prot_Ecto-sp13_S_contig67812.17709.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig67812.17709.1
Unique Nameprot_Ecto-sp13_S_contig67812.17709.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length63
Homology
BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A6H5JTL7_9PHAE (Rhomboid-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL7_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 9.170e-32
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0
Query:    3 QVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL 63
            +VACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL
Sbjct:  511 RVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL 571          
BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: D8LIB7_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB7_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 5.430e-30
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0
Query:    3 QVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL 63
            +VA IYLV+GVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL
Sbjct:  513 RVASIYLVSGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL 573          
BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A7S3UQB1_HETAK (Rhomboid-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQB1_HETAK)

HSP 1 Score: 73.9 bits (180), Expect = 6.710e-14
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 0
Query:    2 RQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSV 52
            +++  IYL++G+FGT+ SAIFVP Q+MVGASGAIFG+ GA WADL QNWSV
Sbjct:  264 QRLTVIYLLSGIFGTLCSAIFVPYQLMVGASGAIFGMVGARWADLIQNWSV 314          
BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A835YQV6_9STRA (Rhomboid-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.040e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    3 QVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQ 54
            +V  I++V+GVF T VSAIF+P QVMVGASGAI G+ G +WADL QNWS+ Q
Sbjct:   83 KVLVIFIVSGVFSTAVSAIFLPYQVMVGASGAILGLLGGVWADLLQNWSLKQ 134          
BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A1V9Z7A4_9STRA (Rhomboid-like protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z7A4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.290e-11
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0
Query:    2 RQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL 63
            R++A IY   G+ G IVS  FVPT V VGASGAIFG+FGA +A+   NW +  +RC   T L
Sbjct:  151 RRIALIYFATGIIGAIVSGFFVPTVVGVGASGAIFGLFGATFAEFMLNWKLYTNRCCHMTNL 212          
BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A2R5H0C6_9STRA (Rhomboid-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H0C6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.570e-11
Identity = 28/52 (53.85%), Postives = 43/52 (82.69%), Query Frame = 0
Query:    1 SRQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSV 52
            S +++ I++ +G+FG ++SAIF+P Q+ VGASGA+FG+FGA W+DL  NWS+
Sbjct:  224 SLKISIIFIGSGIFGVLLSAIFLPQQLSVGASGALFGLFGAAWSDLLHNWSL 275          
BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A7S3PMX5_9STRA (Rhomboid-like protein n=4 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMX5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.210e-10
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0
Query:    3 QVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRM 59
            ++A + + +G+FG ++SA+F P  V VGASGAIFG+FGA WADL QNW + + R ++
Sbjct:  153 RIATVAISSGIFGVVMSALFAPHLVGVGASGAIFGLFGAAWADLAQNWELYRGRNKL 209          
BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: W4FXV8_9STRA (Rhomboid-like protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FXV8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.970e-10
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    2 RQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDR-CRMFTVL 63
            R+V CIY  +G+ G + SA+FVP  + VGASGAIFG+FGA +A+   NW +  +R C M  ++
Sbjct:  158 RRVVCIYFASGLIGAMCSAVFVPDVIGVGASGAIFGLFGATFAEFVLNWDLYANRLCHMTNLI 220          
BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A6G0WTH8_9STRA (Rhomboid-like protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTH8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.200e-10
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 0
Query:    2 RQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRC 57
            R+V  +Y V G+ G + SA+FVP  V VGASGAIFG+FGA +A+   NW +  +RC
Sbjct:  171 RRVVILYFVTGLIGAMASAVFVPNVVGVGASGAIFGLFGATFAEFLLNWELYTNRC 226          
BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: W4FVH6_9STRA (Rhomboid-like protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FVH6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.510e-10
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    2 RQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDR-CRMFTVL 63
            R+V CIY  +G+ G + SA+FVP  + VGASGAIFG+FGA +A+   NW +  +R C M  ++
Sbjct:  158 RRVVCIYFASGLIGAMCSAVFVPDVIGVGASGAIFGLFGATFAEFVLNWDLYANRLCHMTNLI 220          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTL7_9PHAE9.170e-3298.36Rhomboid-like protein n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LIB7_ECTSI5.430e-3095.08Rhomboid-like protein n=1 Tax=Ectocarpus siliculos... [more]
A0A7S3UQB1_HETAK6.710e-1468.63Rhomboid-like protein n=1 Tax=Heterosigma akashiwo... [more]
A0A835YQV6_9STRA5.040e-1365.38Rhomboid-like protein n=1 Tax=Tribonema minus TaxI... [more]
A0A1V9Z7A4_9STRA2.290e-1153.23Rhomboid-like protein n=1 Tax=Thraustotheca clavat... [more]
A0A2R5H0C6_9STRA4.570e-1153.85Rhomboid-like protein n=1 Tax=Hondaea fermentalgia... [more]
A0A7S3PMX5_9STRA1.210e-1050.88Rhomboid-like protein n=4 Tax=Aplanochytrium stocc... [more]
W4FXV8_9STRA4.970e-1047.62Rhomboid-like protein n=2 Tax=Aphanomyces astaci T... [more]
A0A6G0WTH8_9STRA6.200e-1051.79Rhomboid-like protein n=1 Tax=Aphanomyces euteiche... [more]
W4FVH6_9STRA7.510e-1047.62Rhomboid-like protein n=1 Tax=Aphanomyces astaci T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035952Rhomboid-like superfamilyGENE3D1.20.1540.10coord: 1..63
e-value: 5.1E-11
score: 44.4
IPR022764Peptidase S54, rhomboid domainPFAMPF01694Rhomboidcoord: 3..51
e-value: 1.6E-12
score: 47.6
NoneNo IPR availablePANTHERPTHR45965FAMILY NOT NAMEDcoord: 3..54
NoneNo IPR availablePANTHERPTHR45965:SF3INACTIVE RHOMBOID PROTEIN 1coord: 3..54
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..28
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 48..63
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..47
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 5..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..4
NoneNo IPR availableSUPERFAMILY144091Rhomboid-likecoord: 2..52
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67812contigEcto-sp13_S_contig67812:54..242 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67812.17709.1mRNA_Ecto-sp13_S_contig67812.17709.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig67812 54..242 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig67812.17709.1 ID=prot_Ecto-sp13_S_contig67812.17709.1|Name=mRNA_Ecto-sp13_S_contig67812.17709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
SRQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNW
SVNQDRCRMFTVL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035952Rhomboid-like_sf
IPR022764Peptidase_S54_rhomboid_dom