mRNA_Ecto-sp13_S_contig6784.17712.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6784.17712.1
Unique NamemRNA_Ecto-sp13_S_contig6784.17712.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6784.17712.1 vs. uniprot
Match: D7FQN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN2_ECTSI)

HSP 1 Score: 604 bits (1557), Expect = 1.920e-210
Identity = 295/378 (78.04%), Postives = 325/378 (85.98%), Query Frame = 2 
Query:   83 LPIKMASSN---AAVTNQPPANGGASGLVAPGAVEEPRAGVSTTMVGWGPGELGRGCCWTIATCPYRATQATRLSSITEQQKDFAHFCNVSYNDPGDRPTELRGYELLQDDMPLRDGVDESGATTEPLNGQRWMVYRHPNRVNHVLVFRGTVDKLDMEYDAHLLTKGLADHKLVMDSAAFSLRAMIFLEKQAKDEGDARAGGAGSLDTTCLKFWVAGHSLGGSTAMGVMLLLNDPIDMVATLEDSAKSNKTRRQFLETYKEKIADVYTAAAAESGTSRPYDLVGGDIFNPGSAPRCLLFSNPWVCLFGCLSTPAWIISRCGMFWYRLCTY-RHHGPGADQLVNNHHILGDTISMTFRMGKEKSYWPNHWKVHAIAQFL 1204
            L IKMASS    AAVT QPPA+ G+SGLV P  +EEP  GVS TMV WGPGE+G  CCWTI +CPYRATQA+RLSSITEQQ+DFAHFCNVSY++P DRPTELRGYELLQ DMPLRDG DESGATTEPLN QRWMVYRHPNRVNH LVFRGTVDKLD+EYDAHLLTKGLADHKL+MDSAAF+LRAM+FLEKQAK+E  A AGGA SLDTTCLKFWV GHSLGGSTAMGVMLLLNDP+ M ATLE +AK++K+R+QFLE Y+EKI D      AE  ++RPY+LVGGDIFNPGS PRC+L SNP VCLFG LS PA+IISRCG+F YR C   R HGP AD LVNNHH+LGDTISMTFRMGKE+SYWPNHWK+HAIAQFL
Sbjct:   47 LSIKMASSETTAAAVTEQPPADDGSSGLVGPMGMEEPTVGVSNTMVSWGPGEMGMSCCWTIFSCPYRATQASRLSSITEQQRDFAHFCNVSYSNPDDRPTELRGYELLQGDMPLRDGADESGATTEPLNAQRWMVYRHPNRVNHALVFRGTVDKLDIEYDAHLLTKGLADHKLMMDSAAFALRAMVFLEKQAKEERHAGAGGADSLDTTCLKFWVTGHSLGGSTAMGVMLLLNDPVAMAATLEANAKTHKSRQQFLEMYREKIVDXXXXXVAEIYSNRPYELVGGDIFNPGSPPRCILLSNPCVCLFGLLSLPAYIISRCGLFCYRCCKQSRQHGPRADLLVNNHHVLGDTISMTFRMGKEQSYWPNHWKMHAIAQFL 424
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BLAST of mRNA_Ecto-sp13_S_contig6784.17712.1 vs. uniprot
Match: A0A6H5KWJ9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWJ9_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 3.620e-41
Identity = 126/367 (34.33%), Postives = 181/367 (49.32%), Query Frame = 2 
Query:  221 PGELGRGCCWTIATCPYRATQATRLSSITEQQKDFAHFCNVSYNDPGD---------RPTELRG----YELLQDDMPLRDGVDESGATTEPLNGQRWMVYRHPNRVNHVLVFRGTVDKLDMEYDAHLLTKGLADHKLVMDSAAFSLRAMIFLEKQAKDEGDARAGGAGSLDTTCLKFWVAGHSLGGSTAMGVMLLLNDPIDMVATLEDSAKSNKTRRQFLETYKEKIADVYTAAAAE-SGTSRPYDLVGGDIFNPGSAPRCL-------LFSNPWV----CLFGCLSTPAWIISRCG------MFWYRLCTYRHHGPGADQLVNNHHILGDTISMTFRMGKEKSYWPNHWKVHAIAQFL*RVDSPGK 1228
            PGE+GRG   T+ T P R  + + L  +T+++K FA   +  Y  PG+            E RG    Y LL+ ++P   G D   A+   LN  RW V+R PN+V++VL FRGT D+ D   D  L+      HK ++++  ++LR ++FL KQ  D G              L+F V GHSLGG+ AMGVM+LL+D I   A      + N TR      Y++++   + A  A  SG + PY+LVGG IFNPG+ P  +         +  W+     + G  +T A      G      ++ YR  T R   P  D+ V  HHI+GD +S  FR+G EK+Y P   +   +A       SPGK
Sbjct:   12 PGEMGRGLIETVLTLPRRLVRTSHLEDMTDEEKAFACLSSEVYKKPGNDDXXXXXNPASDEHRGARCGYTLLRGEIPAAAGDDGPAAS---LNDTRWAVFRAPNQVDYVLAFRGTADRRDALNDVLLVHGDFDQHKYMLNATVWALRVILFLSKQ-HDNGXXXX--XXXXXXXGLRFSVTGHSLGGTVAMGVMVLLHD-IPTTAR----RRPNDTR------YQQQVLGAWNAERANWSGAAAPYELVGGHIFNPGAWPGLVGPVAGGSAVAGFWLTGGFAVAGAAATAAMCAVTVGSGCVLAIYLYRSHTERLSDP-VDKRVTTHHIIGDVVSGFFRLGTEKNYMPKDKRARRLAT----ACSPGK 356
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6784.17712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQN2_ECTSI1.920e-21078.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWJ9_9PHAE3.620e-4134.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6784contigEcto-sp13_S_contig6784:4020..7066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1990
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-16_000960.1
Cds size1206
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.3864172-UTR-Ecto-sp13_S_contig6784:4019..40201681463932.3864172-UTR-Ecto-sp13_S_contig6784:4019..4020Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6784 4020..4020 +
1681463932.4305072-UTR-Ecto-sp13_S_contig6784:6283..70661681463932.4305072-UTR-Ecto-sp13_S_contig6784:6283..7066Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6784 6284..7066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.3962328-CDS-Ecto-sp13_S_contig6784:4020..47641681463932.3962328-CDS-Ecto-sp13_S_contig6784:4020..4764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6784 4021..4764 +
1681463932.4056547-CDS-Ecto-sp13_S_contig6784:5689..60371681463932.4056547-CDS-Ecto-sp13_S_contig6784:5689..6037Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6784 5690..6037 +
1681463932.4155674-CDS-Ecto-sp13_S_contig6784:6169..62831681463932.4155674-CDS-Ecto-sp13_S_contig6784:6169..6283Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6784 6170..6283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6784.17712.1prot_Ecto-sp13_S_contig6784.17712.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6784 4021..6283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6784.17712.1

>prot_Ecto-sp13_S_contig6784.17712.1 ID=prot_Ecto-sp13_S_contig6784.17712.1|Name=mRNA_Ecto-sp13_S_contig6784.17712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=402bp
MLVHACLATPLRSLLRSLAAHRTPQSHLPIKMASSNAAVTNQPPANGGAS
GLVAPGAVEEPRAGVSTTMVGWGPGELGRGCCWTIATCPYRATQATRLSS
ITEQQKDFAHFCNVSYNDPGDRPTELRGYELLQDDMPLRDGVDESGATTE
PLNGQRWMVYRHPNRVNHVLVFRGTVDKLDMEYDAHLLTKGLADHKLVMD
SAAFSLRAMIFLEKQAKDEGDARAGGAGSLDTTCLKFWVAGHSLGGSTAM
GVMLLLNDPIDMVATLEDSAKSNKTRRQFLETYKEKIADVYTAAAAESGT
SRPYDLVGGDIFNPGSAPRCLLFSNPWVCLFGCLSTPAWIISRCGMFWYR
LCTYRHHGPGADQLVNNHHILGDTISMTFRMGKEKSYWPNHWKVHAIAQF
L*
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mRNA from alignment at Ecto-sp13_S_contig6784:4020..7066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6784.17712.1 ID=mRNA_Ecto-sp13_S_contig6784.17712.1|Name=mRNA_Ecto-sp13_S_contig6784.17712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3047bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6784:4020..7066+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGCTAGTACATGCTTGTTTGGCTACTCCCCTACGCTCGCTTCTTCGCA
GCCTCGCAGCTCACCGCACACCACAATCGCACCTGCCAATCAAGATGGCG
TCCTCCAATGCAGCTGTAACTAACCAACCCCCCGCTAACGGTGGAGCAAG
CGGGTTGGTAGCGCCCGGGGCGGTGGAGGAACCAAGAGCTGGCGTGTCGA
CCACTATGGTCGGGTGGGGGCCAGGGGAGTTGGGCAGGGGCTGCTGTTGG
ACGATTGCCACGTGCCCGTACCGAGCCACTCAAGCAACGCGCCTCTCCTC
GATCACCGAGCAACAAAAAGACTTTGCGCACTTTTGCAACGTGAGCTACA
ACGACCCAGGCGACCGTCCAACCGAGCTCCGCGGTTACGAACTCCTTCAG
GACGATATGCCTCTACGCGACGGGGTCGACGAGTCGGGCGCCACTACTGA
ACCGCTGAACGGCCAACGCTGGATGGTGTACCGCCACCCCAACAGGGTGA
ACCACGTTCTCGTCTTCAGGGGCACTGTCGACAAACTAGACATGGAGTAC
GACGCACACCTTCTCACGAAAGGACTCGCCGACCACAAGCTCGTGATGGA
CTCGGCAGCGTTTTCGCTGAGGGCGATGATCTTCTTGGAGAAGCAAGCCA
AGGATGAAGGCGATGCCCGTGCTGGTGGAGCAGGAAGTCTCGATACTACC
TGTCTCAAGTTCTGGGTGGCAGGGCATTCGCTGGGAGGTTCCACTGTGAG
TGTTGTTTGTTGTCAATTGGGGGGAATTCCCGGACAATTGGGGGTACTTG
ATAAACAAAATAGAGTGTGCGTGGTATTCCTCCCAAGGTCTCCGACTAAC
TGGGGCATGTGGTTGAGTTGGTGTATTCCAAGGTGCTGCATGGCCAGGAG
TGGTCCTGAAAACCCGCGGAAACTGGTTTACACGCTGAGCAGGGTCTCAA
AGCGTGCCGAACAGGCGTCAGGATCGATTTTTTGGGGGTGTGTGGATCGG
TCGCAAGCAGTCCCAGATCGCGTGCTCCAGCTATCCCCCCACATGACCGT
AAAAGGCCGGGGTGTACGCCCATTTGTACCCTCCCCTATTTTTAACGCGA
GCACGGCTCAGCACTCCCACCCTCGTCAACAATGAAGTCGAAGTAGCTAC
TGTACGTATTTACTAAATAACGAGTTATCGCTTTCAATTTCGTTGAAAAG
TTTGAAAGTTTTAATTGTACCTGGTTACAAATGCGAGAAGAAGGTTCACT
TTGTCGGGACTCGAACCCACCATCTGGCCTTTCGTGGCTGCGAGGGTACC
TACTACAACCACCGGGGCGACCGGCCAATGTTCTGCACAGAGTATGCAAT
ATATCCCTCGGCGTCTCTGGCAAAAGATGAACAACCGGTTGATTTGTTGT
TTGGGAACCACACAGTTGTGAGAGCAGTTCGACAGCCGCACTTGCCACAG
CGTTCGACAATAGAAGAGGCTACGGAGATGCACCTAAGAGGAATAGCCAT
GTGTATCTGGAATGATGTGTACAACCTGCTGTATTCAACGACTTTTATGG
TACACGAGTCTGCGCCCTTTTTCTCCCGTGCGATGGCCGCGCGTTCTTGA
ATCGCGAGCTACCACACAGCTGGGTATCGAGGGTTTGAAATACATTCTCA
AATTGTATCGTGTGGCACAGGCGATGGGGGTGATGCTACTGCTGAACGAT
CCCATTGATATGGTTGCGACTCTGGAAGACAGCGCGAAGTCGAACAAAAC
CAGGCGACAGTTCTTGGAGACGTACAAGGAGAAGATCGCGGACGTGTACA
CCGCCGCTGCCGCCGAGAGCGGAACAAGCCGCCCCTACGATCTTGTCGGC
GGGGACATCTTCAACCCCGGCAGCGCCCCCCGATGCCTTCTGTTCTCCAA
CCCCTGGGTGTGTCTGTTCGGATGCCTGTCTACACCAGCGTGGATCATCA
GCCGCTGTGGCATGTTCTGGTACCGGTTATGCACGTACCGCCACCATGGG
CCCGGCGCAGACCAGCTGGTGAGACCCATTCGTTTGATACCGTCGACTAG
GAGGCCTTACCGTCCGCTTCAGGAGTAGTCGAAGGTCACGTATCACTAGC
ACAGCCAACCGATGGGAATGCCCTTCCTGTCCCCCCTCTGCAATCCCAAG
GTGAACAACCACCACATTCTCGGGGACACCATCTCGATGACGTTTCGCAT
GGGCAAGGAGAAGAGCTATTGGCCCAACCATTGGAAGGTGCATGCTATTG
CGCAATTTCTCTGAAGAGTTGATTCACCGGGAAAGCAGCTCATCGTAAAT
TGGAGGTCGTCTGAACTACTTCGAGATAGAGCGACGATTTGTTCTTGTCG
GCGTACATGGCGGGGGGGACGTCCATCCGGTTCGGTAACCACACAAGCTG
TGTGTAGTAGAGTAGAATCCTCTTGGAGTTGGTAGGGAAACTGAGGTGTG
CGCGACTTACCCCGCGCTTCTTCCGGCCTCCTACTCTGTGTCATTCCAAT
ATTGCAATTATTTTCCTCGCGTTTTTTTTGCTGGCCCCTACCTGCGCGTG
TTTCTCCGTACAGTAGAGACGTGACTCCTGCAACGGCGGGCACCTATGGA
ATTCGAAACTAGAGCAGATAGCACTATAAGTCGTGTCGCTCCTTTTGAGC
CGATTTTGGTGGTGGTACCTGGCTTAGCGGGGCCGATCCCCGTTTCTCGC
ATGGTGGTGTTTCTTCTCTCTGTTCTAATGATGTATAGTTTTCCAATTTG
CGGTACGGAGGCCGCGAGCGAAATTCAGACCTCCCCCCACCCCTTGTCGC
TGCGATTGATGGGCTTGGACAAAGAACTTCTGAACTTGATGCAAGCGGCA
CTGCGTTACTCAAGGGGTTGACTGTCCTGACGCTGTACGTGGATGAGTCT
CGTACCGTGGTTGGTAGGCACACCTCTGTTTGAAGGCCCGGGTGTTGTAG
TGCAGCTAACTTGATGGATTTGATTACTCTGTTCAATCTGTATGTAGGAT
TCAGCGCCAATCAATCCGTCTGTCTGGTGTTTCATACCGTTGGAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6784:4020..7066+

>mRNA_Ecto-sp13_S_contig6784.17712.1 ID=mRNA_Ecto-sp13_S_contig6784.17712.1|Name=mRNA_Ecto-sp13_S_contig6784.17712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6784:4020..7066+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTAGTACATGCTTGTTTGGCTACTCCCCTACGCTCGCTTCTTCGCAG
CCTCGCAGCTCACCGCACACCACAATCGCACCTGCCAATCAAGATGGCGT
CCTCCAATGCAGCTGTAACTAACCAACCCCCCGCTAACGGTGGAGCAAGC
GGGTTGGTAGCGCCCGGGGCGGTGGAGGAACCAAGAGCTGGCGTGTCGAC
CACTATGGTCGGGTGGGGGCCAGGGGAGTTGGGCAGGGGCTGCTGTTGGA
CGATTGCCACGTGCCCGTACCGAGCCACTCAAGCAACGCGCCTCTCCTCG
ATCACCGAGCAACAAAAAGACTTTGCGCACTTTTGCAACGTGAGCTACAA
CGACCCAGGCGACCGTCCAACCGAGCTCCGCGGTTACGAACTCCTTCAGG
ACGATATGCCTCTACGCGACGGGGTCGACGAGTCGGGCGCCACTACTGAA
CCGCTGAACGGCCAACGCTGGATGGTGTACCGCCACCCCAACAGGGTGAA
CCACGTTCTCGTCTTCAGGGGCACTGTCGACAAACTAGACATGGAGTACG
ACGCACACCTTCTCACGAAAGGACTCGCCGACCACAAGCTCGTGATGGAC
TCGGCAGCGTTTTCGCTGAGGGCGATGATCTTCTTGGAGAAGCAAGCCAA
GGATGAAGGCGATGCCCGTGCTGGTGGAGCAGGAAGTCTCGATACTACCT
GTCTCAAGTTCTGGGTGGCAGGGCATTCGCTGGGAGGTTCCACTGCGATG
GGGGTGATGCTACTGCTGAACGATCCCATTGATATGGTTGCGACTCTGGA
AGACAGCGCGAAGTCGAACAAAACCAGGCGACAGTTCTTGGAGACGTACA
AGGAGAAGATCGCGGACGTGTACACCGCCGCTGCCGCCGAGAGCGGAACA
AGCCGCCCCTACGATCTTGTCGGCGGGGACATCTTCAACCCCGGCAGCGC
CCCCCGATGCCTTCTGTTCTCCAACCCCTGGGTGTGTCTGTTCGGATGCC
TGTCTACACCAGCGTGGATCATCAGCCGCTGTGGCATGTTCTGGTACCGG
TTATGCACGTACCGCCACCATGGGCCCGGCGCAGACCAGCTGGTGAACAA
CCACCACATTCTCGGGGACACCATCTCGATGACGTTTCGCATGGGCAAGG
AGAAGAGCTATTGGCCCAACCATTGGAAGGTGCATGCTATTGCGCAATTT
CTCTGA
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