGCAGCACA
TCGGTACTAGAAGCGGGCTTTGACGACATCATCGGCGAGGCGGGGTCGGT
TCATGTCAGCAGGACCGGGGATGAAACTGCCACCTCGGCGTACGGCTATA
CCTACGGAATCGACTTTGCCGGCACCGCAGTGAGGGGCGACATGGATCTG
AGGTACCTTGTGTATTTTTTTTTTGTCGAGATATGTCGAGGCATCCCCGT
ACATGCACCGCGGTACTGTAGTGTATTTCGGTTTGCGTGGAGGCTGGAAT
GCTCTTATATTGAATTCGTTCCACGCCCCCCCCCCCTCAACACACACGTC
GCTTGCCGAGTTACCTACTGCCTCAAACAATTTTTTTGAACCCCGTCTTA
CGCTTTTGAAGTCTCCTTCCTTTTTCTTGCAACCCCTGACACATGGGGCC
TGGTCCGACCAGTTCAAGTGTTGTCAATCTGGAAAGTTGACTGTTGTGCG
ATCTCGAGCACTTTCGTTATGCATTGTTCTACGCGAATTCATTATATGCC
CGTCTTGCCGCATCCCACACGCCCAACTCGCCATTCCAGATTGCTGATCG
CGCAAGAAACACTGGATGGTGAAGATTACGCTTCGGATGTAAGCGCGGTG
GTTTTCGATGGTCTCGGGGAGTCGTCGAACATTGAAGTGACACTTAACGA
CGACCTGGACAACGCGGGATTCGCCGACGCCATCATCGGATTAACGTAAG
AAACGGGTGCCGGGAGTTAATCACAGTGTGCGTAATTGGTTGAAGGCAGC
GTCCTCCAGGAGGTAAAGCAGGTGGGACGCAAACCTCGATACGTCGGAAA
AAAGCTGTCCACCAAATGGATCACGTGTAACACTACGCCAGAGATGCTTT
TCAGCTCGGAAATGACCTCTTTGTATGTGTGGGGCTCACCTATAGGCCAG
TGCTTCGGAACCCTTTGGAAGCGAAGCCTCCAGCGGTGGGTTTTCCGATG
AGACGGCTTCGAACGTCCCCCCGCCCCTTCTCCACCCCGTTGCCGTTGTA
GTCTCGCCGACGAAAGAATTCCCGAAGCTTTAAGGATGGTGTCGCACAAC
TTCAAGCTAAACTAGCCCGAGGTACACCATCCTTTTTAACGTCTGGCCCT
ATTCCTCCCTTTCCTGTATCCGTACAGCTACACTGGATTGGACGTGAACT
CCTCCCACACGTACAGCTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6786:5971..7590-

>mRNA_Ecto-sp13_S_contig6786.17715.1 ID=mRNA_Ecto-sp13_S_contig6786.17715.1|Name=mRNA_Ecto-sp13_S_contig6786.17715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6786:5971..7590- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACTGTTCTTCAAGTACCACGGGGTATATCACAGGGTTCCTGACAC
GGCCGAGTGCTTCCCGTGGGAGGCTGGCAGCACATCGGTACTAGAAGCGG
GCTTTGACGACATCATCGGCGAGGCGGGGTCGGTTCATGTCAGCAGGACC
GGGGATGAAACTGCCACCTCGGCGTACGGCTATACCTACGGAATCGACTT
TGCCGGCACCGCAGTGAGGGGCGACATGGATCTGAGATTGCTGATCGCGC
AAGAAACACTGGATGGTGAAGATTACGCTTCGGATGTAAGCGCGGTGGTT
TTCGATGGTCTCGGGGAGTCGTCGAACATTGAAGTGACACTTAACGACGA
CCTGGACAACGCGGGATTCGCCGACGCCATCATCGGATTAACCTACACTG
GATTGGACGTGAACTCCTCCCACACGTACAGCTAC
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