mRNA_Ecto-sp13_S_contig6783.17710.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6783.17710.1
Unique NamemRNA_Ecto-sp13_S_contig6783.17710.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6783.17710.1 vs. uniprot
Match: D7FIT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIT2_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 1.500e-81
Identity = 130/136 (95.59%), Postives = 133/136 (97.79%), Query Frame = 1 
Query:    1 MMFARVVAFACLALGADAFFMGTPLRTSAGVGSSRSATTMKVPTDHPEIEVAEAAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDVTNEKVCEEYQEQMKELEEILAAGPAAMNISVEQLAKQ 408
            MMFARVVA ACLALGADAFFMGTPLRTSAGVGSSR+ATTMKVPTDHPEIEV +AAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDVTNE VCEEYQ+QMKELEEILAAGPAAMNISVEQLAKQ
Sbjct:    1 MMFARVVALACLALGADAFFMGTPLRTSAGVGSSRAATTMKVPTDHPEIEVPKAAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDVTNENVCEEYQDQMKELEEILAAGPAAMNISVEQLAKQ 136
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BLAST of mRNA_Ecto-sp13_S_contig6783.17710.1 vs. uniprot
Match: A0A1Z5JBS1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBS1_FISSO)

HSP 1 Score: 70.9 bits (172), Expect = 3.610e-12
Identity = 42/104 (40.38%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:   55 FFMGTPLRTSAGVGSSRS-ATTMKVPTDHPEIEVAEAAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDVTNE--KVCEEYQEQMKELEEIL 357
            F + T   TSA V    +  T  ++   HP+   A  AA+KA+K +G TSPEAR+AW+  E++AA+DN+ A++ TLDE+CD  +E  ++C EY  + ++L E +
Sbjct:    8 FLLTTSTLTSAFVAHRAAFVTKTQLFAAHPDASAAIEAAVKASKTYGPTSPEARVAWEVVEDIAASDNSAASKGTLDEECDWMDENNRLCMEYDTKKEKLAEAI 111
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BLAST of mRNA_Ecto-sp13_S_contig6783.17710.1 vs. uniprot
Match: A0A6V2QHI9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QHI9_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 1.090e-10
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:  142 EIEVAEAAALKATKEFGATSPEARLAWDTYEEV-AAADNTIATRATLDEDCDVTNE-KVCEEYQEQMKELEEILAAGPAAMNISVEQLAKQV 411
            +I  AEA AL+ATK+FGATSPEARLAW+  EE+ AAA    A +  LD +CDV++  +VC+E+   M+ L E+ A G A    S+    K++
Sbjct:   41 DIFAAEAKALEATKKFGATSPEARLAWEAVEEMNAAARPANAMKKNLDVECDVSDGGEVCKEFNMHMERLAELTAEGSATAAASLANKNKEL 132
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BLAST of mRNA_Ecto-sp13_S_contig6783.17710.1 vs. uniprot
Match: A0A448YV90_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV90_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.230e-10
Identity = 41/106 (38.68%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:   97 SSRSATTMKVPTDHPEIEVAEAAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDV-TNEKVCEEYQEQMKELEEILAAGPAAMNISVEQLAKQV 411
            S R+ T +K      +  VAEA AL  + ++GATS EARLAW+  EE+ A+DN++A+   L+++CDV    + C EY   ++EL+E+L A    ++   E ++K V
Sbjct:   25 SPRTTTQLKAVRSSSDALVAEALAL--SNKYGATSKEARLAWEAVEEINASDNSVASMGNLNDECDVEVVSQDCLEYNAALEELQELLQANQPKISALSEDISKTV 128
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BLAST of mRNA_Ecto-sp13_S_contig6783.17710.1 vs. uniprot
Match: B7FTL9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTL9_PHATC)

HSP 1 Score: 66.2 bits (160), Expect = 4.160e-10
Identity = 38/87 (43.68%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:  163 AALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDVTNEKV---CEEYQEQMKELEEILAAGPAAMNISVEQLAKQVR 414
            AAL+A+K++GATSPEAR+AWD  EE+ A D++ AT+ +L ++CD+  +KV   C EY  +++EL ++LA     +N +V+ LA  ++
Sbjct:  147 AALQASKQYGATSPEARVAWDAVEEMRANDDSPATQGSLADECDIDEDKVSAACLEYGSKIEELNKLLADQVPHLN-NVKTLADDLQ 232
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BLAST of mRNA_Ecto-sp13_S_contig6783.17710.1 vs. uniprot
Match: A0A7S4I4P3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I4P3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.920e-8
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:  133 DHPEIEVAEAAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDVTNEKVCEEYQEQMKELE 348
            D P +  A A A +AT+EFG +SP+A+LAW++ EE+A++D + AT+ TLDE+C V   + CE  +E  + L+
Sbjct:  155 DSPAMRKALAEAKEATEEFGISSPQAKLAWESLEEIASSDLSEATKGTLDEECLVETIEACEAIEELQQVLD 226
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BLAST of mRNA_Ecto-sp13_S_contig6783.17710.1 vs. uniprot
Match: A0A7S2WUU4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUU4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.520e-7
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:   88 GVGSSRSATTMKVPTDHPEIEVAEAAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDVTNEKVCEEYQEQMKELE 348
            GV  ++ + T   P D P +  A A+A  AT+EFGA S EA+LAW+T EEVAA+ +  A RA LDE+C +   + CE  ++    LE
Sbjct:  114 GVKLAQPSVTASAP-DEPAMHRALASARAATEEFGANSVEAKLAWETVEEVAASTSADAIRAPLDEECLIELIEGCEALEKFKAALE 199
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BLAST of mRNA_Ecto-sp13_S_contig6783.17710.1 vs. uniprot
Match: A0A6U4HQZ8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HQZ8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.760e-7
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:  160 AAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRAT----LDEDCDVTNEKVCEEYQEQMKELEEILAAGPA 372
            A AL A+K+FGATS EAR AWD  EE+ AA+   A+       L E C +   ++CE+YQ+Q++EL  IL +  A
Sbjct:   56 AEALDASKKFGATSSEARTAWDIVEEMRAAEADQASNPAIVPNLAELCSLEESELCEQYQQQIEELNAILRSAQA 130
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BLAST of mRNA_Ecto-sp13_S_contig6783.17710.1 vs. uniprot
Match: A0A7S1V082_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V082_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.500e-6
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:  139 PEIEVAEAAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDV-TNEKVCEEYQEQMKELEEILAAG 366
            PE+  A   A  AT +FGATSPEA LAW+ YEE+A++    +    LDE+CD+ + + +CE   E  + L  ++A  
Sbjct:  155 PELTEALEDARTATSKFGATSPEAALAWEAYEEIASSGLQNSMGVRLDEECDIESGQDICEAMDELQRVLPVMMAVA 231
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BLAST of mRNA_Ecto-sp13_S_contig6783.17710.1 vs. uniprot
Match: A0A7S2V3N2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3N2_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.420e-5
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  145 IEVAEAAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDVTNEKVCEEYQEQMKELEEIL 357
            +E A  AAL+AT  FG  S +A+L W+T+E++A+A    AT   LDE C   +   C+EY+    EL E++
Sbjct:   42 LEAAREAALRATATFGVHSVQAKLEWETFEDIASAGTFAATLPALDEQC--FSHLQCQEYEAASLELSELI 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6783.17710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FIT2_ECTSI1.500e-8195.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Z5JBS1_FISSO3.610e-1240.38Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A6V2QHI9_HETAK1.090e-1046.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A448YV90_9STRA2.230e-1038.68Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B7FTL9_PHATC4.160e-1043.68Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S4I4P3_9STRA1.920e-844.44Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2WUU4_9STRA3.520e-743.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U4HQZ8_9STRA7.760e-745.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1V082_9STRA6.500e-640.26Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2V3N2_9STRA2.420e-540.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6783contigEcto-sp13_S_contig6783:940..3888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score68.2
Seed ortholog evalue3.5e-09
Seed eggNOG ortholog2850.Phatr44297
Model size417
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.CP12 domain
EggNOG OGs2EAQA@1,2SGXD@2759,2XDB6@2836
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_003010.1
Cds size417
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.2934623-CDS-Ecto-sp13_S_contig6783:939..10621681463932.2934623-CDS-Ecto-sp13_S_contig6783:939..1062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6783 940..1062 -
1681463932.3044488-CDS-Ecto-sp13_S_contig6783:1900..20441681463932.3044488-CDS-Ecto-sp13_S_contig6783:1900..2044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6783 1901..2044 -
1681463932.3136847-CDS-Ecto-sp13_S_contig6783:3738..38881681463932.3136847-CDS-Ecto-sp13_S_contig6783:3738..3888Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6783 3739..3888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6783.17710.1prot_Ecto-sp13_S_contig6783.17710.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6783 940..3888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6783.17710.1

>prot_Ecto-sp13_S_contig6783.17710.1 ID=prot_Ecto-sp13_S_contig6783.17710.1|Name=mRNA_Ecto-sp13_S_contig6783.17710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
MMFARVVAFACLALGADAFFMGTPLRTSAGVGSSRSATTMKVPTDHPEIE
VAEAAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDVT
NEKVCEEYQEQMKELEEILAAGPAAMNISVEQLAKQVR*
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mRNA from alignment at Ecto-sp13_S_contig6783:940..3888-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6783.17710.1 ID=mRNA_Ecto-sp13_S_contig6783.17710.1|Name=mRNA_Ecto-sp13_S_contig6783.17710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2949bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6783:940..3888- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTTCGCAAGGGTTGTCGCTTTCGCTTGCCTGGCGCTTGGCGCGGA
CGCTTTCTTCATGGGCACGCCGCTCCGGACATCCGCAGGCGTAGGCTCTA
GCCGATCGGCCACGACGATGAAGGTCCCGACAGACCACCCCGAGATCGAG
GTAAAGCGAGGAGAGAGACACGGGTTCAGTCGCGGGCACGGTGCAGCATG
CGACCAGAGGTCAAAAGCTCGCCTGTTCGTGATGATTCTCGGGGCGGTGT
ATTGACTGTGCGGAGGAAGACAAGTTTGTGTCGTCGTCTTCAAGCAGGGA
TAGTGGTGGTGTGACACGTCTTGGGTGGGCCCGTTCTAGGTTTACTGTTT
TTTTAGCACGCATGCAGCAGGAGCCGCACCTGTGGCGGCCACATCATCAT
GTATCATCATCATGTGTGTTTGTCCTACGCTTCGGCGGGGATATCCGGGC
CAGCCTCGATGTGTTGCGTCTCCTCTGGCACCGCTGCTGCGGTGTGCTGA
GCATTCAGAGTGATAGCCTTTCGTGTCTCGGGTGCCGCGGTGCATGCTGG
AATAGTGCTCCTGCTGTGGCCTGGGGGATGTCGCGCGCTGACTATCATGA
GCAGCGTGGCATGTTGTTGTTGTCGTTGTTGTCGTTGTTGTCTTCACATC
ATGGATATATTTTAGCATGGCTGCTGCTTGATTCATAATCGTTTTCCTGA
CGACACCAGCAAGGGTCAGCGAATGCCAAACAACCTTAGTGTTCATGGGC
CACGAGTGCTGGTGCTCCCTTGTATGTTAAGCCCTCTCTCCCTGGGTGGT
CTACAGCAGCAGCACCTCCCGATGAGATGGGAACCAAATTGTACCTTTTT
TTGGTACCGGTCAAAAGGGTGTTGCCGCTGTAGACCTTTTGAAGTCTGCA
CGTGAGATGTGCATCCACCTGGTTCTTTGTACGAAGTAGACCCAACAAGG
AGACAATCGCCGTGTTTGAAGTCCCCTGGACTGTCAGTTTGAAGGCGTTG
AACTCTCTCCTCGCCACTCGCCGCCGGCGTTGCGGAGGACCATTTTGCTG
CCTCGTGCGGCTCGAGCTGCTTGCGGACTCGATCGGGAGGCTTCAAGCAC
GCCCTCCTTGTGGAACTTTCTTGGTAGTCATGCTGCAGACAGGATGTACA
GCAATACACAGCAGTACGTAACGGTCGACTCAAGTTGCCCGTCGTCTGCG
TCCGAATGATTCTGTCATCAGCGCGCGTTTGAAAACACCATAAAAATACT
TGGACAACAAAACGAAACGAAGTTACGTTCAACAAAACCCTCTTCGTGGC
GAACGGCGTTTCCTTTCGTCGCTGTCCGCGAGGTTCTGGTGGGGGCGGCA
GGATAGTCTCTAAAATAGTGATTTTTGGGTTGTGTGTACGTCCCAGGCTT
GTCCGCTGTGCCCCCCGCCTATGTTGGCAAGCACCCGGAGCCATTTAGAA
GGCAGACGCCGAGTTGAAGTCACCCCACTGCCGCTCGTTTGTGTTGCCCG
TGTTGCCCGTGTTGCCCGTGTTGCCCCTCGATAAACGACGTCCACAGCAA
GAACAGATTTAACCCTCCCAATCTGGGCGTACCCGACCTGTAGCTTCACA
CCGATCACCCACTGCTGCGGTTGGGCACGGGCTACCCCCTCCCCACCCCC
CATGCACCGACATTTGTCTCATTAGTGCTCATTCTCGAGAACAATTTTTG
CCCCCTTCGCTTGATGACTCTGCTGTTCATCCTGAGAAGGTGTCAAAAGC
GAGAGTTTCAACTTTTTGTAGTAAATAATGCTGCTGTAGATCATGAAACC
CCGCCCCCCCCCCCCCCCGTCCCCCCGCCACTTTTTTTTCCCAGGTCGCA
GAGGCAGCTGCCCTGAAGGCAACGAAGGAGTTCGGCGCCACCTCCCCCGA
GGCACGCCTGGCGTGGGACACGTACGAGGAGGTGGCGGCCGCCGACAACA
CGATCGCCACACGGGCCACCCTTGACGAGGACTGCGATGTAAGTGCTGCT
GGGACCCCACCTTTGCGAGGAGTGAAGTGTTTGAGGAAGTAGAACAGGGT
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGTTTCCTGGTCGCGGTGGTTGTACCAGTGGTTG
ATGTAAAGAGTTGGCGCTCCCCCAAGGAGAGAAATGTTTCCTATCCGCTG
GCCGACACCTCCAGCTGCATCGAGGAAGCCCTGAATGCGCCTCCCTGCTC
TCGCCTGGTCGTTTGTTCGCAGCTTAAAATAGATGGGAACGTCCTCGTGG
TCAACGACCAATCCCATAACACAGAAAATCGCCAGCTGCGGACGTCTTCC
TCCTTGGCAAACCTATAGCGTCACACACACGCGCACAAAAGTTGAAGCCT
ACTTCGGTGGACTTGTCAGTTTTGCCAACTACCATGGCCCAGCTTGTTGC
ATTGCGTGGCCGATGCTAAACGAGAAAGGTCATATACCCGCGTACACACA
TTCTTTGGATATTGGGCTCCCTTCACGGGTCCTTGATTGTGTCCTGCCAT
CAAACCGACGTCTGTCGACTGGTGAGCCGGTTAGCGTGTTCGATGCTAAG
TAGAAGACACACATAAACATGTGCAGGTGACAAACGAGAAGGTGTGCGAG
GAGTACCAGGAGCAGATGAAGGAGTTGGAGGAGATCTTGGCTGCGGGTCC
CGCGGCGATGAACATCAGCGTCGAGCAGCTCGCCAAGCAGGTGCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6783:940..3888-

>mRNA_Ecto-sp13_S_contig6783.17710.1 ID=mRNA_Ecto-sp13_S_contig6783.17710.1|Name=mRNA_Ecto-sp13_S_contig6783.17710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6783:940..3888- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTTCGCAAGGGTTGTCGCTTTCGCTTGCCTGGCGCTTGGCGCGGA
CGCTTTCTTCATGGGCACGCCGCTCCGGACATCCGCAGGCGTAGGCTCTA
GCCGATCGGCCACGACGATGAAGGTCCCGACAGACCACCCCGAGATCGAG
GTCGCAGAGGCAGCTGCCCTGAAGGCAACGAAGGAGTTCGGCGCCACCTC
CCCCGAGGCACGCCTGGCGTGGGACACGTACGAGGAGGTGGCGGCCGCCG
ACAACACGATCGCCACACGGGCCACCCTTGACGAGGACTGCGATGTGACA
AACGAGAAGGTGTGCGAGGAGTACCAGGAGCAGATGAAGGAGTTGGAGGA
GATCTTGGCTGCGGGTCCCGCGGCGATGAACATCAGCGTCGAGCAGCTCG
CCAAGCAGGTGCGGTGA
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